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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL BASIS OF DNA DAMAGE RECOGNITION AND PROCESSING BY CRYSTAL STRUCTURE OF A UVRB/DNA COMPLEX
Keywords PROTEIN-DNA COMPLEX, UVRB, UVRC, UVRD, UVRA, NER, NUCLEOTIDE REPAIR, DNA REPAIR, DNA BINDING PROTEIN-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2FDC     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Other macromolecule   5'-D(P*CP*GP*GP*CP*TP*CP*CP*AP*TP*CP*TP*CP*TP*AP* P*AP*A)-3'  C 12 243 0
2  Other macromolecule   5'-D(P*CP*GP*GP*CP*TP*CP*CP*AP*TP*CP*TP*CP*TP*AP* P*AP*A)-3'  D 5 100 0
3  Protein   UVRABC SYSTEM PROTEIN B  A 505 4072 0
4  Protein   UVRABC SYSTEM PROTEIN B  B 585 4731 0
5  Ligand   5'-D(P*CP*GP*GP*CP*TP*CP*CP*AP*TP*CP*TP*CP*TP*AP* P*AP*A)-3'  C 1 0 32
total       1108 9146 32
Proteins
Unit 3 VAL1 GLU2 GLY3 ARG4 PHE5 GLN6 LEU7 VAL8 ALA9 PRO10 TYR11 GLU12 PRO13 GLN14 GLY15 ASP16 GLN17 PRO18 GLN19 ALA20 ILE21 ALA22 LYS23 LEU24 VAL25 ASP26 GLY27 LEU28 ARG29 ARG30 GLY31 VAL32 LYS33 HIS34 GLN35 THR36 LEU37 LEU38 GLY39 ALA40 THR41 GLY42 THR43 GLY44 LYS45 THR46 PHE47 THR48 ILE49 SER50 ASN51 VAL52 ILE53 ALA54 GLN55 VAL56 ASN57 LYS58 PRO59 THR60 LEU61 VAL62 ILE63 ALA64 HIS65 ASN66 LYS67 THR68 LEU69 ALA70 GLY71 GLN72 LEU73 TYR74 SER75 GLU76 LEU77 LYS78 GLU79 PHE80 PHE81 PRO82 HIS83 ASN84 ALA85 VAL86 GLU87 TYR88 PHE89 VAL90 SER91 TYR92 TYR93 ASP94 TYR95 TYR96 GLN97 PRO98 GLU99 ALA100 TYR101 VAL102 PRO103 GLN104 THR105 ASP106 THR107 TYR108 ILE109 GLU110 LYS111 ASP112 ALA113 LYS114 ILE115 ASN116 ASP117 GLU118 ILE119 ASP120 LYS121 LEU122 ARG123 HIS124 SER125 ALA126 THR127 SER128 ALA129 LEU130 PHE131 GLU132 ARG133 ARG134 ASP135 VAL136 ILE137 ILE138 VAL139 ALA140 SER141 VAL142 SER143 CYS144 ILE145 TYR146 GLY147 LEU148 GLY149 SER150 PRO151 GLU152 GLU153 TYR154 ARG155 GLU156 LEU157 VAL158 VAL159 ILE243 PHE244 PRO245 ALA246 SER247 HIS248 PHE249 VAL250 THR251 ARG252 GLU253 GLU254 LYS255 MET256 ARG257 LEU258 ALA259 ILE260 GLN261 ASN262 ILE263 GLU264 GLN265 GLU266 LEU267 GLU268 GLU269 ARG270 LEU271 ALA272 GLU273 LEU274 ARG275 ALA276 GLN277 GLY278 LYS279 LEU280 LEU281 GLU282 ALA283 GLN284 ARG285 LEU286 GLU287 GLN288 ARG289 THR290 ARG291 TYR292 ASP293 LEU294 GLU295 MET296 MET297 ARG298 GLU299 MET300 GLY301 PHE302 CYS303 SER304 GLY305 ILE306 GLU307 ASN308 TYR309 SER310 ARG311 HIS312 LEU313 ALA314 LEU315 ARG316 PRO317 PRO318 GLY319 SER320 THR321 PRO322 TYR323 THR324 LEU325 LEU326 ASP327 TYR328 PHE329 PRO330 ASP331 ASP332 PHE333 LEU334 ILE335 ILE336 VAL337 ASP338 GLU339 SER340 HIS341 VAL342 THR343 LEU344 PRO345 GLN346 LEU347 ARG348 GLY349 MET350 TYR351 ASN352 GLY353 ASP354 ARG355 ALA356 ARG357 LYS358 GLN359 VAL360 LEU361 VAL362 ASP363 HIS364 GLY365 PHE366 ARG367 LEU368 PRO369 SER370 ALA371 LEU372 ASP373 ASN374 ARG375 PRO376 LEU377 THR378 PHE379 GLU380 GLU381 PHE382 GLU383 GLN384 LYS385 ILE386 ASN387 GLN388 ILE389 ILE390 TYR391 VAL392 SER393 ALA394 THR395 PRO396 GLY397 PRO398 TYR399 GLU400 LEU401 GLU402 HIS403 SER404 PRO405 GLY406 VAL407 VAL408 GLU409 GLN410 ILE411 ILE412 ARG413 PRO414 THR415 GLY416 LEU417 LEU418 ASP419 PRO420 THR421 ILE422 ASP423 VAL424 ARG425 PRO426 THR427 LYS428 GLY429 GLN430 ILE431 ASP432 ASP433 LEU434 ILE435 GLY436 GLU437 ILE438 ARG439 GLU440 ARG441 VAL442 GLU443 ARG444 ASN445 GLU446 ARG447 THR448 LEU449 VAL450 THR451 THR452 LEU453 THR454 LYS455 LYS456 MET457 ALA458 GLU459 ASP460 LEU461 THR462 ASP463 TYR464 LEU465 LYS466 GLU467 ALA468 GLY469 ILE470 LYS471 VAL472 ALA473 TYR474 LEU475 HIS476 GLU483 ARG484 ILE485 GLU486 ILE487 ILE488 ARG489 ASP490 LEU491 ARG492 LEU493 GLY494 LYS495 TYR496 ASP497 VAL498 LEU499 VAL500 GLY501 ILE502 ASN503 LEU504 LEU505 ARG506 GLU507 GLY508 LEU509 ASP510 ILE511 PRO512 GLU513 VAL514 SER515 LEU516 VAL517 ALA518 ILE519 LEU520 ASP521 ALA522 ASP523 LYS524 GLU525 GLY526 PHE527 LEU528 ARG529 SER530 GLU531 ARG532 SER533 LEU534 ILE535 GLN536 THR537 ILE538 GLY539 ARG540 ALA541 ALA542 ARG543 ASN544 ALA545 ASN546 GLY547 HIS548 VAL549 ILE550 MET551 TYR552 ALA553 ASP554 THR555 ILE556 THR557 LYS558 SER559 MET560 GLU561 ILE562 ALA563 ILE564 GLN565 GLU566 THR567 LYS568 ARG569 ARG570 ARG571 ALA572 ILE573 GLN574 GLU575 GLU576 TYR577 ASN578 ARG579 LYS580 HIS581 GLY582 ILE583 VAL584 PRO585 ARG586 THR587 VAL588 LYS589 LYS590 GLU591 ILE592 ARG593 ASP594
Unit 4 VAL1 GLU2 GLY3 ARG4 PHE5 GLN6 LEU7 VAL8 ALA9 PRO10 TYR11 GLU12 PRO13 GLN14 GLY15 ASP16 GLN17 PRO18 GLN19 ALA20 ILE21 ALA22 LYS23 LEU24 VAL25 ASP26 GLY27 LEU28 ARG29 ARG30 GLY31 VAL32 LYS33 HIS34 GLN35 THR36 LEU37 LEU38 GLY39 ALA40 THR41 GLY42 THR43 GLY44 LYS45 THR46 PHE47 THR48 ILE49 SER50 ASN51 VAL52 ILE53 ALA54 GLN55 VAL56 ASN57 LYS58 PRO59 THR60 LEU61 VAL62 ILE63 ALA64 HIS65 ASN66 LYS67 THR68 LEU69 ALA70 GLY71 GLN72 LEU73 TYR74 SER75 GLU76 LEU77 LYS78 GLU79 PHE80 PHE81 PRO82 HIS83 ASN84 ALA85 VAL86 GLU87 TYR88 PHE89 VAL90 SER91 TYR92 TYR93 ASP94 TYR95 TYR96 GLN97 PRO98 GLU99 ALA100 TYR101 VAL102 PRO103 GLN104 THR105 ASP106 THR107 TYR108 ILE109 GLU110 LYS111 ASP112 ALA113 LYS114 ILE115 ASN116 ASP117 GLU118 ILE119 ASP120 LYS121 LEU122 ARG123 HIS124 SER125 ALA126 THR127 SER128 ALA129 LEU130 PHE131 GLU132 ARG133 ARG134 ASP135 VAL136 ILE137 ILE138 VAL139 ALA140 SER141 VAL142 SER143 CYS144 ILE145 TYR146 GLY147 LEU148 GLY149 SER150 PRO151 GLU152 GLU153 TYR154 ARG155 GLU156 LEU157 VAL158 VAL159 SER160 LEU161 ARG162 VAL163 GLY164 MET165 GLU166 ILE167 GLU168 ARG169 ASN170 ALA171 LEU172 LEU173 ARG174 ARG175 LEU176 VAL177 ASP178 ILE179 GLN180 TYR181 ASP182 ARG183 ASN184 ASP185 ILE186 ASP187 PHE188 ARG189 ARG190 GLY191 THR192 PHE193 ARG194 VAL195 ARG196 GLY197 ASP198 VAL199 VAL200 GLU201 ILE202 PHE203 PRO204 ALA205 SER206 ARG207 ASP208 GLU209 HIS210 CYS211 ILE212 ARG213 VAL214 GLU215 PHE216 PHE217 GLY218 ASP219 GLU220 ILE221 GLU222 ARG223 ILE224 ARG225 GLU226 VAL227 ASP228 ALA229 LEU230 THR231 GLY232 GLU233 VAL234 LEU235 GLY236 GLU237 ARG238 GLU239 HIS240 VAL241 ALA242 ILE243 PHE244 PRO245 ALA246 SER247 HIS248 PHE249 VAL250 THR251 ARG252 GLU253 GLU254 LYS255 MET256 ARG257 LEU258 ALA259 ILE260 GLN261 ASN262 ILE263 GLU264 GLN265 GLU266 LEU267 GLU268 GLU269 ARG270 LEU271 ALA272 GLU273 LEU274 ARG275 ALA276 GLN277 GLY278 LYS279 LEU280 LEU281 GLU282 ALA283 GLN284 ARG285 LEU286 GLU287 GLN288 ARG289 THR290 ARG291 TYR292 ASP293 LEU294 GLU295 MET296 MET297 ARG298 GLU299 MET300 GLY301 PHE302 CYS303 SER304 GLY305 ILE306 GLU307 ASN308 TYR309 SER310 ARG311 HIS312 LEU313 ALA314 LEU315 ARG316 PRO317 PRO318 GLY319 SER320 THR321 PRO322 TYR323 THR324 LEU325 LEU326 ASP327 TYR328 PHE329 PRO330 ASP331 ASP332 PHE333 LEU334 ILE335 ILE336 VAL337 ASP338 GLU339 SER340 HIS341 VAL342 THR343 LEU344 PRO345 GLN346 LEU347 ARG348 GLY349 MET350 TYR351 ASN352 GLY353 ASP354 ARG355 ALA356 ARG357 LYS358 GLN359 VAL360 LEU361 VAL362 ASP363 HIS364 GLY365 PHE366 ARG367 LEU368 PRO369 SER370 ALA371 LEU372 ASP373 ASN374 ARG375 PRO376 LEU377 THR378 PHE379 GLU380 GLU381 PHE382 GLU383 GLN384 LYS385 ILE386 ASN387 GLN388 ILE389 ILE390 TYR391 VAL392 SER393 ALA394 THR395 PRO396 GLY397 PRO398 TYR399 GLU400 LEU401 GLU402 HIS403 SER404 PRO405 GLY406 VAL407 VAL408 GLU409 GLN410 ILE411 ILE412 ARG413 PRO414 THR415 GLY416 LEU417 LEU418 ASP419 PRO420 THR421 ILE422 ASP423 VAL424 ARG425 PRO426 THR427 LYS428 GLY429 GLN430 ILE431 ASP432 ASP433 LEU434 ILE435 GLY436 GLU437 ILE438 ARG439 GLU440 ARG441 VAL442 GLU443 ARG444 ASN445 GLU446 ARG447 THR448 LEU449 VAL450 THR451 THR452 LEU453 THR454 LYS455 LYS456 MET457 ALA458 GLU459 ASP460 LEU461 THR462 ASP463 TYR464 LEU465 LYS466 GLU467 ALA468 GLY469 ILE470 LYS471 VAL472 ALA473 TYR474 LEU475 HIS476 ILE485 GLU486 ILE487 ILE488 ARG489 ASP490 LEU491 ARG492 LEU493 GLY494 LYS495 TYR496 ASP497 VAL498 LEU499 VAL500 GLY501 ILE502 ASN503 LEU504 LEU505 ARG506 GLU507 GLY508 LEU509 ASP510 ILE511 PRO512 GLU513 VAL514 SER515 LEU516 VAL517 ALA518 ILE519 LEU520 ASP521 ALA522 ASP523 LYS524 GLU525 GLY526 PHE527 LEU528 ARG529 SER530 GLU531 ARG532 SER533 LEU534 ILE535 GLN536 THR537 ILE538 GLY539 ARG540 ALA541 ALA542 ARG543 ASN544 ALA545 ASN546 GLY547 HIS548 VAL549 ILE550 MET551 TYR552 ALA553 ASP554 THR555 ILE556 THR557 LYS558 SER559 MET560 GLU561 ILE562 ALA563 ILE564 GLN565 GLU566 THR567 LYS568 ARG569 ARG570 ARG571 ALA572 ILE573 GLN574 GLU575 GLU576 TYR577 ASN578 ARG579 LYS580 HIS581 GLY582 ILE583 VAL584 PRO585 ARG586 THR587 VAL588 LYS589 LYS590 GLU591 ILE592 ARG593
Other macromolecules
Unit 1 DC1 DG2 DG3 DC4 DT5 DT13 DA14 DC15 DC16 DG17 DC18 DA19
Unit 2 DC15 DC16 DG17 DC18 DA19
Ligands
Unit 5 FLQ473
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany