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Sequence, Chains, Asymmetric and Biological Units

Title IGG1 FAB FRAGMENT (58.2) COMPLEX WITH 12-RESIDUE CYCLIC PEPT (INCLUDING RESIDUES 315-324 OF HIV-1 GP120) (MN ISOLATE)
Keywords IMMUNOGLOBULIN, FAB, HIV-1, GP120, V3, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2F58     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROTEIN (IGG1 FAB 58.2 ANTIBODY (LIGHT CHAIN))  L 216 1658 0
2  Protein   PROTEIN (IGG1 FAB 58.2 ANTIBODY (HEAVY CHAIN))  H 228 1747 0
3  Protein   PROTEIN (HIV-1 GP120)  P 11 73 0
4  Ligand   PROTEIN (HIV-1 GP120)  P 1 0 7
5 Water     1 0 1
total       457 3478 8

Proteins
Unit 1 ASP1 ILE2 VAL3 LEU4 THR5 GLN6 SER7 PRO8 ALA9 SER10 LEU11 ALA12 VAL13 SER14 LEU15 GLY16 GLN17 ARG18 ALA19 THR20 ILE21 SER22 CYS23 LYS24 ALA25 SER26 GLN27 GLY27A VAL27B ASP27C PHE27D ASP28 GLY29 ALA30 SER31 PHE32 MET33 ASN34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 GLN42 PRO43 PRO44 LYS45 LEU46 LEU47 ILE48 PHE49 ALA50 ALA51 SER52 THR53 LEU54 GLU55 SER56 GLY57 ILE58 PRO59 ALA60 ARG61 PHE62 SER63 GLY64 ARG65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 ASN74 ILE75 HIS76 PRO77 VAL78 GLU79 GLU80 GLU81 ASP82 ALA83 ALA84 THR85 TYR86 TYR87 CYS88 GLN89 GLN90 SER91 HIS92 GLU93 ASP94 PRO95 LEU96 THR97 PHE98 GLY99 ALA100 GLY101 THR102 LYS103 LEU104 GLU105 LEU106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211 ALA212
Unit 2 ASP1 VAL2 GLN3 LEU4 GLN5 GLN6 SER7 GLY8 PRO9 ASP10 LEU11 VAL12 LYS13 PRO14 SER15 GLN16 SER17 LEU18 SER19 LEU20 THR21 CYS22 THR23 VAL24 THR25 GLY26 TYR27 SER28 ILE29 THR30 SER31 GLY32 TYR33 SER34 TRP35 HIS35A TRP36 ILE37 ARG38 GLN39 PHE40 PRO41 GLY42 ASN43 LYS44 LEU45 GLU46 TRP47 MET48 GLY49 TYR50 ILE51 HIS52 TYR53 SER54 ALA55 GLY56 THR57 ASN58 TYR59 ASN60 PRO61 SER62 LEU63 LYS64 SER65 ARG66 ILE67 SER68 ILE69 THR70 ARG71 ASP72 THR73 SER74 LYS75 ASN76 GLN77 PHE78 PHE79 LEU80 GLN81 LEU82 ASN82A SER82B VAL82C THR83 THR84 GLU85 ASP86 THR87 ALA88 THR89 TYR90 TYR91 CYS92 ALA93 ARG94 GLU95 GLU96 ALA97 MET98 PRO99 TYR100 GLY100A ASN100B GLN100C ALA100D TYR100E TYR100F TYR100G ALA100H MET100I ASP101 CYS102 TRP103 GLY104 GLN105 GLY106 THR107 THR108 VAL109 THR110 VAL111 SER112 SER113 ALA114 LYS115 THR116 THR117 PRO118 PRO119 SER120 VAL121 TYR122 PRO123 LEU124 ALA125 PRO126 GLY127 SER128 ALA129 ALA130 GLN133 THR134 ASN135 SER136 MET137 VAL138 THR139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 GLY146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 VAL154 THR156 TRP157 ASN162 SER163 GLY164 SER165 LEU166 SER167 SER168 GLY169 VAL171 HIS172 THR173 PHE174 PRO175 ALA176 VAL177 LEU178 GLN179 SER180 ASP183 LEU184 TYR185 THR186 LEU187 SER188 SER189 SER190 VAL191 THR192 VAL193 PRO194 SER195 SER196 PRO198 ARG199 PRO200 SER202 GLU203 THR204 VAL205 THR206 CYS208 ASN209 VAL210 ALA211 HIS212 PRO213 ALA214 SER215 SER216 THR217 LYS218 VAL219 ASP220 LYS221 LYS222 ILE223 VAL226 PRO227 ARG228 ASP229 CYS230
Unit 3 GLY10 GLY11 GLY12 HIS315 ILE316 GLY319 PRO320 GLY321 ARG322 ALA323 PHE324

Ligands
Unit 4 ARN1

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany