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Sequence, Chains, Asymmetric and Biological Units

Title DIRECTED EVOLUTION OF HUMAN T CELL RECEPTOR CDR2 RESIDUES BY DISPLAY DRAMATICALLY ENHANCES AFFINITY FOR COGNATE PEPTIDE- WITHOUT INCREASING APPARENT CROSS-REACTIVITY
Keywords T-CELL RECEPTOR, CDR2, PHAGE DISPLAY, WILD TYPE SEQUENCE, HI AFFINITY, NY-ESO-1, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2F54     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HLA CLASS I HISTOCOMPATIBILITY ANTIGEN  A 274 2238 0
2  Protein   BETA-2-MICROGLOBULIN  B 100 828 0
3  Protein   CANCER/TESTIS ANTIGEN 1B  C 9 75 0
4  Protein   T-CELL RECEPTOR ALPHA CHAIN  D 205 1567 0
5  Protein   T-CELL RECEPTOR BETA CHAIN  E 241 1902 0
6  Protein   HLA CLASS I HISTOCOMPATIBILITY ANTIGEN  F 274 2238 0
7  Protein   BETA-2-MICROGLOBULIN  G 100 828 0
8  Protein   CANCER/TESTIS ANTIGEN 1B  H 9 75 0
9  Protein   T-CELL RECEPTOR ALPHA CHAIN  K 206 1576 0
10  Protein   T-CELL RECEPTOR BETA CHAIN  L 241 1902 0
11 Water     30 0 30
total       1689 13229 30
Proteins
Unit 1 GLY1 SER2 HIS3 SER4 MET5 ARG6 TYR7 PHE8 PHE9 THR10 SER11 VAL12 SER13 ARG14 PRO15 GLY16 ARG17 GLY18 GLU19 PRO20 ARG21 PHE22 ILE23 ALA24 VAL25 GLY26 TYR27 VAL28 ASP29 ASP30 THR31 GLN32 PHE33 VAL34 ARG35 PHE36 ASP37 SER38 ASP39 ALA40 ALA41 SER42 GLN43 ARG44 MET45 GLU46 PRO47 ARG48 ALA49 PRO50 TRP51 ILE52 GLU53 GLN54 GLU55 GLY56 PRO57 GLU58 TYR59 TRP60 ASP61 GLY62 GLU63 THR64 ARG65 LYS66 VAL67 LYS68 ALA69 HIS70 SER71 GLN72 THR73 HIS74 ARG75 VAL76 ASP77 LEU78 GLY79 THR80 LEU81 ARG82 GLY83 TYR84 TYR85 ASN86 GLN87 SER88 GLU89 ALA90 GLY91 SER92 HIS93 THR94 VAL95 GLN96 ARG97 MET98 TYR99 GLY100 CYS101 ASP102 VAL103 GLY104 SER105 ASP106 TRP107 ARG108 PHE109 LEU110 ARG111 GLY112 TYR113 HIS114 GLN115 TYR116 ALA117 TYR118 ASP119 GLY120 LYS121 ASP122 TYR123 ILE124 ALA125 LEU126 LYS127 GLU128 ASP129 LEU130 ARG131 SER132 TRP133 THR134 ALA135 ALA136 ASP137 MET138 ALA139 ALA140 GLN141 THR142 THR143 LYS144 HIS145 LYS146 TRP147 GLU148 ALA149 ALA150 HIS151 VAL152 ALA153 GLU154 GLN155 LEU156 ARG157 ALA158 TYR159 LEU160 GLU161 GLY162 THR163 CYS164 VAL165 GLU166 TRP167 LEU168 ARG169 ARG170 TYR171 LEU172 GLU173 ASN174 GLY175 LYS176 GLU177 THR178 LEU179 GLN180 ARG181 THR182 ASP183 ALA184 PRO185 LYS186 THR187 HIS188 MET189 THR190 HIS191 HIS192 ALA193 VAL194 SER195 ASP196 HIS197 GLU198 ALA199 THR200 LEU201 ARG202 CYS203 TRP204 ALA205 LEU206 SER207 PHE208 TYR209 PRO210 ALA211 GLU212 ILE213 THR214 LEU215 THR216 TRP217 GLN218 ARG219 ASP220 GLY221 GLU222 ASP223 GLN224 THR225 GLN226 ASP227 THR228 GLU229 LEU230 VAL231 GLU232 THR233 ARG234 PRO235 ALA236 GLY237 ASP238 GLY239 THR240 PHE241 GLN242 LYS243 TRP244 ALA245 ALA246 VAL247 VAL248 VAL249 PRO250 SER251 GLY252 GLN253 GLU254 GLN255 ARG256 TYR257 THR258 CYS259 HIS260 VAL261 GLN262 HIS263 GLU264 GLY265 LEU266 PRO267 LYS268 PRO269 LEU270 THR271 LEU272 ARG273 TRP274
Unit 2 MET0 ILE1 GLN2 ARG3 THR4 PRO5 LYS6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 ALA15 GLU16 ASN17 GLY18 LYS19 SER20 ASN21 PHE22 LEU23 ASN24 CYS25 TYR26 VAL27 SER28 GLY29 PHE30 HIS31 PRO32 SER33 ASP34 ILE35 GLU36 VAL37 ASP38 LEU39 LEU40 LYS41 ASN42 GLY43 GLU44 ARG45 ILE46 GLU47 LYS48 VAL49 GLU50 HIS51 SER52 ASP53 LEU54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 LEU64 LEU65 TYR66 CYS67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 LYS75 ASP76 GLU77 TYR78 ALA79 CYS80 ARG81 VAL82 ASN83 HIS84 VAL85 THR86 LEU87 SER88 GLN89 PRO90 CYS91 ILE92 VAL93 LYS94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 3 SER1 LEU2 LEU3 MET4 TRP5 ILE6 THR7 GLN8 CYS9
Unit 4 GLN1 GLN2 VAL3 THR4 GLN5 ILE6 PRO7 ALA8 ALA9 LEU10 SER11 VAL12 PRO13 GLU14 GLY15 GLU16 ASN17 LEU18 VAL19 LEU20 ASN21 CYS22 SER23 PHE24 THR25 ASP26 SER27 ALA28 ILE29 TYR30 ASN31 LEU32 GLN33 TRP34 PHE35 ARG36 GLN37 ASP38 PRO39 GLY40 GLY41 LYS42 LEU43 THR44 SER45 LEU46 LEU47 LEU48 ILE49 GLN50 SER51 SER52 GLN53 ARG54 GLU55 GLN56 THR57 SER58 GLY59 ARG60 LEU61 ASN62 ALA63 SER64 LEU65 ASP66 LYS67 SER68 ALA69 GLY70 SER71 SER72 THR73 LEU74 TYR75 ILE76 ALA77 ALA78 SER79 GLN80 PRO81 GLY82 ASP83 SER84 ALA85 THR86 TYR87 LEU88 CYS89 ALA90 VAL91 ARG92 PRO93 THR94 SER95 GLY96 GLY97 SER98 TYR99 ILE100 PRO101 THR102 PHE103 GLY104 ARG105 GLY106 THR107 SER108 LEU109 ILE110 VAL111 HIS112 PRO113 TYR114 ILE115 GLN116 ASN117 PRO118 ASP119 PRO120 ALA121 VAL122 TYR123 GLN124 LEU125 ARG126 ASP127 SER128 LYS129 SER130 SER131 ASP132 LYS133 SER134 VAL135 CYS136 LEU137 PHE138 THR139 ASP140 PHE141 ASP142 SER143 GLN144 THR145 ASN146 VAL147 SER148 GLN149 SER150 LYS151 ASP152 SER153 ASP154 VAL155 TYR156 ILE157 THR158 ASP159 LYS160 CYS161 VAL162 LEU163 ASP164 MET165 ARG166 SER167 MET168 ASP169 PHE170 LYS171 SER172 ASN173 SER174 ALA175 VAL176 ALA177 TRP178 SER179 ASN180 LYS181 SER182 ASP183 PHE184 ALA185 CYS186 ALA187 ASN188 ALA189 PHE190 ASN191 ASN192 SER193 ILE194 ILE195 PRO196 GLU197 ASP198 THR199 PHE200 PHE201 PRO202 SER203 PRO204 GLU205
Unit 5 GLY1 VAL2 THR3 GLN4 THR5 PRO6 LYS7 PHE8 GLN9 VAL10 LEU11 LYS12 THR13 GLY14 GLN15 SER16 MET17 THR18 LEU19 GLN20 CYS21 ALA22 GLN23 ASP24 MET25 ASN26 HIS27 GLU28 TYR29 MET30 SER31 TRP32 TYR33 ARG34 GLN35 ASP36 PRO37 GLY38 MET39 GLY40 LEU41 ARG42 LEU43 ILE44 HIS45 TYR46 SER47 VAL48 GLY49 ALA50 GLY51 ILE52 THR53 ASP54 GLN55 GLY56 GLU57 VAL58 PRO59 ASN60 GLY61 TYR62 ASN63 VAL64 SER65 ARG66 SER67 THR68 THR69 GLU70 ASP71 PHE72 PRO73 LEU74 ARG75 LEU76 LEU77 SER78 ALA79 ALA80 PRO81 SER82 GLN83 THR84 SER85 VAL86 TYR87 PHE88 CYS89 ALA90 SER91 SER92 TYR93 VAL94 GLY95 ASN96 THR97 GLY98 GLU99 LEU100 PHE101 PHE102 GLY103 GLU104 GLY105 SER106 ARG107 LEU108 THR109 VAL110 LEU111 GLU112 ASP113 LEU114 LYS115 ASN116 VAL117 PHE118 PRO119 PRO120 GLU121 VAL122 ALA123 VAL124 PHE125 GLU126 PRO127 SER128 GLU129 ALA130 GLU131 ILE132 SER133 HIS134 THR135 GLN136 LYS137 ALA138 THR139 LEU140 VAL141 CYS142 LEU143 ALA144 THR145 GLY146 PHE147 TYR148 PRO149 ASP150 HIS151 VAL152 GLU153 LEU154 SER155 TRP156 TRP157 VAL158 ASN159 GLY160 LYS161 GLU162 VAL163 HIS164 SER165 GLY166 VAL167 CYS168 THR169 ASP170 PRO171 GLN172 PRO173 LEU174 LYS175 GLU176 GLN177 PRO178 ALA179 LEU180 ASN181 ASP182 SER183 ARG184 TYR185 ALA186 LEU187 SER188 SER189 ARG190 LEU191 ARG192 VAL193 SER194 ALA195 THR196 PHE197 TRP198 GLN199 ASP200 PRO201 ARG202 ASN203 HIS204 PHE205 ARG206 CYS207 GLN208 VAL209 GLN210 PHE211 TYR212 GLY213 LEU214 SER215 GLU216 ASN217 ASP218 GLU219 TRP220 THR221 GLN222 ASP223 ARG224 ALA225 LYS226 PRO227 VAL228 THR229 GLN230 ILE231 VAL232 SER233 ALA234 GLU235 ALA236 TRP237 GLY238 ARG239 ALA240 ASP241
Unit 6 GLY1 SER2 HIS3 SER4 MET5 ARG6 TYR7 PHE8 PHE9 THR10 SER11 VAL12 SER13 ARG14 PRO15 GLY16 ARG17 GLY18 GLU19 PRO20 ARG21 PHE22 ILE23 ALA24 VAL25 GLY26 TYR27 VAL28 ASP29 ASP30 THR31 GLN32 PHE33 VAL34 ARG35 PHE36 ASP37 SER38 ASP39 ALA40 ALA41 SER42 GLN43 ARG44 MET45 GLU46 PRO47 ARG48 ALA49 PRO50 TRP51 ILE52 GLU53 GLN54 GLU55 GLY56 PRO57 GLU58 TYR59 TRP60 ASP61 GLY62 GLU63 THR64 ARG65 LYS66 VAL67 LYS68 ALA69 HIS70 SER71 GLN72 THR73 HIS74 ARG75 VAL76 ASP77 LEU78 GLY79 THR80 LEU81 ARG82 GLY83 TYR84 TYR85 ASN86 GLN87 SER88 GLU89 ALA90 GLY91 SER92 HIS93 THR94 VAL95 GLN96 ARG97 MET98 TYR99 GLY100 CYS101 ASP102 VAL103 GLY104 SER105 ASP106 TRP107 ARG108 PHE109 LEU110 ARG111 GLY112 TYR113 HIS114 GLN115 TYR116 ALA117 TYR118 ASP119 GLY120 LYS121 ASP122 TYR123 ILE124 ALA125 LEU126 LYS127 GLU128 ASP129 LEU130 ARG131 SER132 TRP133 THR134 ALA135 ALA136 ASP137 MET138 ALA139 ALA140 GLN141 THR142 THR143 LYS144 HIS145 LYS146 TRP147 GLU148 ALA149 ALA150 HIS151 VAL152 ALA153 GLU154 GLN155 LEU156 ARG157 ALA158 TYR159 LEU160 GLU161 GLY162 THR163 CYS164 VAL165 GLU166 TRP167 LEU168 ARG169 ARG170 TYR171 LEU172 GLU173 ASN174 GLY175 LYS176 GLU177 THR178 LEU179 GLN180 ARG181 THR182 ASP183 ALA184 PRO185 LYS186 THR187 HIS188 MET189 THR190 HIS191 HIS192 ALA193 VAL194 SER195 ASP196 HIS197 GLU198 ALA199 THR200 LEU201 ARG202 CYS203 TRP204 ALA205 LEU206 SER207 PHE208 TYR209 PRO210 ALA211 GLU212 ILE213 THR214 LEU215 THR216 TRP217 GLN218 ARG219 ASP220 GLY221 GLU222 ASP223 GLN224 THR225 GLN226 ASP227 THR228 GLU229 LEU230 VAL231 GLU232 THR233 ARG234 PRO235 ALA236 GLY237 ASP238 GLY239 THR240 PHE241 GLN242 LYS243 TRP244 ALA245 ALA246 VAL247 VAL248 VAL249 PRO250 SER251 GLY252 GLN253 GLU254 GLN255 ARG256 TYR257 THR258 CYS259 HIS260 VAL261 GLN262 HIS263 GLU264 GLY265 LEU266 PRO267 LYS268 PRO269 LEU270 THR271 LEU272 ARG273 TRP274
Unit 7 MET0 ILE1 GLN2 ARG3 THR4 PRO5 LYS6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 ALA15 GLU16 ASN17 GLY18 LYS19 SER20 ASN21 PHE22 LEU23 ASN24 CYS25 TYR26 VAL27 SER28 GLY29 PHE30 HIS31 PRO32 SER33 ASP34 ILE35 GLU36 VAL37 ASP38 LEU39 LEU40 LYS41 ASN42 GLY43 GLU44 ARG45 ILE46 GLU47 LYS48 VAL49 GLU50 HIS51 SER52 ASP53 LEU54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 LEU64 LEU65 TYR66 CYS67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 LYS75 ASP76 GLU77 TYR78 ALA79 CYS80 ARG81 VAL82 ASN83 HIS84 VAL85 THR86 LEU87 SER88 GLN89 PRO90 CYS91 ILE92 VAL93 LYS94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 8 SER1 LEU2 LEU3 MET4 TRP5 ILE6 THR7 GLN8 CYS9
Unit 9 LYS0 GLN1 GLN2 VAL3 THR4 GLN5 ILE6 PRO7 ALA8 ALA9 LEU10 SER11 VAL12 PRO13 GLU14 GLY15 GLU16 ASN17 LEU18 VAL19 LEU20 ASN21 CYS22 SER23 PHE24 THR25 ASP26 SER27 ALA28 ILE29 TYR30 ASN31 LEU32 GLN33 TRP34 PHE35 ARG36 GLN37 ASP38 PRO39 GLY40 GLY41 LYS42 LEU43 THR44 SER45 LEU46 LEU47 LEU48 ILE49 GLN50 SER51 SER52 GLN53 ARG54 GLU55 GLN56 THR57 SER58 GLY59 ARG60 LEU61 ASN62 ALA63 SER64 LEU65 ASP66 LYS67 SER68 ALA69 GLY70 SER71 SER72 THR73 LEU74 TYR75 ILE76 ALA77 ALA78 SER79 GLN80 PRO81 GLY82 ASP83 SER84 ALA85 THR86 TYR87 LEU88 CYS89 ALA90 VAL91 ARG92 PRO93 THR94 SER95 GLY96 GLY97 SER98 TYR99 ILE100 PRO101 THR102 PHE103 GLY104 ARG105 GLY106 THR107 SER108 LEU109 ILE110 VAL111 HIS112 PRO113 TYR114 ILE115 GLN116 ASN117 PRO118 ASP119 PRO120 ALA121 VAL122 TYR123 GLN124 LEU125 ARG126 ASP127 SER128 LYS129 SER130 SER131 ASP132 LYS133 SER134 VAL135 CYS136 LEU137 PHE138 THR139 ASP140 PHE141 ASP142 SER143 GLN144 THR145 ASN146 VAL147 SER148 GLN149 SER150 LYS151 ASP152 SER153 ASP154 VAL155 TYR156 ILE157 THR158 ASP159 LYS160 CYS161 VAL162 LEU163 ASP164 MET165 ARG166 SER167 MET168 ASP169 PHE170 LYS171 SER172 ASN173 SER174 ALA175 VAL176 ALA177 TRP178 SER179 ASN180 LYS181 SER182 ASP183 PHE184 ALA185 CYS186 ALA187 ASN188 ALA189 PHE190 ASN191 ASN192 SER193 ILE194 ILE195 PRO196 GLU197 ASP198 THR199 PHE200 PHE201 PRO202 SER203 PRO204 GLU205
Unit 10 GLY1 VAL2 THR3 GLN4 THR5 PRO6 LYS7 PHE8 GLN9 VAL10 LEU11 LYS12 THR13 GLY14 GLN15 SER16 MET17 THR18 LEU19 GLN20 CYS21 ALA22 GLN23 ASP24 MET25 ASN26 HIS27 GLU28 TYR29 MET30 SER31 TRP32 TYR33 ARG34 GLN35 ASP36 PRO37 GLY38 MET39 GLY40 LEU41 ARG42 LEU43 ILE44 HIS45 TYR46 SER47 VAL48 GLY49 ALA50 GLY51 ILE52 THR53 ASP54 GLN55 GLY56 GLU57 VAL58 PRO59 ASN60 GLY61 TYR62 ASN63 VAL64 SER65 ARG66 SER67 THR68 THR69 GLU70 ASP71 PHE72 PRO73 LEU74 ARG75 LEU76 LEU77 SER78 ALA79 ALA80 PRO81 SER82 GLN83 THR84 SER85 VAL86 TYR87 PHE88 CYS89 ALA90 SER91 SER92 TYR93 VAL94 GLY95 ASN96 THR97 GLY98 GLU99 LEU100 PHE101 PHE102 GLY103 GLU104 GLY105 SER106 ARG107 LEU108 THR109 VAL110 LEU111 GLU112 ASP113 LEU114 LYS115 ASN116 VAL117 PHE118 PRO119 PRO120 GLU121 VAL122 ALA123 VAL124 PHE125 GLU126 PRO127 SER128 GLU129 ALA130 GLU131 ILE132 SER133 HIS134 THR135 GLN136 LYS137 ALA138 THR139 LEU140 VAL141 CYS142 LEU143 ALA144 THR145 GLY146 PHE147 TYR148 PRO149 ASP150 HIS151 VAL152 GLU153 LEU154 SER155 TRP156 TRP157 VAL158 ASN159 GLY160 LYS161 GLU162 VAL163 HIS164 SER165 GLY166 VAL167 CYS168 THR169 ASP170 PRO171 GLN172 PRO173 LEU174 LYS175 GLU176 GLN177 PRO178 ALA179 LEU180 ASN181 ASP182 SER183 ARG184 TYR185 ALA186 LEU187 SER188 SER189 ARG190 LEU191 ARG192 VAL193 SER194 ALA195 THR196 PHE197 TRP198 GLN199 ASP200 PRO201 ARG202 ASN203 HIS204 PHE205 ARG206 CYS207 GLN208 VAL209 GLN210 PHE211 TYR212 GLY213 LEU214 SER215 GLU216 ASN217 ASP218 GLU219 TRP220 THR221 GLN222 ASP223 ARG224 ALA225 LYS226 PRO227 VAL228 THR229 GLN230 ILE231 VAL232 SER233 ALA234 GLU235 ALA236 TRP237 GLY238 ARG239 ALA240 ASP241
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany