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Sequence, Chains, Asymmetric and Biological Units

Title COMPLEX BETWEEN RIBOSTAMYCIN AND THE 16S-RRNA A-SITE
Keywords RNA-AMINOGLYCOSIDE INTERACTIONS, A SITE, UOU PAIRS, AA BULGES
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2ET5     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 21 449 0
2  RNA    B 21 449 0
3  Ligand   5'- R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP *CP*GP*C)-3'  A 1 0 31
4  Ligand   5'- R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP *CP*GP*C)-3'  B 4 0 98
5 Water     91 0 91
total       138 898 220

Nucleic acids
Unit 1 G2 C3 G4 U5 C6 A7 C8 A9 C10 C11 G12 G13 U14 G15 A16 A17 G18 U19 C20 G21 C22
Unit 2 G25 C26 G27 U28 C29 A30 C31 A32 C33 C34 G35 G36 U37 G38 A39 A40 G41 U42 C43 G44 C45

Ligands
Unit 3 RIO54
Unit 4 RIO51 RIO52 RIO53 SO455

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany