2EKQ - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF TT0495 PROTEIN FROM THERMUS THERMOPHILUS
• Keywords: GLUCONATE DEHYDROGENASE, STRUCTURAL GENOMICS, NPPSFA, NATION PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKE STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, OXIDOREDUC
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2EKQ	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	2-DEOXY-D-GLUCONATE 3-DEHYDROGENASE	A	238	1804	0
2	Protein	2-DEOXY-D-GLUCONATE 3-DEHYDROGENASE	B	238	1804	0
3	Protein	2-DEOXY-D-GLUCONATE 3-DEHYDROGENASE	C	238	1804	0
4	Protein	2-DEOXY-D-GLUCONATE 3-DEHYDROGENASE	D	228	1719	0
5	Ligand	2-DEOXY-D-GLUCONATE 3-DEHYDROGENASE	A	2	0	11
6	Ligand	2-DEOXY-D-GLUCONATE 3-DEHYDROGENASE	B	6	0	31
7	Ligand	2-DEOXY-D-GLUCONATE 3-DEHYDROGENASE	C	3	0	15
8	Water			1011	0	1011
total				1964	7131	1068

Proteins

Unit 1	GLU 2 ARG 3 LYS 4 ALA 5 LEU 6 VAL 7 THR 8 GLY 9 GLY 10 SER 11 ARG 12 GLY 13 ILE 14 GLY 15 ARG 16 ALA 17 ILE 18 ALA 19 GLU 20 ALA 21 LEU 22 VAL 23 ALA 24 ARG 25 GLY 26 TYR 27 ARG 28 VAL 29 ALA 30 ILE 31 ALA 32 SER 33 ARG 34 ASN 35 PRO 36 GLU 37 GLU 38 ALA 39 ALA 40 GLN 41 SER 42 LEU 43 GLY 44 ALA 45 VAL 46 PRO 47 LEU 48 PRO 49 THR 50 ASP 51 LEU 52 GLU 53 LYS 54 ASP 55 ASP 56 PRO 57 LYS 58 GLY 59 LEU 60 VAL 61 LYS 62 ARG 63 ALA 64 LEU 65 GLU 66 ALA 67 LEU 68 GLY 69 GLY 70 LEU 71 HIS 72 VAL 73 LEU 74 VAL 75 HIS 76 ALA 77 ALA 78 ALA 79 VAL 80 ASN 81 VAL 82 ARG 83 LYS 84 PRO 85 ALA 86 LEU 87 GLU 88 LEU 89 SER 90 TYR 91 GLU 92 GLU 93 TRP 94 ARG 95 ARG 96 VAL 97 LEU 98 TYR 99 LEU 100 HIS 101 LEU 102 ASP 103 VAL 104 ALA 105 PHE 106 LEU 107 LEU 108 ALA 109 GLN 110 ALA 111 ALA 112 ALA 113 PRO 114 HIS 115 MET 116 ALA 117 GLU 118 ALA 119 GLY 120 TRP 121 GLY 122 ARG 123 VAL 124 LEU 125 PHE 126 ILE 127 GLY 128 SER 129 VAL 130 THR 131 THR 132 PHE 133 THR 134 ALA 135 GLY 136 GLY 137 PRO 138 VAL 139 PRO 140 ILE 141 PRO 142 ALA 143 TYR 144 THR 145 THR 146 ALA 147 LYS 148 THR 149 ALA 150 LEU 151 LEU 152 GLY 153 LEU 154 THR 155 ARG 156 ALA 157 LEU 158 ALA 159 LYS 160 GLU 161 TRP 162 ALA 163 ARG 164 LEU 165 GLY 166 ILE 167 ARG 168 VAL 169 ASN 170 LEU 171 LEU 172 CYS 173 PRO 174 GLY 175 TYR 176 VAL 177 GLU 178 THR 179 GLU 180 PHE 181 THR 182 LEU 183 PRO 184 LEU 185 ARG 186 GLN 187 ASN 188 PRO 189 GLU 190 LEU 191 TYR 192 GLU 193 PRO 194 ILE 195 THR 196 ALA 197 ARG 198 ILE 199 PRO 200 MET 201 GLY 202 ARG 203 TRP 204 ALA 205 ARG 206 PRO 207 GLU 208 GLU 209 ILE 210 ALA 211 ARG 212 VAL 213 ALA 214 ALA 215 VAL 216 LEU 217 CYS 218 GLY 219 ASP 220 GLU 221 ALA 222 GLU 223 TYR 224 LEU 225 THR 226 GLY 227 GLN 228 ALA 229 VAL 230 ALA 231 VAL 232 ASP 233 GLY 234 GLY 235 PHE 236 LEU 237 ALA 238 TYR 239
Unit 2	GLU 2 ARG 3 LYS 4 ALA 5 LEU 6 VAL 7 THR 8 GLY 9 GLY 10 SER 11 ARG 12 GLY 13 ILE 14 GLY 15 ARG 16 ALA 17 ILE 18 ALA 19 GLU 20 ALA 21 LEU 22 VAL 23 ALA 24 ARG 25 GLY 26 TYR 27 ARG 28 VAL 29 ALA 30 ILE 31 ALA 32 SER 33 ARG 34 ASN 35 PRO 36 GLU 37 GLU 38 ALA 39 ALA 40 GLN 41 SER 42 LEU 43 GLY 44 ALA 45 VAL 46 PRO 47 LEU 48 PRO 49 THR 50 ASP 51 LEU 52 GLU 53 LYS 54 ASP 55 ASP 56 PRO 57 LYS 58 GLY 59 LEU 60 VAL 61 LYS 62 ARG 63 ALA 64 LEU 65 GLU 66 ALA 67 LEU 68 GLY 69 GLY 70 LEU 71 HIS 72 VAL 73 LEU 74 VAL 75 HIS 76 ALA 77 ALA 78 ALA 79 VAL 80 ASN 81 VAL 82 ARG 83 LYS 84 PRO 85 ALA 86 LEU 87 GLU 88 LEU 89 SER 90 TYR 91 GLU 92 GLU 93 TRP 94 ARG 95 ARG 96 VAL 97 LEU 98 TYR 99 LEU 100 HIS 101 LEU 102 ASP 103 VAL 104 ALA 105 PHE 106 LEU 107 LEU 108 ALA 109 GLN 110 ALA 111 ALA 112 ALA 113 PRO 114 HIS 115 MET 116 ALA 117 GLU 118 ALA 119 GLY 120 TRP 121 GLY 122 ARG 123 VAL 124 LEU 125 PHE 126 ILE 127 GLY 128 SER 129 VAL 130 THR 131 THR 132 PHE 133 THR 134 ALA 135 GLY 136 GLY 137 PRO 138 VAL 139 PRO 140 ILE 141 PRO 142 ALA 143 TYR 144 THR 145 THR 146 ALA 147 LYS 148 THR 149 ALA 150 LEU 151 LEU 152 GLY 153 LEU 154 THR 155 ARG 156 ALA 157 LEU 158 ALA 159 LYS 160 GLU 161 TRP 162 ALA 163 ARG 164 LEU 165 GLY 166 ILE 167 ARG 168 VAL 169 ASN 170 LEU 171 LEU 172 CYS 173 PRO 174 GLY 175 TYR 176 VAL 177 GLU 178 THR 179 GLU 180 PHE 181 THR 182 LEU 183 PRO 184 LEU 185 ARG 186 GLN 187 ASN 188 PRO 189 GLU 190 LEU 191 TYR 192 GLU 193 PRO 194 ILE 195 THR 196 ALA 197 ARG 198 ILE 199 PRO 200 MET 201 GLY 202 ARG 203 TRP 204 ALA 205 ARG 206 PRO 207 GLU 208 GLU 209 ILE 210 ALA 211 ARG 212 VAL 213 ALA 214 ALA 215 VAL 216 LEU 217 CYS 218 GLY 219 ASP 220 GLU 221 ALA 222 GLU 223 TYR 224 LEU 225 THR 226 GLY 227 GLN 228 ALA 229 VAL 230 ALA 231 VAL 232 ASP 233 GLY 234 GLY 235 PHE 236 LEU 237 ALA 238 TYR 239
Unit 3	GLU 2 ARG 3 LYS 4 ALA 5 LEU 6 VAL 7 THR 8 GLY 9 GLY 10 SER 11 ARG 12 GLY 13 ILE 14 GLY 15 ARG 16 ALA 17 ILE 18 ALA 19 GLU 20 ALA 21 LEU 22 VAL 23 ALA 24 ARG 25 GLY 26 TYR 27 ARG 28 VAL 29 ALA 30 ILE 31 ALA 32 SER 33 ARG 34 ASN 35 PRO 36 GLU 37 GLU 38 ALA 39 ALA 40 GLN 41 SER 42 LEU 43 GLY 44 ALA 45 VAL 46 PRO 47 LEU 48 PRO 49 THR 50 ASP 51 LEU 52 GLU 53 LYS 54 ASP 55 ASP 56 PRO 57 LYS 58 GLY 59 LEU 60 VAL 61 LYS 62 ARG 63 ALA 64 LEU 65 GLU 66 ALA 67 LEU 68 GLY 69 GLY 70 LEU 71 HIS 72 VAL 73 LEU 74 VAL 75 HIS 76 ALA 77 ALA 78 ALA 79 VAL 80 ASN 81 VAL 82 ARG 83 LYS 84 PRO 85 ALA 86 LEU 87 GLU 88 LEU 89 SER 90 TYR 91 GLU 92 GLU 93 TRP 94 ARG 95 ARG 96 VAL 97 LEU 98 TYR 99 LEU 100 HIS 101 LEU 102 ASP 103 VAL 104 ALA 105 PHE 106 LEU 107 LEU 108 ALA 109 GLN 110 ALA 111 ALA 112 ALA 113 PRO 114 HIS 115 MET 116 ALA 117 GLU 118 ALA 119 GLY 120 TRP 121 GLY 122 ARG 123 VAL 124 LEU 125 PHE 126 ILE 127 GLY 128 SER 129 VAL 130 THR 131 THR 132 PHE 133 THR 134 ALA 135 GLY 136 GLY 137 PRO 138 VAL 139 PRO 140 ILE 141 PRO 142 ALA 143 TYR 144 THR 145 THR 146 ALA 147 LYS 148 THR 149 ALA 150 LEU 151 LEU 152 GLY 153 LEU 154 THR 155 ARG 156 ALA 157 LEU 158 ALA 159 LYS 160 GLU 161 TRP 162 ALA 163 ARG 164 LEU 165 GLY 166 ILE 167 ARG 168 VAL 169 ASN 170 LEU 171 LEU 172 CYS 173 PRO 174 GLY 175 TYR 176 VAL 177 GLU 178 THR 179 GLU 180 PHE 181 THR 182 LEU 183 PRO 184 LEU 185 ARG 186 GLN 187 ASN 188 PRO 189 GLU 190 LEU 191 TYR 192 GLU 193 PRO 194 ILE 195 THR 196 ALA 197 ARG 198 ILE 199 PRO 200 MET 201 GLY 202 ARG 203 TRP 204 ALA 205 ARG 206 PRO 207 GLU 208 GLU 209 ILE 210 ALA 211 ARG 212 VAL 213 ALA 214 ALA 215 VAL 216 LEU 217 CYS 218 GLY 219 ASP 220 GLU 221 ALA 222 GLU 223 TYR 224 LEU 225 THR 226 GLY 227 GLN 228 ALA 229 VAL 230 ALA 231 VAL 232 ASP 233 GLY 234 GLY 235 PHE 236 LEU 237 ALA 238 TYR 239
Unit 4	GLU 2 ARG 3 LYS 4 ALA 5 LEU 6 VAL 7 THR 8 GLY 9 GLY 10 SER 11 ARG 12 GLY 13 ILE 14 GLY 15 ARG 16 ALA 17 ILE 18 ALA 19 GLU 20 ALA 21 LEU 22 VAL 23 ALA 24 ARG 25 GLY 26 TYR 27 ARG 28 VAL 29 ALA 30 ILE 31 ALA 32 SER 33 ARG 34 ASN 35 PRO 36 GLU 37 GLU 38 ALA 39 ALA 40 GLN 41 SER 42 LEU 43 GLY 44 ALA 45 VAL 46 PRO 47 LEU 48 PRO 49 THR 50 ASP 51 LEU 52 GLU 53 LYS 54 ASP 55 ASP 56 PRO 57 LYS 58 GLY 59 LEU 60 VAL 61 LYS 62 ARG 63 ALA 64 LEU 65 GLU 66 ALA 67 LEU 68 GLY 69 GLY 70 LEU 71 HIS 72 VAL 73 LEU 74 VAL 75 HIS 76 ALA 77 ALA 78 ALA 79 VAL 80 ASN 81 VAL 82 ARG 83 LYS 84 PRO 85 ALA 86 LEU 87 GLU 88 LEU 89 SER 90 TYR 91 GLU 92 GLU 93 TRP 94 ARG 95 ARG 96 VAL 97 LEU 98 TYR 99 LEU 100 HIS 101 LEU 102 ASP 103 VAL 104 ALA 105 PHE 106 LEU 107 LEU 108 ALA 109 GLN 110 ALA 111 ALA 112 ALA 113 PRO 114 HIS 115 MET 116 ALA 117 GLU 118 ALA 119 GLY 120 TRP 121 GLY 122 ARG 123 VAL 124 LEU 125 PHE 126 ILE 127 GLY 128 SER 129 VAL 130 THR 131 THR 132 PHE 133 THR 134 ALA 135 GLY 136 GLY 137 PRO 138 VAL 139 PRO 140 ILE 141 PRO 142 ALA 143 TYR 144 THR 145 THR 146 ALA 147 LYS 148 THR 149 ALA 150 LEU 151 LEU 152 GLY 153 LEU 154 THR 155 ARG 156 ALA 157 LEU 158 ALA 159 LYS 160 GLU 161 TRP 162 ALA 163 ARG 164 LEU 165 GLY 166 ILE 167 ARG 168 VAL 169 ASN 170 LEU 171 LEU 172 CYS 173 PRO 174 GLY 175 TYR 176 VAL 177 GLU 178 THR 179 GLU 190 LEU 191 TYR 192 GLU 193 PRO 194 ILE 195 THR 196 ALA 197 ARG 198 ILE 199 PRO 200 MET 201 GLY 202 ARG 203 TRP 204 ALA 205 ARG 206 PRO 207 GLU 208 GLU 209 ILE 210 ALA 211 ARG 212 VAL 213 ALA 214 ALA 215 VAL 216 LEU 217 CYS 218 GLY 219 ASP 220 GLU 221 ALA 222 GLU 223 TYR 224 LEU 225 THR 226 GLY 227 GLN 228 ALA 229 VAL 230 ALA 231 VAL 232 ASP 233 GLY 234 GLY 235 PHE 236 LEU 237 ALA 238 TYR 239

Ligands

Unit 5	GOL 1288 SO4 2002
Unit 6	GOL 1287 SO4 2001 SO4 2004 SO4 2005 SO4 2006 SO4 2009
Unit 7	SO4 2003 SO4 2007 SO4 2008