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Title | CRYSTAL STRUCTURE OF THE DNA REPAIR ENZYME ENDONUCLEASE-VIII FROM E. COLI IN COMPLEX WITH AP-SITE CONTAINING DNA SUBSTRA | |
Keywords | ENDONUCLEASE VIII, OXIDATIVE DAMAGE, DNA REPAIR, BASE EXCISI COVALENT INTERMEDIATE, REACTION MECHANISM, HYDROLASE-DNA CO | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2EA0 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | ENDONUCLEASE VIII | A | 254 | 2032 | 0 |
2 | Other macromolecule | 5'-D(P*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*G)-3' | B | 12 | 243 | 0 |
3 | Other macromolecule | C | 12 | 229 | 11 | |
4 | Ligand | ENDONUCLEASE VIII | A | 6 | 0 | 27 |
5 | Ligand | C | 1 | 0 | 5 | |
6 | Water | 412 | 0 | 412 | ||
total | 697 | 2504 | 455 |
Unit 1 | PRO1 GLU2 GLY3 PRO4 GLU5 ILE6 ARG7 ARG8 ALA9 ALA10 ASP11 ASN12 LEU13 GLU14 ALA15 ALA16 ILE17 LYS18 GLY19 LYS20 PRO21 LEU22 THR23 ASP24 VAL25 TRP26 PHE27 ALA28 PHE29 PRO30 GLN31 LEU32 LYS33 THR34 TYR35 GLN36 SER37 GLN38 LEU39 ILE40 GLY41 GLN42 HIS43 VAL44 THR45 HIS46 VAL47 GLU48 THR49 ARG50 GLY51 LYS52 ALA53 LEU54 LEU55 THR56 HIS57 PHE58 SER59 ASN60 ASP61 LEU62 THR63 LEU64 TYR65 SER66 HIS67 ASN68 GLN69 LEU70 TYR71 GLY72 VAL73 TRP74 ARG75 VAL76 VAL77 ASP78 THR79 GLY80 GLU81 GLU82 PRO83 GLN84 THR85 THR86 ARG87 VAL88 LEU89 ARG90 VAL91 LYS92 LEU93 GLN94 THR95 ALA96 ASP97 LYS98 THR99 ILE100 LEU101 LEU102 TYR103 SER104 ALA105 SER106 ASP107 ILE108 GLU109 MET110 LEU111 ARG112 PRO113 GLU114 GLN115 LEU116 THR117 THR118 HIS119 PRO120 PHE121 LEU122 GLN123 ARG124 VAL125 GLY126 PRO127 ASP128 VAL129 LEU130 ASP131 PRO132 ASN133 LEU134 THR135 PRO136 GLU137 VAL138 VAL139 LYS140 GLU141 ARG142 LEU143 LEU144 SER145 PRO146 ARG147 PHE148 ARG149 ASN150 ARG151 GLN152 PHE153 ALA154 GLY155 LEU156 LEU157 LEU158 ASP159 GLN160 ALA161 PHE162 LEU163 ALA164 GLY165 LEU166 GLY167 ASN168 TYR169 LEU170 ARG171 VAL172 GLU173 ILE174 LEU175 TRP176 GLN177 VAL178 GLY179 LEU180 THR181 GLY182 ASN183 HIS184 LYS185 ALA186 LYS187 ASP188 LEU189 ASN190 ALA191 ALA192 GLN193 LEU194 ASP195 ALA196 LEU197 ALA198 HIS199 ALA200 LEU201 LEU202 GLU203 ILE204 PRO205 ARG206 PHE207 SER208 TYR209 ALA210 THR211 ARG212 GLY213 GLN214 ALA223 LEU224 PHE225 ARG226 PHE227 LYS228 VAL229 PHE230 HIS231 ARG232 ASP233 GLY234 GLU235 PRO236 CYS237 GLU238 ARG239 CYS240 GLY241 SER242 ILE243 ILE244 GLU245 LYS246 THR247 THR248 LEU249 SER250 SER251 ARG252 PRO253 PHE254 TYR255 TRP256 CYS257 PRO258 GLY259 CYS260 GLN261 HIS262 |
Unit 2 | DG401 DG402 DC403 DT404 DT405 DC406 DA407 DT408 DC409 DC410 DT411 DG412 |
Unit 3 | DC422 DA423 DG424 DG425 DA426 PED427 DG428 DA429 DA430 DG431 DC432 DC433 |
Unit 4 | ZN501 GOL511 SO4551 SO4553 SO4554 SO4555 |
Unit 5 | SO4552 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |