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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN D-AMINO ACID OXIDASE: SUBSTRATE- FREE HOLOENZYME
Keywords STRUCTURALLY AMBIVALENT PEPTIDE, SUBSTRATE-FREE HOLOENZYME, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2E48     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   D-AMINO-ACID OXIDASE  A 340 2733 0
2  Protein   D-AMINO-ACID OXIDASE  B 340 2733 0
3  Protein   D-AMINO-ACID OXIDASE  C 340 2733 0
4  Protein   D-AMINO-ACID OXIDASE  D 340 2733 0
5  Ligand   D-AMINO-ACID OXIDASE  A 1 0 53
6  Ligand   D-AMINO-ACID OXIDASE  B 1 0 53
7  Ligand   D-AMINO-ACID OXIDASE  C 1 0 53
8  Ligand   D-AMINO-ACID OXIDASE  D 1 0 53
9 Water     134 0 134
total       1498 10932 346

Proteins
Unit 1 MET1 ARG2 VAL3 VAL4 VAL5 ILE6 GLY7 ALA8 GLY9 VAL10 ILE11 GLY12 LEU13 SER14 THR15 ALA16 LEU17 CYS18 ILE19 HIS20 GLU21 ARG22 TYR23 HIS24 SER25 VAL26 LEU27 GLN28 PRO29 LEU30 ASP31 ILE32 LYS33 VAL34 TYR35 ALA36 ASP37 ARG38 PHE39 THR40 PRO41 LEU42 THR43 THR44 THR45 ASP46 VAL47 ALA48 ALA49 GLY50 LEU51 TRP52 GLN53 PRO54 TYR55 LEU56 SER57 ASP58 PRO59 ASN60 ASN61 PRO62 GLN63 GLU64 ALA65 ASP66 TRP67 SER68 GLN69 GLN70 THR71 PHE72 ASP73 TYR74 LEU75 LEU76 SER77 HIS78 VAL79 HIS80 SER81 PRO82 ASN83 ALA84 GLU85 ASN86 LEU87 GLY88 LEU89 PHE90 LEU91 ILE92 SER93 GLY94 TYR95 ASN96 LEU97 PHE98 HIS99 GLU100 ALA101 ILE102 PRO103 ASP104 PRO105 SER106 TRP107 LYS108 ASP109 THR110 VAL111 LEU112 GLY113 PHE114 ARG115 LYS116 LEU117 THR118 PRO119 ARG120 GLU121 LEU122 ASP123 MET124 PHE125 PRO126 ASP127 TYR128 GLY129 TYR130 GLY131 TRP132 PHE133 HIS134 THR135 SER136 LEU137 ILE138 LEU139 GLU140 GLY141 LYS142 ASN143 TYR144 LEU145 GLN146 TRP147 LEU148 THR149 GLU150 ARG151 LEU152 THR153 GLU154 ARG155 GLY156 VAL157 LYS158 PHE159 PHE160 GLN161 ARG162 LYS163 VAL164 GLU165 SER166 PHE167 GLU168 GLU169 VAL170 ALA171 ARG172 GLU173 GLY174 ALA175 ASP176 VAL177 ILE178 VAL179 ASN180 CYS181 THR182 GLY183 VAL184 TRP185 ALA186 GLY187 ALA188 LEU189 GLN190 ARG191 ASP192 PRO193 LEU194 LEU195 GLN196 PRO197 GLY198 ARG199 GLY200 GLN201 ILE202 MET203 LYS204 VAL205 ASP206 ALA207 PRO208 TRP209 MET210 LYS211 HIS212 PHE213 ILE214 LEU215 THR216 HIS217 ASP218 PRO219 GLU220 ARG221 GLY222 ILE223 TYR224 ASN225 SER226 PRO227 TYR228 ILE229 ILE230 PRO231 GLY232 THR233 GLN234 THR235 VAL236 THR237 LEU238 GLY239 GLY240 ILE241 PHE242 GLN243 LEU244 GLY245 ASN246 TRP247 SER248 GLU249 LEU250 ASN251 ASN252 ILE253 GLN254 ASP255 HIS256 ASN257 THR258 ILE259 TRP260 GLU261 GLY262 CYS263 CYS264 ARG265 LEU266 GLU267 PRO268 THR269 LEU270 LYS271 ASN272 ALA273 ARG274 ILE275 ILE276 GLY277 GLU278 ARG279 THR280 GLY281 PHE282 ARG283 PRO284 VAL285 ARG286 PRO287 GLN288 ILE289 ARG290 LEU291 GLU292 ARG293 GLU294 GLN295 LEU296 ARG297 THR298 GLY299 PRO300 SER301 ASN302 THR303 GLU304 VAL305 ILE306 HIS307 ASN308 TYR309 GLY310 HIS311 GLY312 GLY313 TYR314 GLY315 LEU316 THR317 ILE318 HIS319 TRP320 GLY321 CYS322 ALA323 LEU324 GLU325 ALA326 ALA327 LYS328 LEU329 PHE330 GLY331 ARG332 ILE333 LEU334 GLU335 GLU336 LYS337 LYS338 LEU339 SER340
Unit 2 MET1001 ARG1002 VAL1003 VAL1004 VAL1005 ILE1006 GLY1007 ALA1008 GLY1009 VAL1010 ILE1011 GLY1012 LEU1013 SER1014 THR1015 ALA1016 LEU1017 CYS1018 ILE1019 HIS1020 GLU1021 ARG1022 TYR1023 HIS1024 SER1025 VAL1026 LEU1027 GLN1028 PRO1029 LEU1030 ASP1031 ILE1032 LYS1033 VAL1034 TYR1035 ALA1036 ASP1037 ARG1038 PHE1039 THR1040 PRO1041 LEU1042 THR1043 THR1044 THR1045 ASP1046 VAL1047 ALA1048 ALA1049 GLY1050 LEU1051 TRP1052 GLN1053 PRO1054 TYR1055 LEU1056 SER1057 ASP1058 PRO1059 ASN1060 ASN1061 PRO1062 GLN1063 GLU1064 ALA1065 ASP1066 TRP1067 SER1068 GLN1069 GLN1070 THR1071 PHE1072 ASP1073 TYR1074 LEU1075 LEU1076 SER1077 HIS1078 VAL1079 HIS1080 SER1081 PRO1082 ASN1083 ALA1084 GLU1085 ASN1086 LEU1087 GLY1088 LEU1089 PHE1090 LEU1091 ILE1092 SER1093 GLY1094 TYR1095 ASN1096 LEU1097 PHE1098 HIS1099 GLU1100 ALA1101 ILE1102 PRO1103 ASP1104 PRO1105 SER1106 TRP1107 LYS1108 ASP1109 THR1110 VAL1111 LEU1112 GLY1113 PHE1114 ARG1115 LYS1116 LEU1117 THR1118 PRO1119 ARG1120 GLU1121 LEU1122 ASP1123 MET1124 PHE1125 PRO1126 ASP1127 TYR1128 GLY1129 TYR1130 GLY1131 TRP1132 PHE1133 HIS1134 THR1135 SER1136 LEU1137 ILE1138 LEU1139 GLU1140 GLY1141 LYS1142 ASN1143 TYR1144 LEU1145 GLN1146 TRP1147 LEU1148 THR1149 GLU1150 ARG1151 LEU1152 THR1153 GLU1154 ARG1155 GLY1156 VAL1157 LYS1158 PHE1159 PHE1160 GLN1161 ARG1162 LYS1163 VAL1164 GLU1165 SER1166 PHE1167 GLU1168 GLU1169 VAL1170 ALA1171 ARG1172 GLU1173 GLY1174 ALA1175 ASP1176 VAL1177 ILE1178 VAL1179 ASN1180 CYS1181 THR1182 GLY1183 VAL1184 TRP1185 ALA1186 GLY1187 ALA1188 LEU1189 GLN1190 ARG1191 ASP1192 PRO1193 LEU1194 LEU1195 GLN1196 PRO1197 GLY1198 ARG1199 GLY1200 GLN1201 ILE1202 MET1203 LYS1204 VAL1205 ASP1206 ALA1207 PRO1208 TRP1209 MET1210 LYS1211 HIS1212 PHE1213 ILE1214 LEU1215 THR1216 HIS1217 ASP1218 PRO1219 GLU1220 ARG1221 GLY1222 ILE1223 TYR1224 ASN1225 SER1226 PRO1227 TYR1228 ILE1229 ILE1230 PRO1231 GLY1232 THR1233 GLN1234 THR1235 VAL1236 THR1237 LEU1238 GLY1239 GLY1240 ILE1241 PHE1242 GLN1243 LEU1244 GLY1245 ASN1246 TRP1247 SER1248 GLU1249 LEU1250 ASN1251 ASN1252 ILE1253 GLN1254 ASP1255 HIS1256 ASN1257 THR1258 ILE1259 TRP1260 GLU1261 GLY1262 CYS1263 CYS1264 ARG1265 LEU1266 GLU1267 PRO1268 THR1269 LEU1270 LYS1271 ASN1272 ALA1273 ARG1274 ILE1275 ILE1276 GLY1277 GLU1278 ARG1279 THR1280 GLY1281 PHE1282 ARG1283 PRO1284 VAL1285 ARG1286 PRO1287 GLN1288 ILE1289 ARG1290 LEU1291 GLU1292 ARG1293 GLU1294 GLN1295 LEU1296 ARG1297 THR1298 GLY1299 PRO1300 SER1301 ASN1302 THR1303 GLU1304 VAL1305 ILE1306 HIS1307 ASN1308 TYR1309 GLY1310 HIS1311 GLY1312 GLY1313 TYR1314 GLY1315 LEU1316 THR1317 ILE1318 HIS1319 TRP1320 GLY1321 CYS1322 ALA1323 LEU1324 GLU1325 ALA1326 ALA1327 LYS1328 LEU1329 PHE1330 GLY1331 ARG1332 ILE1333 LEU1334 GLU1335 GLU1336 LYS1337 LYS1338 LEU1339 SER1340
Unit 3 MET2001 ARG2002 VAL2003 VAL2004 VAL2005 ILE2006 GLY2007 ALA2008 GLY2009 VAL2010 ILE2011 GLY2012 LEU2013 SER2014 THR2015 ALA2016 LEU2017 CYS2018 ILE2019 HIS2020 GLU2021 ARG2022 TYR2023 HIS2024 SER2025 VAL2026 LEU2027 GLN2028 PRO2029 LEU2030 ASP2031 ILE2032 LYS2033 VAL2034 TYR2035 ALA2036 ASP2037 ARG2038 PHE2039 THR2040 PRO2041 LEU2042 THR2043 THR2044 THR2045 ASP2046 VAL2047 ALA2048 ALA2049 GLY2050 LEU2051 TRP2052 GLN2053 PRO2054 TYR2055 LEU2056 SER2057 ASP2058 PRO2059 ASN2060 ASN2061 PRO2062 GLN2063 GLU2064 ALA2065 ASP2066 TRP2067 SER2068 GLN2069 GLN2070 THR2071 PHE2072 ASP2073 TYR2074 LEU2075 LEU2076 SER2077 HIS2078 VAL2079 HIS2080 SER2081 PRO2082 ASN2083 ALA2084 GLU2085 ASN2086 LEU2087 GLY2088 LEU2089 PHE2090 LEU2091 ILE2092 SER2093 GLY2094 TYR2095 ASN2096 LEU2097 PHE2098 HIS2099 GLU2100 ALA2101 ILE2102 PRO2103 ASP2104 PRO2105 SER2106 TRP2107 LYS2108 ASP2109 THR2110 VAL2111 LEU2112 GLY2113 PHE2114 ARG2115 LYS2116 LEU2117 THR2118 PRO2119 ARG2120 GLU2121 LEU2122 ASP2123 MET2124 PHE2125 PRO2126 ASP2127 TYR2128 GLY2129 TYR2130 GLY2131 TRP2132 PHE2133 HIS2134 THR2135 SER2136 LEU2137 ILE2138 LEU2139 GLU2140 GLY2141 LYS2142 ASN2143 TYR2144 LEU2145 GLN2146 TRP2147 LEU2148 THR2149 GLU2150 ARG2151 LEU2152 THR2153 GLU2154 ARG2155 GLY2156 VAL2157 LYS2158 PHE2159 PHE2160 GLN2161 ARG2162 LYS2163 VAL2164 GLU2165 SER2166 PHE2167 GLU2168 GLU2169 VAL2170 ALA2171 ARG2172 GLU2173 GLY2174 ALA2175 ASP2176 VAL2177 ILE2178 VAL2179 ASN2180 CYS2181 THR2182 GLY2183 VAL2184 TRP2185 ALA2186 GLY2187 ALA2188 LEU2189 GLN2190 ARG2191 ASP2192 PRO2193 LEU2194 LEU2195 GLN2196 PRO2197 GLY2198 ARG2199 GLY2200 GLN2201 ILE2202 MET2203 LYS2204 VAL2205 ASP2206 ALA2207 PRO2208 TRP2209 MET2210 LYS2211 HIS2212 PHE2213 ILE2214 LEU2215 THR2216 HIS2217 ASP2218 PRO2219 GLU2220 ARG2221 GLY2222 ILE2223 TYR2224 ASN2225 SER2226 PRO2227 TYR2228 ILE2229 ILE2230 PRO2231 GLY2232 THR2233 GLN2234 THR2235 VAL2236 THR2237 LEU2238 GLY2239 GLY2240 ILE2241 PHE2242 GLN2243 LEU2244 GLY2245 ASN2246 TRP2247 SER2248 GLU2249 LEU2250 ASN2251 ASN2252 ILE2253 GLN2254 ASP2255 HIS2256 ASN2257 THR2258 ILE2259 TRP2260 GLU2261 GLY2262 CYS2263 CYS2264 ARG2265 LEU2266 GLU2267 PRO2268 THR2269 LEU2270 LYS2271 ASN2272 ALA2273 ARG2274 ILE2275 ILE2276 GLY2277 GLU2278 ARG2279 THR2280 GLY2281 PHE2282 ARG2283 PRO2284 VAL2285 ARG2286 PRO2287 GLN2288 ILE2289 ARG2290 LEU2291 GLU2292 ARG2293 GLU2294 GLN2295 LEU2296 ARG2297 THR2298 GLY2299 PRO2300 SER2301 ASN2302 THR2303 GLU2304 VAL2305 ILE2306 HIS2307 ASN2308 TYR2309 GLY2310 HIS2311 GLY2312 GLY2313 TYR2314 GLY2315 LEU2316 THR2317 ILE2318 HIS2319 TRP2320 GLY2321 CYS2322 ALA2323 LEU2324 GLU2325 ALA2326 ALA2327 LYS2328 LEU2329 PHE2330 GLY2331 ARG2332 ILE2333 LEU2334 GLU2335 GLU2336 LYS2337 LYS2338 LEU2339 SER2340
Unit 4 MET3001 ARG3002 VAL3003 VAL3004 VAL3005 ILE3006 GLY3007 ALA3008 GLY3009 VAL3010 ILE3011 GLY3012 LEU3013 SER3014 THR3015 ALA3016 LEU3017 CYS3018 ILE3019 HIS3020 GLU3021 ARG3022 TYR3023 HIS3024 SER3025 VAL3026 LEU3027 GLN3028 PRO3029 LEU3030 ASP3031 ILE3032 LYS3033 VAL3034 TYR3035 ALA3036 ASP3037 ARG3038 PHE3039 THR3040 PRO3041 LEU3042 THR3043 THR3044 THR3045 ASP3046 VAL3047 ALA3048 ALA3049 GLY3050 LEU3051 TRP3052 GLN3053 PRO3054 TYR3055 LEU3056 SER3057 ASP3058 PRO3059 ASN3060 ASN3061 PRO3062 GLN3063 GLU3064 ALA3065 ASP3066 TRP3067 SER3068 GLN3069 GLN3070 THR3071 PHE3072 ASP3073 TYR3074 LEU3075 LEU3076 SER3077 HIS3078 VAL3079 HIS3080 SER3081 PRO3082 ASN3083 ALA3084 GLU3085 ASN3086 LEU3087 GLY3088 LEU3089 PHE3090 LEU3091 ILE3092 SER3093 GLY3094 TYR3095 ASN3096 LEU3097 PHE3098 HIS3099 GLU3100 ALA3101 ILE3102 PRO3103 ASP3104 PRO3105 SER3106 TRP3107 LYS3108 ASP3109 THR3110 VAL3111 LEU3112 GLY3113 PHE3114 ARG3115 LYS3116 LEU3117 THR3118 PRO3119 ARG3120 GLU3121 LEU3122 ASP3123 MET3124 PHE3125 PRO3126 ASP3127 TYR3128 GLY3129 TYR3130 GLY3131 TRP3132 PHE3133 HIS3134 THR3135 SER3136 LEU3137 ILE3138 LEU3139 GLU3140 GLY3141 LYS3142 ASN3143 TYR3144 LEU3145 GLN3146 TRP3147 LEU3148 THR3149 GLU3150 ARG3151 LEU3152 THR3153 GLU3154 ARG3155 GLY3156 VAL3157 LYS3158 PHE3159 PHE3160 GLN3161 ARG3162 LYS3163 VAL3164 GLU3165 SER3166 PHE3167 GLU3168 GLU3169 VAL3170 ALA3171 ARG3172 GLU3173 GLY3174 ALA3175 ASP3176 VAL3177 ILE3178 VAL3179 ASN3180 CYS3181 THR3182 GLY3183 VAL3184 TRP3185 ALA3186 GLY3187 ALA3188 LEU3189 GLN3190 ARG3191 ASP3192 PRO3193 LEU3194 LEU3195 GLN3196 PRO3197 GLY3198 ARG3199 GLY3200 GLN3201 ILE3202 MET3203 LYS3204 VAL3205 ASP3206 ALA3207 PRO3208 TRP3209 MET3210 LYS3211 HIS3212 PHE3213 ILE3214 LEU3215 THR3216 HIS3217 ASP3218 PRO3219 GLU3220 ARG3221 GLY3222 ILE3223 TYR3224 ASN3225 SER3226 PRO3227 TYR3228 ILE3229 ILE3230 PRO3231 GLY3232 THR3233 GLN3234 THR3235 VAL3236 THR3237 LEU3238 GLY3239 GLY3240 ILE3241 PHE3242 GLN3243 LEU3244 GLY3245 ASN3246 TRP3247 SER3248 GLU3249 LEU3250 ASN3251 ASN3252 ILE3253 GLN3254 ASP3255 HIS3256 ASN3257 THR3258 ILE3259 TRP3260 GLU3261 GLY3262 CYS3263 CYS3264 ARG3265 LEU3266 GLU3267 PRO3268 THR3269 LEU3270 LYS3271 ASN3272 ALA3273 ARG3274 ILE3275 ILE3276 GLY3277 GLU3278 ARG3279 THR3280 GLY3281 PHE3282 ARG3283 PRO3284 VAL3285 ARG3286 PRO3287 GLN3288 ILE3289 ARG3290 LEU3291 GLU3292 ARG3293 GLU3294 GLN3295 LEU3296 ARG3297 THR3298 GLY3299 PRO3300 SER3301 ASN3302 THR3303 GLU3304 VAL3305 ILE3306 HIS3307 ASN3308 TYR3309 GLY3310 HIS3311 GLY3312 GLY3313 TYR3314 GLY3315 LEU3316 THR3317 ILE3318 HIS3319 TRP3320 GLY3321 CYS3322 ALA3323 LEU3324 GLU3325 ALA3326 ALA3327 LYS3328 LEU3329 PHE3330 GLY3331 ARG3332 ILE3333 LEU3334 GLU3335 GLU3336 LYS3337 LYS3338 LEU3339 SER3340

Ligands
Unit 5 FAD351
Unit 6 FAD1351
Unit 7 FAD2351
Unit 8 FAD3351

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany