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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE MUTANT K184A OF D-TARTRATE DEHYDRATASE FROM BRADYRHIZOBIUM JAPONICUM COMPLEXED WITH MG++ AND D-TARTRATE
Keywords D-TARTRATE DEHYDRATASE, ENOLASE SUPERFAMILY, D-TARTRATE, L- TARTRATE, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2DW6     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BLL6730 PROTEIN  A 388 3018 0
2  Protein   BLL6730 PROTEIN  B 388 3018 0
3  Protein   BLL6730 PROTEIN  C 388 3018 0
4  Protein   BLL6730 PROTEIN  D 388 3018 0
5  Ligand   BLL6730 PROTEIN  A 2 0 11
6  Ligand   BLL6730 PROTEIN  B 2 0 11
7  Ligand   BLL6730 PROTEIN  C 2 0 11
8  Ligand   BLL6730 PROTEIN  D 2 0 11
9 Water     466 0 466
total       2026 12072 510
Proteins
Unit 1 SER2 VAL3 ARG4 ILE5 VAL6 ASP7 VAL8 ARG9 GLU10 ILE11 THR12 LYS13 PRO14 ILE15 SER16 SER17 PRO18 ILE19 ARG20 ASN21 ALA22 TYR23 ILE24 ASP25 PHE26 THR27 LYS28 MET29 THR30 THR31 SER32 LEU33 VAL34 ALA35 VAL36 VAL37 THR38 ASP39 VAL40 VAL41 ARG42 GLU43 GLY44 LYS45 ARG46 VAL47 VAL48 GLY49 TYR50 GLY51 PHE52 ASN53 SER54 ASN55 GLY56 ARG57 TYR58 GLY59 GLN60 GLY61 GLY62 LEU63 ILE64 ARG65 GLU66 ARG67 PHE68 ALA69 SER70 ARG71 ILE72 LEU73 GLU74 ALA75 ASP76 PRO77 LYS78 LYS79 LEU80 LEU81 ASN82 GLU83 ALA84 GLY85 ASP86 ASN87 LEU88 ASP89 PRO90 ASP91 LYS92 VAL93 TRP94 ALA95 ALA96 MET97 MET98 ILE99 ASN100 GLU101 LYS102 PRO103 GLY104 GLY105 HIS106 GLY107 GLU108 ARG109 SER110 VAL111 ALA112 VAL113 GLY114 THR115 ILE116 ASP117 MET118 ALA119 VAL120 TRP121 ASP122 ALA123 VAL124 ALA125 LYS126 ILE127 ALA128 GLY129 LYS130 PRO131 LEU132 PHE133 ARG134 LEU135 LEU136 ALA137 GLU138 ARG139 HIS140 GLY141 VAL142 LYS143 ALA144 ASN145 PRO146 ARG147 VAL148 PHE149 VAL150 TYR151 ALA152 ALA153 GLY154 GLY155 TYR156 TYR157 TYR158 PRO159 GLY160 LYS161 GLY162 LEU163 SER164 MET165 LEU166 ARG167 GLY168 GLU169 MET170 ARG171 GLY172 TYR173 LEU174 ASP175 ARG176 GLY177 TYR178 ASN179 VAL180 VAL181 LYS182 MET183 ALA184 ILE185 GLY186 GLY187 ALA188 PRO189 ILE190 GLU191 GLU192 ASP193 ARG194 MET195 ARG196 ILE197 GLU198 ALA199 VAL200 LEU201 GLU202 GLU203 ILE204 GLY205 LYS206 ASP207 ALA208 GLN209 LEU210 ALA211 VAL212 ASP213 ALA214 ASN215 GLY216 ARG217 PHE218 ASN219 LEU220 GLU221 THR222 GLY223 ILE224 ALA225 TYR226 ALA227 LYS228 MET229 LEU230 ARG231 ASP232 TYR233 PRO234 LEU235 PHE236 TRP237 TYR238 GLU239 GLU240 VAL241 GLY242 ASP243 PRO244 LEU245 ASP246 TYR247 ALA248 LEU249 GLN250 ALA251 ALA252 LEU253 ALA254 GLU255 PHE256 TYR257 PRO258 GLY259 PRO260 MET261 ALA262 THR263 GLY264 GLU265 ASN266 LEU267 PHE268 SER269 HIS270 GLN271 ASP272 ALA273 ARG274 ASN275 LEU276 LEU277 ARG278 TYR279 GLY280 GLY281 MET282 ARG283 PRO284 ASP285 ARG286 ASP287 TRP288 LEU289 GLN290 PHE291 ASP292 CYS293 ALA294 LEU295 SER296 TYR297 GLY298 LEU299 CYS300 GLU301 TYR302 GLN303 ARG304 THR305 LEU306 GLU307 VAL308 LEU309 LYS310 THR311 HIS312 GLY313 TRP314 SER315 PRO316 SER317 ARG318 CYS319 ILE320 PRO321 HIS322 GLY323 GLY324 HIS325 GLN326 MET327 SER328 LEU329 ASN330 ILE331 ALA332 ALA333 GLY334 LEU335 GLY336 LEU337 GLY338 GLY339 ASN340 GLU341 SER342 TYR343 PRO344 ASP345 LEU346 PHE347 GLN348 PRO349 TYR350 GLY351 GLY352 PHE353 PRO354 ASP355 GLY356 VAL357 ARG358 VAL359 GLU360 ASN361 GLY362 HIS363 ILE364 THR365 MET366 PRO367 ASP368 LEU369 PRO370 GLY371 ILE372 GLY373 PHE374 GLU375 GLY376 LYS377 SER378 ASP379 LEU380 TYR381 LYS382 GLU383 MET384 LYS385 ALA386 LEU387 ALA388 GLU389
Unit 2 SER2 VAL3 ARG4 ILE5 VAL6 ASP7 VAL8 ARG9 GLU10 ILE11 THR12 LYS13 PRO14 ILE15 SER16 SER17 PRO18 ILE19 ARG20 ASN21 ALA22 TYR23 ILE24 ASP25 PHE26 THR27 LYS28 MET29 THR30 THR31 SER32 LEU33 VAL34 ALA35 VAL36 VAL37 THR38 ASP39 VAL40 VAL41 ARG42 GLU43 GLY44 LYS45 ARG46 VAL47 VAL48 GLY49 TYR50 GLY51 PHE52 ASN53 SER54 ASN55 GLY56 ARG57 TYR58 GLY59 GLN60 GLY61 GLY62 LEU63 ILE64 ARG65 GLU66 ARG67 PHE68 ALA69 SER70 ARG71 ILE72 LEU73 GLU74 ALA75 ASP76 PRO77 LYS78 LYS79 LEU80 LEU81 ASN82 GLU83 ALA84 GLY85 ASP86 ASN87 LEU88 ASP89 PRO90 ASP91 LYS92 VAL93 TRP94 ALA95 ALA96 MET97 MET98 ILE99 ASN100 GLU101 LYS102 PRO103 GLY104 GLY105 HIS106 GLY107 GLU108 ARG109 SER110 VAL111 ALA112 VAL113 GLY114 THR115 ILE116 ASP117 MET118 ALA119 VAL120 TRP121 ASP122 ALA123 VAL124 ALA125 LYS126 ILE127 ALA128 GLY129 LYS130 PRO131 LEU132 PHE133 ARG134 LEU135 LEU136 ALA137 GLU138 ARG139 HIS140 GLY141 VAL142 LYS143 ALA144 ASN145 PRO146 ARG147 VAL148 PHE149 VAL150 TYR151 ALA152 ALA153 GLY154 GLY155 TYR156 TYR157 TYR158 PRO159 GLY160 LYS161 GLY162 LEU163 SER164 MET165 LEU166 ARG167 GLY168 GLU169 MET170 ARG171 GLY172 TYR173 LEU174 ASP175 ARG176 GLY177 TYR178 ASN179 VAL180 VAL181 LYS182 MET183 ALA184 ILE185 GLY186 GLY187 ALA188 PRO189 ILE190 GLU191 GLU192 ASP193 ARG194 MET195 ARG196 ILE197 GLU198 ALA199 VAL200 LEU201 GLU202 GLU203 ILE204 GLY205 LYS206 ASP207 ALA208 GLN209 LEU210 ALA211 VAL212 ASP213 ALA214 ASN215 GLY216 ARG217 PHE218 ASN219 LEU220 GLU221 THR222 GLY223 ILE224 ALA225 TYR226 ALA227 LYS228 MET229 LEU230 ARG231 ASP232 TYR233 PRO234 LEU235 PHE236 TRP237 TYR238 GLU239 GLU240 VAL241 GLY242 ASP243 PRO244 LEU245 ASP246 TYR247 ALA248 LEU249 GLN250 ALA251 ALA252 LEU253 ALA254 GLU255 PHE256 TYR257 PRO258 GLY259 PRO260 MET261 ALA262 THR263 GLY264 GLU265 ASN266 LEU267 PHE268 SER269 HIS270 GLN271 ASP272 ALA273 ARG274 ASN275 LEU276 LEU277 ARG278 TYR279 GLY280 GLY281 MET282 ARG283 PRO284 ASP285 ARG286 ASP287 TRP288 LEU289 GLN290 PHE291 ASP292 CYS293 ALA294 LEU295 SER296 TYR297 GLY298 LEU299 CYS300 GLU301 TYR302 GLN303 ARG304 THR305 LEU306 GLU307 VAL308 LEU309 LYS310 THR311 HIS312 GLY313 TRP314 SER315 PRO316 SER317 ARG318 CYS319 ILE320 PRO321 HIS322 GLY323 GLY324 HIS325 GLN326 MET327 SER328 LEU329 ASN330 ILE331 ALA332 ALA333 GLY334 LEU335 GLY336 LEU337 GLY338 GLY339 ASN340 GLU341 SER342 TYR343 PRO344 ASP345 LEU346 PHE347 GLN348 PRO349 TYR350 GLY351 GLY352 PHE353 PRO354 ASP355 GLY356 VAL357 ARG358 VAL359 GLU360 ASN361 GLY362 HIS363 ILE364 THR365 MET366 PRO367 ASP368 LEU369 PRO370 GLY371 ILE372 GLY373 PHE374 GLU375 GLY376 LYS377 SER378 ASP379 LEU380 TYR381 LYS382 GLU383 MET384 LYS385 ALA386 LEU387 ALA388 GLU389
Unit 3 SER2 VAL3 ARG4 ILE5 VAL6 ASP7 VAL8 ARG9 GLU10 ILE11 THR12 LYS13 PRO14 ILE15 SER16 SER17 PRO18 ILE19 ARG20 ASN21 ALA22 TYR23 ILE24 ASP25 PHE26 THR27 LYS28 MET29 THR30 THR31 SER32 LEU33 VAL34 ALA35 VAL36 VAL37 THR38 ASP39 VAL40 VAL41 ARG42 GLU43 GLY44 LYS45 ARG46 VAL47 VAL48 GLY49 TYR50 GLY51 PHE52 ASN53 SER54 ASN55 GLY56 ARG57 TYR58 GLY59 GLN60 GLY61 GLY62 LEU63 ILE64 ARG65 GLU66 ARG67 PHE68 ALA69 SER70 ARG71 ILE72 LEU73 GLU74 ALA75 ASP76 PRO77 LYS78 LYS79 LEU80 LEU81 ASN82 GLU83 ALA84 GLY85 ASP86 ASN87 LEU88 ASP89 PRO90 ASP91 LYS92 VAL93 TRP94 ALA95 ALA96 MET97 MET98 ILE99 ASN100 GLU101 LYS102 PRO103 GLY104 GLY105 HIS106 GLY107 GLU108 ARG109 SER110 VAL111 ALA112 VAL113 GLY114 THR115 ILE116 ASP117 MET118 ALA119 VAL120 TRP121 ASP122 ALA123 VAL124 ALA125 LYS126 ILE127 ALA128 GLY129 LYS130 PRO131 LEU132 PHE133 ARG134 LEU135 LEU136 ALA137 GLU138 ARG139 HIS140 GLY141 VAL142 LYS143 ALA144 ASN145 PRO146 ARG147 VAL148 PHE149 VAL150 TYR151 ALA152 ALA153 GLY154 GLY155 TYR156 TYR157 TYR158 PRO159 GLY160 LYS161 GLY162 LEU163 SER164 MET165 LEU166 ARG167 GLY168 GLU169 MET170 ARG171 GLY172 TYR173 LEU174 ASP175 ARG176 GLY177 TYR178 ASN179 VAL180 VAL181 LYS182 MET183 ALA184 ILE185 GLY186 GLY187 ALA188 PRO189 ILE190 GLU191 GLU192 ASP193 ARG194 MET195 ARG196 ILE197 GLU198 ALA199 VAL200 LEU201 GLU202 GLU203 ILE204 GLY205 LYS206 ASP207 ALA208 GLN209 LEU210 ALA211 VAL212 ASP213 ALA214 ASN215 GLY216 ARG217 PHE218 ASN219 LEU220 GLU221 THR222 GLY223 ILE224 ALA225 TYR226 ALA227 LYS228 MET229 LEU230 ARG231 ASP232 TYR233 PRO234 LEU235 PHE236 TRP237 TYR238 GLU239 GLU240 VAL241 GLY242 ASP243 PRO244 LEU245 ASP246 TYR247 ALA248 LEU249 GLN250 ALA251 ALA252 LEU253 ALA254 GLU255 PHE256 TYR257 PRO258 GLY259 PRO260 MET261 ALA262 THR263 GLY264 GLU265 ASN266 LEU267 PHE268 SER269 HIS270 GLN271 ASP272 ALA273 ARG274 ASN275 LEU276 LEU277 ARG278 TYR279 GLY280 GLY281 MET282 ARG283 PRO284 ASP285 ARG286 ASP287 TRP288 LEU289 GLN290 PHE291 ASP292 CYS293 ALA294 LEU295 SER296 TYR297 GLY298 LEU299 CYS300 GLU301 TYR302 GLN303 ARG304 THR305 LEU306 GLU307 VAL308 LEU309 LYS310 THR311 HIS312 GLY313 TRP314 SER315 PRO316 SER317 ARG318 CYS319 ILE320 PRO321 HIS322 GLY323 GLY324 HIS325 GLN326 MET327 SER328 LEU329 ASN330 ILE331 ALA332 ALA333 GLY334 LEU335 GLY336 LEU337 GLY338 GLY339 ASN340 GLU341 SER342 TYR343 PRO344 ASP345 LEU346 PHE347 GLN348 PRO349 TYR350 GLY351 GLY352 PHE353 PRO354 ASP355 GLY356 VAL357 ARG358 VAL359 GLU360 ASN361 GLY362 HIS363 ILE364 THR365 MET366 PRO367 ASP368 LEU369 PRO370 GLY371 ILE372 GLY373 PHE374 GLU375 GLY376 LYS377 SER378 ASP379 LEU380 TYR381 LYS382 GLU383 MET384 LYS385 ALA386 LEU387 ALA388 GLU389
Unit 4 SER2 VAL3 ARG4 ILE5 VAL6 ASP7 VAL8 ARG9 GLU10 ILE11 THR12 LYS13 PRO14 ILE15 SER16 SER17 PRO18 ILE19 ARG20 ASN21 ALA22 TYR23 ILE24 ASP25 PHE26 THR27 LYS28 MET29 THR30 THR31 SER32 LEU33 VAL34 ALA35 VAL36 VAL37 THR38 ASP39 VAL40 VAL41 ARG42 GLU43 GLY44 LYS45 ARG46 VAL47 VAL48 GLY49 TYR50 GLY51 PHE52 ASN53 SER54 ASN55 GLY56 ARG57 TYR58 GLY59 GLN60 GLY61 GLY62 LEU63 ILE64 ARG65 GLU66 ARG67 PHE68 ALA69 SER70 ARG71 ILE72 LEU73 GLU74 ALA75 ASP76 PRO77 LYS78 LYS79 LEU80 LEU81 ASN82 GLU83 ALA84 GLY85 ASP86 ASN87 LEU88 ASP89 PRO90 ASP91 LYS92 VAL93 TRP94 ALA95 ALA96 MET97 MET98 ILE99 ASN100 GLU101 LYS102 PRO103 GLY104 GLY105 HIS106 GLY107 GLU108 ARG109 SER110 VAL111 ALA112 VAL113 GLY114 THR115 ILE116 ASP117 MET118 ALA119 VAL120 TRP121 ASP122 ALA123 VAL124 ALA125 LYS126 ILE127 ALA128 GLY129 LYS130 PRO131 LEU132 PHE133 ARG134 LEU135 LEU136 ALA137 GLU138 ARG139 HIS140 GLY141 VAL142 LYS143 ALA144 ASN145 PRO146 ARG147 VAL148 PHE149 VAL150 TYR151 ALA152 ALA153 GLY154 GLY155 TYR156 TYR157 TYR158 PRO159 GLY160 LYS161 GLY162 LEU163 SER164 MET165 LEU166 ARG167 GLY168 GLU169 MET170 ARG171 GLY172 TYR173 LEU174 ASP175 ARG176 GLY177 TYR178 ASN179 VAL180 VAL181 LYS182 MET183 ALA184 ILE185 GLY186 GLY187 ALA188 PRO189 ILE190 GLU191 GLU192 ASP193 ARG194 MET195 ARG196 ILE197 GLU198 ALA199 VAL200 LEU201 GLU202 GLU203 ILE204 GLY205 LYS206 ASP207 ALA208 GLN209 LEU210 ALA211 VAL212 ASP213 ALA214 ASN215 GLY216 ARG217 PHE218 ASN219 LEU220 GLU221 THR222 GLY223 ILE224 ALA225 TYR226 ALA227 LYS228 MET229 LEU230 ARG231 ASP232 TYR233 PRO234 LEU235 PHE236 TRP237 TYR238 GLU239 GLU240 VAL241 GLY242 ASP243 PRO244 LEU245 ASP246 TYR247 ALA248 LEU249 GLN250 ALA251 ALA252 LEU253 ALA254 GLU255 PHE256 TYR257 PRO258 GLY259 PRO260 MET261 ALA262 THR263 GLY264 GLU265 ASN266 LEU267 PHE268 SER269 HIS270 GLN271 ASP272 ALA273 ARG274 ASN275 LEU276 LEU277 ARG278 TYR279 GLY280 GLY281 MET282 ARG283 PRO284 ASP285 ARG286 ASP287 TRP288 LEU289 GLN290 PHE291 ASP292 CYS293 ALA294 LEU295 SER296 TYR297 GLY298 LEU299 CYS300 GLU301 TYR302 GLN303 ARG304 THR305 LEU306 GLU307 VAL308 LEU309 LYS310 THR311 HIS312 GLY313 TRP314 SER315 PRO316 SER317 ARG318 CYS319 ILE320 PRO321 HIS322 GLY323 GLY324 HIS325 GLN326 MET327 SER328 LEU329 ASN330 ILE331 ALA332 ALA333 GLY334 LEU335 GLY336 LEU337 GLY338 GLY339 ASN340 GLU341 SER342 TYR343 PRO344 ASP345 LEU346 PHE347 GLN348 PRO349 TYR350 GLY351 GLY352 PHE353 PRO354 ASP355 GLY356 VAL357 ARG358 VAL359 GLU360 ASN361 GLY362 HIS363 ILE364 THR365 MET366 PRO367 ASP368 LEU369 PRO370 GLY371 ILE372 GLY373 PHE374 GLU375 GLY376 LYS377 SER378 ASP379 LEU380 TYR381 LYS382 GLU383 MET384 LYS385 ALA386 LEU387 ALA388 GLU389
Ligands
Unit 5 TAR1001 MG2001
Unit 6 TAR1002 MG2002
Unit 7 TAR1003 MG2003
Unit 8 TLA1004 MG2004
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany