2DU6 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE E418N/E420N MUTANT COMPLEXED WITH TRNAAMBER AND O-PHOSPHOSERINE ("AMBER COMPLEX")
• Keywords: ALPHA4 TETRAMER, LIGASE/RNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2DU6	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	RNA		D	71	1517	0
2	Protein	O-PHOSPHOSERYL-TRNA SYNTHETASE	A	534	4319	0
3	Protein	O-PHOSPHOSERYL-TRNA SYNTHETASE	B	465	3761	0
4	Ligand	O-PHOSPHOSERYL-TRNA SYNTHETASE	A	2	0	22
total				1072	9597	22

Proteins

Unit 2

MET 1 LYS 2 PHE 3 ASP 4 PRO 5 GLN 6 LYS 7 TYR 8 ARG 9 GLU 10 LEU 11 ALA 12 GLU 13 LYS 14 ASP 15 PHE 16 GLU 17 ALA 18 ALA 19 TRP 20 LYS 21 ALA 22 GLY 23 LYS 24 GLU 25 ILE 26 LEU 27 ALA 28 GLU 29 ARG 30 SER 31 PRO 32 ASN 33 GLU 34 LEU 35 TYR 36 PRO 37 ARG 38 VAL 39 GLY 40 PHE 41 SER 42 PHE 43 GLY 44 LYS 45 GLU 46 HIS 47 PRO 48 LEU 49 PHE 50 ALA 51 THR 52 ILE 53 GLN 54 ARG 55 LEU 56 ARG 57 GLU 58 ALA 59 TYR 60 LEU 61 SER 62 ILE 63 GLY 64 PHE 65 SER 66 GLU 67 VAL 68 VAL 69 ASN 70 PRO 71 LEU 72 ILE 73 VAL 74 GLU 75 ASP 76 VAL 77 HIS 78 VAL 79 LYS 80 LYS 81 GLN 82 PHE 83 GLY 84 ARG 85 GLU 86 ALA 87 LEU 88 ALA 89 VAL 90 LEU 91 ASP 92 ARG 93 CYS 94 PHE 95 TYR 96 LEU 97 ALA 98 THR 99 LEU 100 PRO 101 LYS 102 PRO 103 ASN 104 VAL 105 GLY 106 ILE 107 SER 108 ALA 109 GLU 110 LYS 111 ILE 112 ARG 113 GLN 114 ILE 115 GLU 116 ALA 117 ILE 118 THR 119 LYS 120 ARG 121 GLU 122 VAL 123 ASP 124 SER 125 LYS 126 PRO 127 LEU 128 GLN 129 GLU 130 ILE 131 PHE 132 HIS 133 ARG 134 TYR 135 LYS 136 LYS 137 GLY 138 GLU 139 ILE 140 ASP 141 GLY 142 ASP 143 ASP 144 LEU 145 SER 146 TYR 147 LEU 148 ILE 149 ALA 150 GLU 151 VAL 152 LEU 153 ASP 154 VAL 155 ASP 156 ASP 157 ILE 158 THR 159 ALA 160 VAL 161 LYS 162 ILE 163 LEU 164 ASP 165 GLU 166 VAL 167 PHE 168 PRO 169 GLU 170 PHE 171 LYS 172 GLU 173 LEU 174 LYS 175 PRO 176 ILE 177 SER 178 SER 179 THR 180 LEU 181 THR 182 LEU 183 ARG 184 SER 185 HIS 186 MET 187 THR 188 THR 189 GLY 190 TRP 191 PHE 192 ILE 193 THR 194 LEU 195 SER 196 HIS 197 ILE 198 ALA 199 ASP 200 LYS 201 LEU 202 PRO 203 LEU 204 PRO 205 ILE 206 LYS 207 LEU 208 PHE 209 SER 210 ILE 211 ASP 212 ARG 213 CYS 214 PHE 215 ARG 216 ARG 217 GLU 218 GLN 219 GLY 220 GLU 221 ASP 222 ALA 223 THR 224 ARG 225 LEU 226 TYR 227 THR 228 TYR 229 PHE 230 SER 231 ALA 232 SER 233 CYS 234 VAL 235 LEU 236 VAL 237 ASP 238 GLU 239 GLU 240 LEU 241 SER 242 VAL 243 ASP 244 ASP 245 GLY 246 LYS 247 ALA 248 VAL 249 ALA 250 GLU 251 ALA 252 LEU 253 LEU 254 ARG 255 GLN 256 PHE 257 GLY 258 PHE 259 GLU 260 ASN 261 PHE 262 ARG 263 PHE 264 ARG 265 LYS 266 ASP 267 GLU 268 LYS 269 ARG 270 SER 271 LYS 272 TYR 273 TYR 274 ILE 275 PRO 276 ASP 277 THR 278 GLN 279 THR 280 GLU 281 VAL 282 PHE 283 ALA 284 PHE 285 HIS 286 PRO 287 LYS 288 LEU 289 VAL 290 GLY 291 SER 292 SER 293 THR 294 LYS 295 TYR 296 SER 297 ASP 298 GLY 299 TRP 300 ILE 301 GLU 302 ILE 303 ALA 304 THR 305 PHE 306 GLY 307 ILE 308 TYR 309 SER 310 PRO 311 THR 312 ALA 313 LEU 314 ALA 315 GLU 316 TYR 317 ASP 318 ILE 319 PRO 320 TYR 321 PRO 322 VAL 323 MET 324 ASN 325 LEU 326 GLY 327 LEU 328 GLY 329 VAL 330 GLU 331 ARG 332 LEU 333 ALA 334 MET 335 ILE 336 LEU 337 TYR 338 GLY 339 TYR 340 ASP 341 ASP 342 VAL 343 ARG 344 LYS 345 MET 346 VAL 347 TYR 348 PRO 349 GLN 350 ILE 351 HIS 352 GLY 353 GLU 354 ILE 355 LYS 356 LEU 357 SER 358 ASP 359 LEU 360 ASP 361 ILE 362 ALA 363 ARG 364 GLU 365 ILE 366 LYS 367 VAL 368 LYS 369 GLU 370 VAL 371 PRO 372 GLN 373 THR 374 ALA 375 VAL 376 GLY 377 LEU 378 LYS 379 ILE 380 ALA 381 GLN 382 SER 383 ILE 384 VAL 385 GLU 386 THR 387 ALA 388 GLU 389 LYS 390 HIS 391 ALA 392 SER 393 GLU 394 PRO 395 SER 396 PRO 397 CYS 398 SER 399 PHE 400 LEU 401 ALA 402 PHE 403 GLU 404 GLY 405 GLU 406 MET 407 MET 408 GLY 409 ARG 410 ASN 411 VAL 412 ARG 413 VAL 414 TYR 415 VAL 416 VAL 417 ASN 418 GLU 419 ASN 420 GLU 421 ASN 422 THR 423 LYS 424 LEU 425 CYS 426 GLY 427 PRO 428 ALA 429 TYR 430 ALA 431 ASN 432 GLU 433 VAL 434 VAL 435 VAL 436 TYR 437 LYS 438 GLY 439 ASP 440 ILE 441 TYR 442 GLY 443 ILE 444 PRO 445 LYS 446 THR 447 LYS 448 LYS 449 TRP 450 ARG 451 SER 452 PHE 453 PHE 454 GLU 455 GLU 456 GLY 457 VAL 458 PRO 459 THR 460 GLY 461 ILE 462 ARG 463 TYR 464 ILE 465 ASP 466 GLY 467 PHE 468 ALA 469 TYR 470 TYR 471 ALA 472 ALA 473 ARG 474 LYS 475 VAL 476 GLU 477 GLU 478 ALA 479 ALA 480 MET 481 ARG 482 GLU 483 GLN 484 GLU 485 GLU 486 VAL 487 LYS 488 VAL 489 LYS 490 ALA 491 ARG 492 ILE 493 VAL 494 GLU 495 ASN 496 LEU 497 SER 498 ASP 499 ILE 500 ASN 501 LEU 502 TYR 503 ILE 504 HIS 505 GLU 506 ASN 507 VAL 508 ARG 509 ARG 510 TYR 511 ILE 512 LEU 513 TRP 514 LYS 515 LYS 516 GLY 517 LYS 518 ILE 519 ASP 520 VAL 521 ARG 522 GLY 523 PRO 524 LEU 525 PHE 526 VAL 527 THR 528 VAL 529 LYS 530 ALA 531 GLU 532 ILE 533 GLU 534

Unit 3

MET 1 LYS 2 PHE 3 ASP 4 PRO 5 GLN 6 LYS 7 TYR 8 ARG 9 GLU 10 LEU 11 ALA 12 GLU 13 LYS 14 ASP 15 PHE 16 GLU 17 ALA 18 ALA 19 TRP 20 LYS 21 ALA 22 GLY 23 LYS 24 GLU 25 ILE 26 LEU 27 ALA 28 GLU 29 ARG 30 SER 31 PRO 32 ASN 33 GLU 34 LEU 35 TYR 36 PRO 37 ARG 38 VAL 39 GLY 40 PHE 41 SER 42 PHE 43 GLY 44 LYS 45 GLU 46 HIS 47 PRO 48 LEU 49 PHE 50 ALA 51 THR 52 ILE 53 GLN 54 ARG 55 LEU 56 ARG 57 GLU 58 ALA 59 TYR 60 LEU 61 SER 62 ILE 63 GLY 64 PHE 65 SER 66 GLU 67 VAL 68 VAL 69 ASN 70 PRO 71 LEU 72 ILE 73 VAL 74 GLU 75 ASP 76 VAL 77 HIS 78 VAL 79 LYS 80 LYS 81 GLN 82 PHE 83 GLY 84 ARG 85 GLU 86 ALA 87 LEU 88 ALA 89 VAL 90 LEU 91 ASP 92 ARG 93 CYS 94 PHE 95 TYR 96 LEU 97 ALA 98 THR 99 LEU 100 PRO 101 LYS 102 PRO 103 ASN 104 LEU 174 LYS 175 PRO 176 ILE 177 SER 178 SER 179 THR 180 LEU 181 THR 182 LEU 183 ARG 184 SER 185 HIS 186 MET 187 THR 188 THR 189 GLY 190 TRP 191 PHE 192 ILE 193 THR 194 LEU 195 SER 196 HIS 197 ILE 198 ALA 199 ASP 200 LYS 201 LEU 202 PRO 203 LEU 204 PRO 205 ILE 206 LYS 207 LEU 208 PHE 209 SER 210 ILE 211 ASP 212 ARG 213 CYS 214 PHE 215 ARG 216 ARG 217 GLU 218 GLN 219 GLY 220 GLU 221 ASP 222 ALA 223 THR 224 ARG 225 LEU 226 TYR 227 THR 228 TYR 229 PHE 230 SER 231 ALA 232 SER 233 CYS 234 VAL 235 LEU 236 VAL 237 ASP 238 GLU 239 GLU 240 LEU 241 SER 242 VAL 243 ASP 244 ASP 245 GLY 246 LYS 247 ALA 248 VAL 249 ALA 250 GLU 251 ALA 252 LEU 253 LEU 254 ARG 255 GLN 256 PHE 257 GLY 258 PHE 259 GLU 260 ASN 261 PHE 262 ARG 263 PHE 264 ARG 265 LYS 266 ASP 267 GLU 268 LYS 269 ARG 270 SER 271 LYS 272 TYR 273 TYR 274 ILE 275 PRO 276 ASP 277 THR 278 GLN 279 THR 280 GLU 281 VAL 282 PHE 283 ALA 284 PHE 285 HIS 286 PRO 287 LYS 288 LEU 289 VAL 290 GLY 291 SER 292 SER 293 THR 294 LYS 295 TYR 296 SER 297 ASP 298 GLY 299 TRP 300 ILE 301 GLU 302 ILE 303 ALA 304 THR 305 PHE 306 GLY 307 ILE 308 TYR 309 SER 310 PRO 311 THR 312 ALA 313 LEU 314 ALA 315 GLU 316 TYR 317 ASP 318 ILE 319 PRO 320 TYR 321 PRO 322 VAL 323 MET 324 ASN 325 LEU 326 GLY 327 LEU 328 GLY 329 VAL 330 GLU 331 ARG 332 LEU 333 ALA 334 MET 335 ILE 336 LEU 337 TYR 338 GLY 339 TYR 340 ASP 341 ASP 342 VAL 343 ARG 344 LYS 345 MET 346 VAL 347 TYR 348 PRO 349 GLN 350 ILE 351 HIS 352 GLY 353 GLU 354 ILE 355 LYS 356 LEU 357 SER 358 ASP 359 LEU 360 ASP 361 ILE 362 ALA 363 ARG 364 GLU 365 ILE 366 LYS 367 VAL 368 LYS 369 GLU 370 VAL 371 PRO 372 GLN 373 THR 374 ALA 375 VAL 376 GLY 377 LEU 378 LYS 379 ILE 380 ALA 381 GLN 382 SER 383 ILE 384 VAL 385 GLU 386 THR 387 ALA 388 GLU 389 LYS 390 HIS 391 ALA 392 SER 393 GLU 394 PRO 395 SER 396 PRO 397 CYS 398 SER 399 PHE 400 LEU 401 ALA 402 PHE 403 GLU 404 GLY 405 GLU 406 MET 407 MET 408 GLY 409 ARG 410 ASN 411 VAL 412 ARG 413 VAL 414 TYR 415 VAL 416 VAL 417 ASN 418 GLU 419 ASN 420 GLU 421 ASN 422 THR 423 LYS 424 LEU 425 CYS 426 GLY 427 PRO 428 ALA 429 TYR 430 ALA 431 ASN 432 GLU 433 VAL 434 VAL 435 VAL 436 TYR 437 LYS 438 GLY 439 ASP 440 ILE 441 TYR 442 GLY 443 ILE 444 PRO 445 LYS 446 THR 447 LYS 448 LYS 449 TRP 450 ARG 451 SER 452 PHE 453 PHE 454 GLU 455 GLU 456 GLY 457 VAL 458 PRO 459 THR 460 GLY 461 ILE 462 ARG 463 TYR 464 ILE 465 ASP 466 GLY 467 PHE 468 ALA 469 TYR 470 TYR 471 ALA 472 ALA 473 ARG 474 LYS 475 VAL 476 GLU 477 GLU 478 ALA 479 ALA 480 MET 481 ARG 482 GLU 483 GLN 484 GLU 485 GLU 486 VAL 487 LYS 488 VAL 489 LYS 490 ALA 491 ARG 492 ILE 493 VAL 494 GLU 495 ASN 496 LEU 497 SER 498 ASP 499 ILE 500 ASN 501 LEU 502 TYR 503 ILE 504 HIS 505 GLU 506 ASN 507 VAL 508 ARG 509 ARG 510 TYR 511 ILE 512 LEU 513 TRP 514 LYS 515 LYS 516 GLY 517 LYS 518 ILE 519 ASP 520 VAL 521 ARG 522 GLY 523 PRO 524 LEU 525 PHE 526 VAL 527 THR 528 VAL 529 LYS 530 ALA 531 GLU 532 ILE 533 GLU 534

Nucleic acids

Unit 1

G 901 C 902 C 903 A 904 G 905 G 906 G 907 U 908 G 909 G 910 C 911 A 912 G 913 A 914 G 915 G 916 G 917 G 918 C 919 U 920 U 921 U 922 G 923 C 924 G 925 G 926 C 927 G 928 G 929 A 930 C 931 U 932 C 933 U 934 A 935 G 936 A 937 U 938 C 939 C 940 G 941 C 942 U 943 U 944 U 945 A 946 C 947 C 948 C 949 C 950 G 951 G 952 U 953 U 954 C 955 G 956 A 957 A 958 U 959 C 960 C 961 G 962 G 963 G 964 C 965 C 966 C 967 U 968 G 969 G 970 C 971

Ligands

Unit 4

SEP 1001 SEP 1002