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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE ANALYSIS OF THE L-LACTATE OXIDASE
Keywords TIM BARREL, FMN, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2DU2     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LACTATE OXIDASE  A 374 2888 0
2  Protein   LACTATE OXIDASE  B 374 2888 0
3  Protein   LACTATE OXIDASE  C 374 2888 0
4  Protein   LACTATE OXIDASE  D 374 2888 0
5  Ligand   LACTATE OXIDASE  A 1 0 31
6  Ligand   LACTATE OXIDASE  B 1 0 31
7  Ligand   LACTATE OXIDASE  C 1 0 31
8  Ligand   LACTATE OXIDASE  D 1 0 31
9 Water     1109 0 1109
total       2609 11552 1233

Proteins
Unit 1 MET1 ASN2 ASN3 ASN4 ASP5 ILE6 GLU7 TYR8 ASN9 ALA10 PRO11 SER12 GLU13 ILE14 LYS15 TYR16 ILE17 ASP18 VAL19 VAL20 ASN21 THR22 TYR23 ASP24 LEU25 GLU26 GLU27 GLU28 ALA29 SER30 LYS31 VAL32 VAL33 PRO34 HIS35 GLY36 GLY37 PHE38 ASN39 TYR40 ILE41 ALA42 GLY43 ALA44 SER45 GLY46 ASP47 GLU48 TRP49 THR50 LYS51 ARG52 ALA53 ASN54 ASP55 ARG56 ALA57 TRP58 LYS59 HIS60 LYS61 LEU62 LEU63 TYR64 PRO65 ARG66 LEU67 ALA68 GLN69 ASP70 VAL71 GLU72 ALA73 PRO74 ASP75 THR76 SER77 THR78 GLU79 ILE80 LEU81 GLY82 HIS83 LYS84 ILE85 LYS86 ALA87 PRO88 PHE89 ILE90 MET91 ALA92 PRO93 ILE94 ALA95 ALA96 HIS97 GLY98 LEU99 ALA100 HIS101 THR102 THR103 LYS104 GLU105 ALA106 GLY107 THR108 ALA109 ARG110 ALA111 VAL112 SER113 GLU114 PHE115 GLY116 THR117 ILE118 MET119 SER120 ILE121 SER122 ALA123 TYR124 SER125 GLY126 ALA127 THR128 PHE129 GLU130 GLU131 ILE132 SER133 GLU134 GLY135 LEU136 ASN137 GLY138 GLY139 PRO140 ARG141 TRP142 PHE143 GLN144 ILE145 TYR146 MET147 ALA148 LYS149 ASP150 ASP151 GLN152 GLN153 ASN154 ARG155 ASP156 ILE157 LEU158 ASP159 GLU160 ALA161 LYS162 SER163 ASP164 GLY165 ALA166 THR167 ALA168 ILE169 ILE170 LEU171 THR172 ALA173 ASP174 SER175 THR176 VAL177 SER178 GLY179 ASN180 ARG181 ASP182 ARG183 ASP184 VAL185 LYS186 ASN187 LYS188 PHE189 VAL190 TYR191 PRO192 PHE193 GLY194 MET195 PRO196 ILE197 VAL198 GLN199 ARG200 TYR201 LEU202 ARG203 GLY204 THR205 ALA206 GLU207 GLY208 MET209 SER210 LEU211 ASN212 ASN213 ILE214 TYR215 GLY216 ALA217 SER218 LYS219 GLN220 LYS221 ILE222 SER223 PRO224 ARG225 ASP226 ILE227 GLU228 GLU229 ILE230 ALA231 GLY232 HIS233 SER234 GLY235 LEU236 PRO237 VAL238 PHE239 VAL240 LYS241 GLY242 ILE243 GLN244 HIS245 PRO246 GLU247 ASP248 ALA249 ASP250 MET251 ALA252 ILE253 LYS254 ARG255 GLY256 ALA257 SER258 GLY259 ILE260 TRP261 VAL262 SER263 ASN264 HIS265 GLY266 ALA267 ARG268 GLN269 LEU270 TYR271 GLU272 ALA273 PRO274 GLY275 SER276 PHE277 ASP278 THR279 LEU280 PRO281 ALA282 ILE283 ALA284 GLU285 ARG286 VAL287 ASN288 LYS289 ARG290 VAL291 PRO292 ILE293 VAL294 PHE295 ASP296 SER297 GLY298 VAL299 ARG300 ARG301 GLY302 GLU303 HIS304 VAL305 ALA306 LYS307 ALA308 LEU309 ALA310 SER311 GLY312 ALA313 ASP314 VAL315 VAL316 ALA317 LEU318 GLY319 ARG320 PRO321 VAL322 LEU323 PHE324 GLY325 LEU326 ALA327 LEU328 GLY329 GLY330 TRP331 GLN332 GLY333 ALA334 TYR335 SER336 VAL337 LEU338 ASP339 TYR340 PHE341 GLN342 LYS343 ASP344 LEU345 THR346 ARG347 VAL348 MET349 GLN350 LEU351 THR352 GLY353 SER354 GLN355 ASN356 VAL357 GLU358 ASP359 LEU360 LYS361 GLY362 LEU363 ASP364 LEU365 PHE366 ASP367 ASN368 PRO369 TYR370 GLY371 TYR372 GLU373 TYR374
Unit 2 MET1001 ASN1002 ASN1003 ASN1004 ASP1005 ILE1006 GLU1007 TYR1008 ASN1009 ALA1010 PRO1011 SER1012 GLU1013 ILE1014 LYS1015 TYR1016 ILE1017 ASP1018 VAL1019 VAL1020 ASN1021 THR1022 TYR1023 ASP1024 LEU1025 GLU1026 GLU1027 GLU1028 ALA1029 SER1030 LYS1031 VAL1032 VAL1033 PRO1034 HIS1035 GLY1036 GLY1037 PHE1038 ASN1039 TYR1040 ILE1041 ALA1042 GLY1043 ALA1044 SER1045 GLY1046 ASP1047 GLU1048 TRP1049 THR1050 LYS1051 ARG1052 ALA1053 ASN1054 ASP1055 ARG1056 ALA1057 TRP1058 LYS1059 HIS1060 LYS1061 LEU1062 LEU1063 TYR1064 PRO1065 ARG1066 LEU1067 ALA1068 GLN1069 ASP1070 VAL1071 GLU1072 ALA1073 PRO1074 ASP1075 THR1076 SER1077 THR1078 GLU1079 ILE1080 LEU1081 GLY1082 HIS1083 LYS1084 ILE1085 LYS1086 ALA1087 PRO1088 PHE1089 ILE1090 MET1091 ALA1092 PRO1093 ILE1094 ALA1095 ALA1096 HIS1097 GLY1098 LEU1099 ALA1100 HIS1101 THR1102 THR1103 LYS1104 GLU1105 ALA1106 GLY1107 THR1108 ALA1109 ARG1110 ALA1111 VAL1112 SER1113 GLU1114 PHE1115 GLY1116 THR1117 ILE1118 MET1119 SER1120 ILE1121 SER1122 ALA1123 TYR1124 SER1125 GLY1126 ALA1127 THR1128 PHE1129 GLU1130 GLU1131 ILE1132 SER1133 GLU1134 GLY1135 LEU1136 ASN1137 GLY1138 GLY1139 PRO1140 ARG1141 TRP1142 PHE1143 GLN1144 ILE1145 TYR1146 MET1147 ALA1148 LYS1149 ASP1150 ASP1151 GLN1152 GLN1153 ASN1154 ARG1155 ASP1156 ILE1157 LEU1158 ASP1159 GLU1160 ALA1161 LYS1162 SER1163 ASP1164 GLY1165 ALA1166 THR1167 ALA1168 ILE1169 ILE1170 LEU1171 THR1172 ALA1173 ASP1174 SER1175 THR1176 VAL1177 SER1178 GLY1179 ASN1180 ARG1181 ASP1182 ARG1183 ASP1184 VAL1185 LYS1186 ASN1187 LYS1188 PHE1189 VAL1190 TYR1191 PRO1192 PHE1193 GLY1194 MET1195 PRO1196 ILE1197 VAL1198 GLN1199 ARG1200 TYR1201 LEU1202 ARG1203 GLY1204 THR1205 ALA1206 GLU1207 GLY1208 MET1209 SER1210 LEU1211 ASN1212 ASN1213 ILE1214 TYR1215 GLY1216 ALA1217 SER1218 LYS1219 GLN1220 LYS1221 ILE1222 SER1223 PRO1224 ARG1225 ASP1226 ILE1227 GLU1228 GLU1229 ILE1230 ALA1231 GLY1232 HIS1233 SER1234 GLY1235 LEU1236 PRO1237 VAL1238 PHE1239 VAL1240 LYS1241 GLY1242 ILE1243 GLN1244 HIS1245 PRO1246 GLU1247 ASP1248 ALA1249 ASP1250 MET1251 ALA1252 ILE1253 LYS1254 ARG1255 GLY1256 ALA1257 SER1258 GLY1259 ILE1260 TRP1261 VAL1262 SER1263 ASN1264 HIS1265 GLY1266 ALA1267 ARG1268 GLN1269 LEU1270 TYR1271 GLU1272 ALA1273 PRO1274 GLY1275 SER1276 PHE1277 ASP1278 THR1279 LEU1280 PRO1281 ALA1282 ILE1283 ALA1284 GLU1285 ARG1286 VAL1287 ASN1288 LYS1289 ARG1290 VAL1291 PRO1292 ILE1293 VAL1294 PHE1295 ASP1296 SER1297 GLY1298 VAL1299 ARG1300 ARG1301 GLY1302 GLU1303 HIS1304 VAL1305 ALA1306 LYS1307 ALA1308 LEU1309 ALA1310 SER1311 GLY1312 ALA1313 ASP1314 VAL1315 VAL1316 ALA1317 LEU1318 GLY1319 ARG1320 PRO1321 VAL1322 LEU1323 PHE1324 GLY1325 LEU1326 ALA1327 LEU1328 GLY1329 GLY1330 TRP1331 GLN1332 GLY1333 ALA1334 TYR1335 SER1336 VAL1337 LEU1338 ASP1339 TYR1340 PHE1341 GLN1342 LYS1343 ASP1344 LEU1345 THR1346 ARG1347 VAL1348 MET1349 GLN1350 LEU1351 THR1352 GLY1353 SER1354 GLN1355 ASN1356 VAL1357 GLU1358 ASP1359 LEU1360 LYS1361 GLY1362 LEU1363 ASP1364 LEU1365 PHE1366 ASP1367 ASN1368 PRO1369 TYR1370 GLY1371 TYR1372 GLU1373 TYR1374
Unit 3 MET2001 ASN2002 ASN2003 ASN2004 ASP2005 ILE2006 GLU2007 TYR2008 ASN2009 ALA2010 PRO2011 SER2012 GLU2013 ILE2014 LYS2015 TYR2016 ILE2017 ASP2018 VAL2019 VAL2020 ASN2021 THR2022 TYR2023 ASP2024 LEU2025 GLU2026 GLU2027 GLU2028 ALA2029 SER2030 LYS2031 VAL2032 VAL2033 PRO2034 HIS2035 GLY2036 GLY2037 PHE2038 ASN2039 TYR2040 ILE2041 ALA2042 GLY2043 ALA2044 SER2045 GLY2046 ASP2047 GLU2048 TRP2049 THR2050 LYS2051 ARG2052 ALA2053 ASN2054 ASP2055 ARG2056 ALA2057 TRP2058 LYS2059 HIS2060 LYS2061 LEU2062 LEU2063 TYR2064 PRO2065 ARG2066 LEU2067 ALA2068 GLN2069 ASP2070 VAL2071 GLU2072 ALA2073 PRO2074 ASP2075 THR2076 SER2077 THR2078 GLU2079 ILE2080 LEU2081 GLY2082 HIS2083 LYS2084 ILE2085 LYS2086 ALA2087 PRO2088 PHE2089 ILE2090 MET2091 ALA2092 PRO2093 ILE2094 ALA2095 ALA2096 HIS2097 GLY2098 LEU2099 ALA2100 HIS2101 THR2102 THR2103 LYS2104 GLU2105 ALA2106 GLY2107 THR2108 ALA2109 ARG2110 ALA2111 VAL2112 SER2113 GLU2114 PHE2115 GLY2116 THR2117 ILE2118 MET2119 SER2120 ILE2121 SER2122 ALA2123 TYR2124 SER2125 GLY2126 ALA2127 THR2128 PHE2129 GLU2130 GLU2131 ILE2132 SER2133 GLU2134 GLY2135 LEU2136 ASN2137 GLY2138 GLY2139 PRO2140 ARG2141 TRP2142 PHE2143 GLN2144 ILE2145 TYR2146 MET2147 ALA2148 LYS2149 ASP2150 ASP2151 GLN2152 GLN2153 ASN2154 ARG2155 ASP2156 ILE2157 LEU2158 ASP2159 GLU2160 ALA2161 LYS2162 SER2163 ASP2164 GLY2165 ALA2166 THR2167 ALA2168 ILE2169 ILE2170 LEU2171 THR2172 ALA2173 ASP2174 SER2175 THR2176 VAL2177 SER2178 GLY2179 ASN2180 ARG2181 ASP2182 ARG2183 ASP2184 VAL2185 LYS2186 ASN2187 LYS2188 PHE2189 VAL2190 TYR2191 PRO2192 PHE2193 GLY2194 MET2195 PRO2196 ILE2197 VAL2198 GLN2199 ARG2200 TYR2201 LEU2202 ARG2203 GLY2204 THR2205 ALA2206 GLU2207 GLY2208 MET2209 SER2210 LEU2211 ASN2212 ASN2213 ILE2214 TYR2215 GLY2216 ALA2217 SER2218 LYS2219 GLN2220 LYS2221 ILE2222 SER2223 PRO2224 ARG2225 ASP2226 ILE2227 GLU2228 GLU2229 ILE2230 ALA2231 GLY2232 HIS2233 SER2234 GLY2235 LEU2236 PRO2237 VAL2238 PHE2239 VAL2240 LYS2241 GLY2242 ILE2243 GLN2244 HIS2245 PRO2246 GLU2247 ASP2248 ALA2249 ASP2250 MET2251 ALA2252 ILE2253 LYS2254 ARG2255 GLY2256 ALA2257 SER2258 GLY2259 ILE2260 TRP2261 VAL2262 SER2263 ASN2264 HIS2265 GLY2266 ALA2267 ARG2268 GLN2269 LEU2270 TYR2271 GLU2272 ALA2273 PRO2274 GLY2275 SER2276 PHE2277 ASP2278 THR2279 LEU2280 PRO2281 ALA2282 ILE2283 ALA2284 GLU2285 ARG2286 VAL2287 ASN2288 LYS2289 ARG2290 VAL2291 PRO2292 ILE2293 VAL2294 PHE2295 ASP2296 SER2297 GLY2298 VAL2299 ARG2300 ARG2301 GLY2302 GLU2303 HIS2304 VAL2305 ALA2306 LYS2307 ALA2308 LEU2309 ALA2310 SER2311 GLY2312 ALA2313 ASP2314 VAL2315 VAL2316 ALA2317 LEU2318 GLY2319 ARG2320 PRO2321 VAL2322 LEU2323 PHE2324 GLY2325 LEU2326 ALA2327 LEU2328 GLY2329 GLY2330 TRP2331 GLN2332 GLY2333 ALA2334 TYR2335 SER2336 VAL2337 LEU2338 ASP2339 TYR2340 PHE2341 GLN2342 LYS2343 ASP2344 LEU2345 THR2346 ARG2347 VAL2348 MET2349 GLN2350 LEU2351 THR2352 GLY2353 SER2354 GLN2355 ASN2356 VAL2357 GLU2358 ASP2359 LEU2360 LYS2361 GLY2362 LEU2363 ASP2364 LEU2365 PHE2366 ASP2367 ASN2368 PRO2369 TYR2370 GLY2371 TYR2372 GLU2373 TYR2374
Unit 4 MET3001 ASN3002 ASN3003 ASN3004 ASP3005 ILE3006 GLU3007 TYR3008 ASN3009 ALA3010 PRO3011 SER3012 GLU3013 ILE3014 LYS3015 TYR3016 ILE3017 ASP3018 VAL3019 VAL3020 ASN3021 THR3022 TYR3023 ASP3024 LEU3025 GLU3026 GLU3027 GLU3028 ALA3029 SER3030 LYS3031 VAL3032 VAL3033 PRO3034 HIS3035 GLY3036 GLY3037 PHE3038 ASN3039 TYR3040 ILE3041 ALA3042 GLY3043 ALA3044 SER3045 GLY3046 ASP3047 GLU3048 TRP3049 THR3050 LYS3051 ARG3052 ALA3053 ASN3054 ASP3055 ARG3056 ALA3057 TRP3058 LYS3059 HIS3060 LYS3061 LEU3062 LEU3063 TYR3064 PRO3065 ARG3066 LEU3067 ALA3068 GLN3069 ASP3070 VAL3071 GLU3072 ALA3073 PRO3074 ASP3075 THR3076 SER3077 THR3078 GLU3079 ILE3080 LEU3081 GLY3082 HIS3083 LYS3084 ILE3085 LYS3086 ALA3087 PRO3088 PHE3089 ILE3090 MET3091 ALA3092 PRO3093 ILE3094 ALA3095 ALA3096 HIS3097 GLY3098 LEU3099 ALA3100 HIS3101 THR3102 THR3103 LYS3104 GLU3105 ALA3106 GLY3107 THR3108 ALA3109 ARG3110 ALA3111 VAL3112 SER3113 GLU3114 PHE3115 GLY3116 THR3117 ILE3118 MET3119 SER3120 ILE3121 SER3122 ALA3123 TYR3124 SER3125 GLY3126 ALA3127 THR3128 PHE3129 GLU3130 GLU3131 ILE3132 SER3133 GLU3134 GLY3135 LEU3136 ASN3137 GLY3138 GLY3139 PRO3140 ARG3141 TRP3142 PHE3143 GLN3144 ILE3145 TYR3146 MET3147 ALA3148 LYS3149 ASP3150 ASP3151 GLN3152 GLN3153 ASN3154 ARG3155 ASP3156 ILE3157 LEU3158 ASP3159 GLU3160 ALA3161 LYS3162 SER3163 ASP3164 GLY3165 ALA3166 THR3167 ALA3168 ILE3169 ILE3170 LEU3171 THR3172 ALA3173 ASP3174 SER3175 THR3176 VAL3177 SER3178 GLY3179 ASN3180 ARG3181 ASP3182 ARG3183 ASP3184 VAL3185 LYS3186 ASN3187 LYS3188 PHE3189 VAL3190 TYR3191 PRO3192 PHE3193 GLY3194 MET3195 PRO3196 ILE3197 VAL3198 GLN3199 ARG3200 TYR3201 LEU3202 ARG3203 GLY3204 THR3205 ALA3206 GLU3207 GLY3208 MET3209 SER3210 LEU3211 ASN3212 ASN3213 ILE3214 TYR3215 GLY3216 ALA3217 SER3218 LYS3219 GLN3220 LYS3221 ILE3222 SER3223 PRO3224 ARG3225 ASP3226 ILE3227 GLU3228 GLU3229 ILE3230 ALA3231 GLY3232 HIS3233 SER3234 GLY3235 LEU3236 PRO3237 VAL3238 PHE3239 VAL3240 LYS3241 GLY3242 ILE3243 GLN3244 HIS3245 PRO3246 GLU3247 ASP3248 ALA3249 ASP3250 MET3251 ALA3252 ILE3253 LYS3254 ARG3255 GLY3256 ALA3257 SER3258 GLY3259 ILE3260 TRP3261 VAL3262 SER3263 ASN3264 HIS3265 GLY3266 ALA3267 ARG3268 GLN3269 LEU3270 TYR3271 GLU3272 ALA3273 PRO3274 GLY3275 SER3276 PHE3277 ASP3278 THR3279 LEU3280 PRO3281 ALA3282 ILE3283 ALA3284 GLU3285 ARG3286 VAL3287 ASN3288 LYS3289 ARG3290 VAL3291 PRO3292 ILE3293 VAL3294 PHE3295 ASP3296 SER3297 GLY3298 VAL3299 ARG3300 ARG3301 GLY3302 GLU3303 HIS3304 VAL3305 ALA3306 LYS3307 ALA3308 LEU3309 ALA3310 SER3311 GLY3312 ALA3313 ASP3314 VAL3315 VAL3316 ALA3317 LEU3318 GLY3319 ARG3320 PRO3321 VAL3322 LEU3323 PHE3324 GLY3325 LEU3326 ALA3327 LEU3328 GLY3329 GLY3330 TRP3331 GLN3332 GLY3333 ALA3334 TYR3335 SER3336 VAL3337 LEU3338 ASP3339 TYR3340 PHE3341 GLN3342 LYS3343 ASP3344 LEU3345 THR3346 ARG3347 VAL3348 MET3349 GLN3350 LEU3351 THR3352 GLY3353 SER3354 GLN3355 ASN3356 VAL3357 GLU3358 ASP3359 LEU3360 LYS3361 GLY3362 LEU3363 ASP3364 LEU3365 PHE3366 ASP3367 ASN3368 PRO3369 TYR3370 GLY3371 TYR3372 GLU3373 TYR3374

Ligands
Unit 5 FMN512
Unit 6 FMN1512
Unit 7 FMN2512
Unit 8 FMN3512

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany