2DQ0 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF SERYL-TRNA SYNTHETASE FROM PYROCOCCUS H COMPLEXED WITH A SERYL-ADENYLATE ANALOG
• Keywords: COILED-COIL, HOMODIMER, STRUCTURAL GENOMICS, NPPSFA, NATIONA ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCT GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2DQ0	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	SERYL-TRNA SYNTHETASE	A	447	3699	0
2	Protein	SERYL-TRNA SYNTHETASE	B	447	3699	0
3	Ligand	SERYL-TRNA SYNTHETASE	A	5	0	49
4	Ligand	SERYL-TRNA SYNTHETASE	B	4	0	44
5	Water			159	0	159
total				1062	7398	252

Proteins

Unit 1

MET 1 LEU 2 ASP 3 ILE 4 LYS 5 LEU 6 ILE 7 ARG 8 GLU 9 ASN 10 PRO 11 GLU 12 LEU 13 VAL 14 LYS 15 ASN 16 ASP 17 LEU 18 ILE 19 LYS 20 ARG 21 GLY 22 GLU 23 LEU 24 GLU 25 LYS 26 VAL 27 LYS 28 TRP 29 VAL 30 ASP 31 GLU 32 ILE 33 LEU 34 LYS 35 LEU 36 ASP 37 THR 38 GLU 39 TRP 40 ARG 41 THR 42 LYS 43 LEU 44 LYS 45 GLU 46 ILE 47 ASN 48 ARG 49 LEU 50 ARG 51 HIS 52 GLU 53 ARG 54 ASN 55 LYS 56 ILE 57 ALA 58 VAL 59 GLU 60 ILE 61 GLY 62 LYS 63 ARG 64 ARG 65 LYS 66 LYS 67 GLY 68 GLU 69 PRO 70 VAL 71 ASP 72 GLU 73 LEU 74 LEU 75 ALA 76 LYS 77 SER 78 ARG 79 GLU 80 ILE 81 VAL 82 LYS 83 ARG 84 ILE 85 GLY 86 GLU 87 LEU 88 GLU 89 ASN 90 GLU 91 VAL 92 GLU 93 GLU 94 LEU 95 LYS 96 LYS 97 LYS 98 ILE 99 ASP 100 TYR 101 TYR 102 LEU 103 TRP 104 ARG 105 LEU 106 PRO 107 ASN 108 ILE 109 THR 110 HIS 111 PRO 112 SER 113 VAL 114 PRO 115 VAL 116 GLY 117 LYS 118 ASP 119 GLU 120 ASN 121 ASP 122 ASN 123 VAL 124 PRO 125 ILE 126 ARG 127 PHE 128 TRP 129 GLY 130 LYS 131 ALA 132 ARG 133 VAL 134 TRP 135 LYS 136 GLY 137 HIS 138 LEU 139 GLU 140 ARG 141 PHE 142 LEU 143 GLU 144 GLN 145 SER 146 GLN 147 GLY 148 LYS 149 MET 150 GLU 151 TYR 152 GLU 153 ILE 154 LEU 155 GLU 156 TRP 157 LYS 158 PRO 159 LYS 160 LEU 161 HIS 162 VAL 163 ASP 164 LEU 165 LEU 166 GLU 167 ILE 168 LEU 169 GLY 170 GLY 171 ALA 172 ASP 173 PHE 174 ALA 175 ARG 176 ALA 177 ALA 178 LYS 179 VAL 180 SER 181 GLY 182 SER 183 ARG 184 PHE 185 TYR 186 TYR 187 LEU 188 LEU 189 ASN 190 GLU 191 ILE 192 VAL 193 ILE 194 LEU 195 ASP 196 LEU 197 ALA 198 LEU 199 ILE 200 ARG 201 PHE 202 ALA 203 LEU 204 ASP 205 ARG 206 LEU 207 ILE 208 GLU 209 LYS 210 GLY 211 PHE 212 THR 213 PRO 214 VAL 215 ILE 216 PRO 217 PRO 218 TYR 219 MET 220 VAL 221 ARG 222 ARG 223 PHE 224 VAL 225 GLU 226 GLU 227 GLY 228 SER 229 THR 230 SER 231 PHE 232 GLU 233 ASP 234 PHE 235 GLU 236 ASP 237 VAL 238 ILE 239 TYR 240 LYS 241 VAL 242 GLU 243 ASP 244 GLU 245 ASP 246 LEU 247 TYR 248 LEU 249 ILE 250 PRO 251 THR 252 ALA 253 GLU 254 HIS 255 PRO 256 LEU 257 ALA 258 GLY 259 MET 260 HIS 261 ALA 262 ASN 263 GLU 264 ILE 265 LEU 266 ASP 267 GLY 268 LYS 269 ASP 270 LEU 271 PRO 272 LEU 273 LEU 274 TYR 275 VAL 276 GLY 277 VAL 278 SER 279 PRO 280 CYS 281 PHE 282 ARG 283 LYS 284 GLU 285 ALA 286 GLY 287 THR 288 ALA 289 GLY 290 LYS 291 ASP 292 THR 293 LYS 294 GLY 295 ILE 296 PHE 297 ARG 298 VAL 299 HIS 300 GLN 301 PHE 302 HIS 303 LYS 304 VAL 305 GLU 306 GLN 307 PHE 308 VAL 309 TYR 310 SER 311 ARG 312 PRO 313 GLU 314 GLU 315 SER 316 TRP 317 GLU 318 TRP 319 HIS 320 GLU 321 LYS 322 ILE 323 ILE 324 ARG 325 ASN 326 ALA 327 GLU 328 GLU 329 LEU 330 PHE 331 GLN 332 GLU 333 LEU 334 GLU 335 ILE 336 PRO 337 TYR 338 ARG 339 VAL 340 VAL 341 ASN 342 ILE 343 CYS 344 THR 345 GLY 346 ASP 347 LEU 348 GLY 349 TYR 350 VAL 351 ALA 352 ALA 353 LYS 354 LYS 355 TYR 356 ASP 357 ILE 358 GLU 359 ALA 360 TRP 361 MET 362 PRO 363 GLY 364 GLN 365 GLY 366 LYS 367 PHE 368 ARG 369 GLU 370 VAL 371 VAL 372 SER 373 ALA 374 SER 375 ASN 376 CYS 377 THR 378 ASP 379 TRP 380 GLN 381 ALA 382 ARG 383 ARG 384 LEU 385 ASN 386 ILE 387 ARG 388 PHE 389 ARG 390 ASP 391 ARG 392 THR 393 ASP 394 GLU 395 LYS 396 PRO 397 ARG 398 TYR 399 VAL 400 HIS 401 THR 402 LEU 403 ASN 404 SER 405 THR 406 ALA 407 ILE 408 ALA 409 THR 410 SER 411 ARG 412 ALA 413 ILE 414 VAL 415 ALA 416 ILE 417 LEU 418 GLU 419 ASN 420 HIS 421 GLN 422 GLU 423 GLU 424 ASP 425 GLY 426 THR 427 VAL 428 ARG 429 ILE 430 PRO 431 LYS 432 VAL 433 LEU 434 TRP 435 LYS 436 TYR 437 THR 438 GLY 439 PHE 440 LYS 441 GLU 442 ILE 443 VAL 444 PRO 445 VAL 446 GLU 447

Unit 2

MET 1 LEU 2 ASP 3 ILE 4 LYS 5 LEU 6 ILE 7 ARG 8 GLU 9 ASN 10 PRO 11 GLU 12 LEU 13 VAL 14 LYS 15 ASN 16 ASP 17 LEU 18 ILE 19 LYS 20 ARG 21 GLY 22 GLU 23 LEU 24 GLU 25 LYS 26 VAL 27 LYS 28 TRP 29 VAL 30 ASP 31 GLU 32 ILE 33 LEU 34 LYS 35 LEU 36 ASP 37 THR 38 GLU 39 TRP 40 ARG 41 THR 42 LYS 43 LEU 44 LYS 45 GLU 46 ILE 47 ASN 48 ARG 49 LEU 50 ARG 51 HIS 52 GLU 53 ARG 54 ASN 55 LYS 56 ILE 57 ALA 58 VAL 59 GLU 60 ILE 61 GLY 62 LYS 63 ARG 64 ARG 65 LYS 66 LYS 67 GLY 68 GLU 69 PRO 70 VAL 71 ASP 72 GLU 73 LEU 74 LEU 75 ALA 76 LYS 77 SER 78 ARG 79 GLU 80 ILE 81 VAL 82 LYS 83 ARG 84 ILE 85 GLY 86 GLU 87 LEU 88 GLU 89 ASN 90 GLU 91 VAL 92 GLU 93 GLU 94 LEU 95 LYS 96 LYS 97 LYS 98 ILE 99 ASP 100 TYR 101 TYR 102 LEU 103 TRP 104 ARG 105 LEU 106 PRO 107 ASN 108 ILE 109 THR 110 HIS 111 PRO 112 SER 113 VAL 114 PRO 115 VAL 116 GLY 117 LYS 118 ASP 119 GLU 120 ASN 121 ASP 122 ASN 123 VAL 124 PRO 125 ILE 126 ARG 127 PHE 128 TRP 129 GLY 130 LYS 131 ALA 132 ARG 133 VAL 134 TRP 135 LYS 136 GLY 137 HIS 138 LEU 139 GLU 140 ARG 141 PHE 142 LEU 143 GLU 144 GLN 145 SER 146 GLN 147 GLY 148 LYS 149 MET 150 GLU 151 TYR 152 GLU 153 ILE 154 LEU 155 GLU 156 TRP 157 LYS 158 PRO 159 LYS 160 LEU 161 HIS 162 VAL 163 ASP 164 LEU 165 LEU 166 GLU 167 ILE 168 LEU 169 GLY 170 GLY 171 ALA 172 ASP 173 PHE 174 ALA 175 ARG 176 ALA 177 ALA 178 LYS 179 VAL 180 SER 181 GLY 182 SER 183 ARG 184 PHE 185 TYR 186 TYR 187 LEU 188 LEU 189 ASN 190 GLU 191 ILE 192 VAL 193 ILE 194 LEU 195 ASP 196 LEU 197 ALA 198 LEU 199 ILE 200 ARG 201 PHE 202 ALA 203 LEU 204 ASP 205 ARG 206 LEU 207 ILE 208 GLU 209 LYS 210 GLY 211 PHE 212 THR 213 PRO 214 VAL 215 ILE 216 PRO 217 PRO 218 TYR 219 MET 220 VAL 221 ARG 222 ARG 223 PHE 224 VAL 225 GLU 226 GLU 227 GLY 228 SER 229 THR 230 SER 231 PHE 232 GLU 233 ASP 234 PHE 235 GLU 236 ASP 237 VAL 238 ILE 239 TYR 240 LYS 241 VAL 242 GLU 243 ASP 244 GLU 245 ASP 246 LEU 247 TYR 248 LEU 249 ILE 250 PRO 251 THR 252 ALA 253 GLU 254 HIS 255 PRO 256 LEU 257 ALA 258 GLY 259 MET 260 HIS 261 ALA 262 ASN 263 GLU 264 ILE 265 LEU 266 ASP 267 GLY 268 LYS 269 ASP 270 LEU 271 PRO 272 LEU 273 LEU 274 TYR 275 VAL 276 GLY 277 VAL 278 SER 279 PRO 280 CYS 281 PHE 282 ARG 283 LYS 284 GLU 285 ALA 286 GLY 287 THR 288 ALA 289 GLY 290 LYS 291 ASP 292 THR 293 LYS 294 GLY 295 ILE 296 PHE 297 ARG 298 VAL 299 HIS 300 GLN 301 PHE 302 HIS 303 LYS 304 VAL 305 GLU 306 GLN 307 PHE 308 VAL 309 TYR 310 SER 311 ARG 312 PRO 313 GLU 314 GLU 315 SER 316 TRP 317 GLU 318 TRP 319 HIS 320 GLU 321 LYS 322 ILE 323 ILE 324 ARG 325 ASN 326 ALA 327 GLU 328 GLU 329 LEU 330 PHE 331 GLN 332 GLU 333 LEU 334 GLU 335 ILE 336 PRO 337 TYR 338 ARG 339 VAL 340 VAL 341 ASN 342 ILE 343 CYS 344 THR 345 GLY 346 ASP 347 LEU 348 GLY 349 TYR 350 VAL 351 ALA 352 ALA 353 LYS 354 LYS 355 TYR 356 ASP 357 ILE 358 GLU 359 ALA 360 TRP 361 MET 362 PRO 363 GLY 364 GLN 365 GLY 366 LYS 367 PHE 368 ARG 369 GLU 370 VAL 371 VAL 372 SER 373 ALA 374 SER 375 ASN 376 CYS 377 THR 378 ASP 379 TRP 380 GLN 381 ALA 382 ARG 383 ARG 384 LEU 385 ASN 386 ILE 387 ARG 388 PHE 389 ARG 390 ASP 391 ARG 392 THR 393 ASP 394 GLU 395 LYS 396 PRO 397 ARG 398 TYR 399 VAL 400 HIS 401 THR 402 LEU 403 ASN 404 SER 405 THR 406 ALA 407 ILE 408 ALA 409 THR 410 SER 411 ARG 412 ALA 413 ILE 414 VAL 415 ALA 416 ILE 417 LEU 418 GLU 419 ASN 420 HIS 421 GLN 422 GLU 423 GLU 424 ASP 425 GLY 426 THR 427 VAL 428 ARG 429 ILE 430 PRO 431 LYS 432 VAL 433 LEU 434 TRP 435 LYS 436 TYR 437 THR 438 GLY 439 PHE 440 LYS 441 GLU 442 ILE 443 VAL 444 PRO 445 VAL 446 GLU 447

Ligands

Unit 3	SSA 1001 SO4 2001 SO4 2003 SO4 2005 SO4 2007
Unit 4	SSA 1002 SO4 2002 SO4 2004 SO4 2006