2DKJ - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF T.TH.HB8 SERINE HYDROXYMETHYLTRANSFERAS
• Keywords: PLP DEPENDENT ENZYME, TRANSFERASE, STRUCTURAL GENOMICS, NPPS NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALY RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2DKJ	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	SERINE HYDROXYMETHYLTRANSFERASE	A	402	3077	0
2	Protein	SERINE HYDROXYMETHYLTRANSFERASE	B	402	3064	0
3	Ligand	SERINE HYDROXYMETHYLTRANSFERASE	A	2	0	20
4	Ligand	SERINE HYDROXYMETHYLTRANSFERASE	B	2	0	20
5	Water			896	0	896
total				1704	6141	936

Proteins

Unit 1

LYS 6 ARG 7 ASP 8 GLU 9 ALA 10 LEU 11 PHE 12 GLU 13 LEU 14 ILE 15 ALA 16 LEU 17 GLU 18 GLU 19 LYS 20 ARG 21 GLN 22 ARG 23 GLU 24 GLY 25 LEU 26 GLU 27 LEU 28 ILE 29 ALA 30 SER 31 GLU 32 ASN 33 PHE 34 VAL 35 SER 36 LYS 37 GLN 38 VAL 39 ARG 40 GLU 41 ALA 42 VAL 43 GLY 44 SER 45 VAL 46 LEU 47 THR 48 ASN 49 LYS 50 TYR 51 ALA 52 GLU 53 GLY 54 TYR 55 PRO 56 GLY 57 ALA 58 ARG 59 TYR 60 TYR 61 GLY 62 GLY 63 CYS 64 GLU 65 VAL 66 ILE 67 ASP 68 ARG 69 VAL 70 GLU 71 SER 72 LEU 73 ALA 74 ILE 75 GLU 76 ARG 77 ALA 78 LYS 79 ALA 80 LEU 81 PHE 82 GLY 83 ALA 84 ALA 85 TRP 86 ALA 87 ASN 88 VAL 89 GLN 90 PRO 91 HIS 92 SER 93 GLY 94 SER 95 GLN 96 ALA 97 ASN 98 MET 99 ALA 100 VAL 101 TYR 102 MET 103 ALA 104 LEU 105 MET 106 GLU 107 PRO 108 GLY 109 ASP 110 THR 111 LEU 112 MET 113 GLY 114 MET 115 ASP 116 LEU 117 ALA 118 ALA 119 GLY 120 GLY 121 HIS 122 LEU 123 THR 124 HIS 125 GLY 126 SER 127 ARG 128 VAL 129 ASN 130 PHE 131 SER 132 GLY 133 LYS 134 LEU 135 TYR 136 LYS 137 VAL 138 VAL 139 SER 140 TYR 141 GLY 142 VAL 143 ARG 144 PRO 145 ASP 146 THR 147 GLU 148 LEU 149 ILE 150 ASP 151 LEU 152 GLU 153 GLU 154 VAL 155 ARG 156 ARG 157 LEU 158 ALA 159 LEU 160 GLU 161 HIS 162 ARG 163 PRO 164 LYS 165 VAL 166 ILE 167 VAL 168 ALA 169 GLY 170 ALA 171 SER 172 ALA 173 TYR 174 PRO 175 ARG 176 PHE 177 TRP 178 ASP 179 PHE 180 LYS 181 ALA 182 PHE 183 ARG 184 GLU 185 ILE 186 ALA 187 ASP 188 GLU 189 VAL 190 GLY 191 ALA 192 TYR 193 LEU 194 VAL 195 VAL 196 ASP 197 MET 198 ALA 199 HIS 200 PHE 201 ALA 202 GLY 203 LEU 204 VAL 205 ALA 206 ALA 207 GLY 208 LEU 209 HIS 210 PRO 211 ASN 212 PRO 213 LEU 214 PRO 215 TYR 216 ALA 217 HIS 218 VAL 219 VAL 220 THR 221 SER 222 THR 223 THR 224 HIS 225 LYS 226 THR 227 LEU 228 ARG 229 GLY 230 PRO 231 ARG 232 GLY 233 GLY 234 LEU 235 ILE 236 LEU 237 SER 238 ASN 239 ASP 240 PRO 241 GLU 242 LEU 243 GLY 244 LYS 245 ARG 246 ILE 247 ASP 248 LYS 249 LEU 250 ILE 251 PHE 252 PRO 253 GLY 254 ILE 255 GLN 256 GLY 257 GLY 258 PRO 259 LEU 260 GLU 261 HIS 262 VAL 263 ILE 264 ALA 265 GLY 266 LYS 267 ALA 268 VAL 269 ALA 270 PHE 271 PHE 272 GLU 273 ALA 274 LEU 275 GLN 276 PRO 277 GLU 278 PHE 279 LYS 280 GLU 281 TYR 282 SER 283 ARG 284 LEU 285 VAL 286 VAL 287 GLU 288 ASN 289 ALA 290 LYS 291 ARG 292 LEU 293 ALA 294 GLU 295 GLU 296 LEU 297 ALA 298 ARG 299 ARG 300 GLY 301 TYR 302 ARG 303 ILE 304 VAL 305 THR 306 GLY 307 GLY 308 THR 309 ASP 310 ASN 311 HIS 312 LEU 313 PHE 314 LEU 315 VAL 316 ASP 317 LEU 318 ARG 319 PRO 320 LYS 321 GLY 322 LEU 323 THR 324 GLY 325 LYS 326 GLU 327 ALA 328 GLU 329 GLU 330 ARG 331 LEU 332 ASP 333 ALA 334 VAL 335 GLY 336 ILE 337 THR 338 VAL 339 ASN 340 LYS 341 ASN 342 ALA 343 ILE 344 PRO 345 PHE 346 ASP 347 PRO 348 LYS 349 PRO 350 PRO 351 ARG 352 VAL 353 THR 354 SER 355 GLY 356 ILE 357 ARG 358 ILE 359 GLY 360 THR 361 PRO 362 ALA 363 ILE 364 THR 365 THR 366 ARG 367 GLY 368 PHE 369 THR 370 PRO 371 GLU 372 GLU 373 MET 374 PRO 375 LEU 376 VAL 377 ALA 378 GLU 379 LEU 380 ILE 381 ASP 382 ARG 383 ALA 384 LEU 385 LEU 386 GLU 387 GLY 388 PRO 389 SER 390 GLU 391 ALA 392 LEU 393 ARG 394 GLU 395 GLU 396 VAL 397 ARG 398 ARG 399 LEU 400 ALA 401 LEU 402 ALA 403 HIS 404 PRO 405 MET 406 PRO 407

Unit 2

LYS 6 ARG 7 ASP 8 GLU 9 ALA 10 LEU 11 PHE 12 GLU 13 LEU 14 ILE 15 ALA 16 LEU 17 GLU 18 GLU 19 LYS 20 ARG 21 GLN 22 ARG 23 GLU 24 GLY 25 LEU 26 GLU 27 LEU 28 ILE 29 ALA 30 SER 31 GLU 32 ASN 33 PHE 34 VAL 35 SER 36 LYS 37 GLN 38 VAL 39 ARG 40 GLU 41 ALA 42 VAL 43 GLY 44 SER 45 VAL 46 LEU 47 THR 48 ASN 49 LYS 50 TYR 51 ALA 52 GLU 53 GLY 54 TYR 55 PRO 56 GLY 57 ALA 58 ARG 59 TYR 60 TYR 61 GLY 62 GLY 63 CYS 64 GLU 65 VAL 66 ILE 67 ASP 68 ARG 69 VAL 70 GLU 71 SER 72 LEU 73 ALA 74 ILE 75 GLU 76 ARG 77 ALA 78 LYS 79 ALA 80 LEU 81 PHE 82 GLY 83 ALA 84 ALA 85 TRP 86 ALA 87 ASN 88 VAL 89 GLN 90 PRO 91 HIS 92 SER 93 GLY 94 SER 95 GLN 96 ALA 97 ASN 98 MET 99 ALA 100 VAL 101 TYR 102 MET 103 ALA 104 LEU 105 MET 106 GLU 107 PRO 108 GLY 109 ASP 110 THR 111 LEU 112 MET 113 GLY 114 MET 115 ASP 116 LEU 117 ALA 118 ALA 119 GLY 120 GLY 121 HIS 122 LEU 123 THR 124 HIS 125 GLY 126 SER 127 ARG 128 VAL 129 ASN 130 PHE 131 SER 132 GLY 133 LYS 134 LEU 135 TYR 136 LYS 137 VAL 138 VAL 139 SER 140 TYR 141 GLY 142 VAL 143 ARG 144 PRO 145 ASP 146 THR 147 GLU 148 LEU 149 ILE 150 ASP 151 LEU 152 GLU 153 GLU 154 VAL 155 ARG 156 ARG 157 LEU 158 ALA 159 LEU 160 GLU 161 HIS 162 ARG 163 PRO 164 LYS 165 VAL 166 ILE 167 VAL 168 ALA 169 GLY 170 ALA 171 SER 172 ALA 173 TYR 174 PRO 175 ARG 176 PHE 177 TRP 178 ASP 179 PHE 180 LYS 181 ALA 182 PHE 183 ARG 184 GLU 185 ILE 186 ALA 187 ASP 188 GLU 189 VAL 190 GLY 191 ALA 192 TYR 193 LEU 194 VAL 195 VAL 196 ASP 197 MET 198 ALA 199 HIS 200 PHE 201 ALA 202 GLY 203 LEU 204 VAL 205 ALA 206 ALA 207 GLY 208 LEU 209 HIS 210 PRO 211 ASN 212 PRO 213 LEU 214 PRO 215 TYR 216 ALA 217 HIS 218 VAL 219 VAL 220 THR 221 SER 222 THR 223 THR 224 HIS 225 LYS 226 THR 227 LEU 228 ARG 229 GLY 230 PRO 231 ARG 232 GLY 233 GLY 234 LEU 235 ILE 236 LEU 237 SER 238 ASN 239 ASP 240 PRO 241 GLU 242 LEU 243 GLY 244 LYS 245 ARG 246 ILE 247 ASP 248 LYS 249 LEU 250 ILE 251 PHE 252 PRO 253 GLY 254 ILE 255 GLN 256 GLY 257 GLY 258 PRO 259 LEU 260 GLU 261 HIS 262 VAL 263 ILE 264 ALA 265 GLY 266 LYS 267 ALA 268 VAL 269 ALA 270 PHE 271 PHE 272 GLU 273 ALA 274 LEU 275 GLN 276 PRO 277 GLU 278 PHE 279 LYS 280 GLU 281 TYR 282 SER 283 ARG 284 LEU 285 VAL 286 VAL 287 GLU 288 ASN 289 ALA 290 LYS 291 ARG 292 LEU 293 ALA 294 GLU 295 GLU 296 LEU 297 ALA 298 ARG 299 ARG 300 GLY 301 TYR 302 ARG 303 ILE 304 VAL 305 THR 306 GLY 307 GLY 308 THR 309 ASP 310 ASN 311 HIS 312 LEU 313 PHE 314 LEU 315 VAL 316 ASP 317 LEU 318 ARG 319 PRO 320 LYS 321 GLY 322 LEU 323 THR 324 GLY 325 LYS 326 GLU 327 ALA 328 GLU 329 GLU 330 ARG 331 LEU 332 ASP 333 ALA 334 VAL 335 GLY 336 ILE 337 THR 338 VAL 339 ASN 340 LYS 341 ASN 342 ALA 343 ILE 344 PRO 345 PHE 346 ASP 347 PRO 348 LYS 349 PRO 350 PRO 351 ARG 352 VAL 353 THR 354 SER 355 GLY 356 ILE 357 ARG 358 ILE 359 GLY 360 THR 361 PRO 362 ALA 363 ILE 364 THR 365 THR 366 ARG 367 GLY 368 PHE 369 THR 370 PRO 371 GLU 372 GLU 373 MET 374 PRO 375 LEU 376 VAL 377 ALA 378 GLU 379 LEU 380 ILE 381 ASP 382 ARG 383 ALA 384 LEU 385 LEU 386 GLU 387 GLY 388 PRO 389 SER 390 GLU 391 ALA 392 LEU 393 ARG 394 GLU 395 GLU 396 VAL 397 ARG 398 ARG 399 LEU 400 ALA 401 LEU 402 ALA 403 HIS 404 PRO 405 MET 406 PRO 407

Ligands

Unit 3	PLP 510 SO4 2520
Unit 4	PLP 510 SO4 1520