2DFD - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF HUMAN MALATE DEHYDROGENASE TYPE 2
• Keywords: DEHYDROGENASE, CITRIC ACID CYCLE, STRUCTURAL GENOMICS, STRUC GENOMICS CONSORTIUM, SGC, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2DFD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	MALATE DEHYDROGENASE	A	314	2300	0
2	Protein	MALATE DEHYDROGENASE	B	314	2276	0
3	Protein	MALATE DEHYDROGENASE	C	314	2292	0
4	Protein	MALATE DEHYDROGENASE	D	314	2292	0
5	Protein	MALATE DEHYDROGENASE	A	6	0	70
6	Protein	MALATE DEHYDROGENASE	B	4	0	64
7	Protein	MALATE DEHYDROGENASE	C	5	0	65
8	Ligand	MALATE DEHYDROGENASE	D	4	0	55
9	Water			799	0	799
total				2074	9160	1053

Proteins

Unit 1	ASN 6 ALA 7 LYS 8 VAL 9 ALA 10 VAL 11 LEU 12 GLY 13 ALA 14 SER 15 GLY 16 GLY 17 ILE 18 GLY 19 GLN 20 PRO 21 LEU 22 SER 23 LEU 24 LEU 25 LEU 26 LYS 27 ASN 28 SER 29 PRO 30 LEU 31 VAL 32 SER 33 ARG 34 LEU 35 THR 36 LEU 37 TYR 38 ASP 39 ILE 40 ALA 41 HIS 42 THR 43 PRO 44 GLY 45 VAL 46 ALA 47 ALA 48 ASP 49 LEU 50 SER 51 HIS 52 ILE 53 GLU 54 THR 55 LYS 56 ALA 57 ALA 58 VAL 59 LYS 60 GLY 61 TYR 62 LEU 63 GLY 64 PRO 65 GLU 66 GLN 67 LEU 68 PRO 69 ASP 70 CYS 71 LEU 72 LYS 73 GLY 74 CYS 75 ASP 76 VAL 77 VAL 78 VAL 79 ILE 80 PRO 81 ALA 82 GLY 83 VAL 84 PRO 85 ARG 86 LYS 87 PRO 88 GLY 89 MET 90 THR 91 ARG 92 ASP 93 ASP 94 LEU 95 PHE 96 ASN 97 THR 98 ASN 99 ALA 100 THR 101 ILE 102 VAL 103 ALA 104 THR 105 LEU 106 THR 107 ALA 108 ALA 109 CYS 110 ALA 111 GLN 112 HIS 113 CYS 114 PRO 115 GLU 116 ALA 117 MET 118 ILE 119 CYS 120 VAL 121 ILE 122 ALA 123 ASN 124 PRO 125 VAL 126 ASN 127 SER 128 THR 129 ILE 130 PRO 131 ILE 132 THR 133 ALA 134 GLU 135 VAL 136 PHE 137 LYS 138 LYS 139 HIS 140 GLY 141 VAL 142 TYR 143 ASN 144 PRO 145 ASN 146 LYS 147 ILE 148 PHE 149 GLY 150 VAL 151 THR 152 THR 153 LEU 154 ASP 155 ILE 156 VAL 157 ARG 158 ALA 159 ASN 160 THR 161 PHE 162 VAL 163 ALA 164 GLU 165 LEU 166 LYS 167 GLY 168 LEU 169 ASP 170 PRO 171 ALA 172 ARG 173 VAL 174 ASN 175 VAL 176 PRO 177 VAL 178 ILE 179 GLY 180 GLY 181 HIS 182 ALA 183 GLY 184 LYS 185 THR 186 ILE 187 ILE 188 PRO 189 LEU 190 ILE 191 SER 192 GLN 193 CYS 194 THR 195 PRO 196 LYS 197 VAL 198 ASP 199 PHE 200 PRO 201 GLN 202 ASP 203 GLN 204 LEU 205 THR 206 ALA 207 LEU 208 THR 209 GLY 210 ARG 211 ILE 212 GLN 213 GLU 214 ALA 215 GLY 216 THR 217 GLU 218 VAL 219 VAL 220 LYS 221 ALA 222 LYS 223 ALA 224 GLY 225 ALA 226 GLY 227 SER 228 ALA 229 THR 230 LEU 231 SER 232 MET 233 ALA 234 TYR 235 ALA 236 GLY 237 ALA 238 ARG 239 PHE 240 VAL 241 PHE 242 SER 243 LEU 244 VAL 245 ASP 246 ALA 247 MET 248 ASN 249 GLY 250 LYS 251 GLU 252 GLY 253 VAL 254 VAL 255 GLU 256 CYS 257 SER 258 PHE 259 VAL 260 LYS 261 SER 262 GLN 263 GLU 264 THR 265 GLU 266 CYS 267 THR 268 TYR 269 PHE 270 SER 271 THR 272 PRO 273 LEU 274 LEU 275 LEU 276 GLY 277 LYS 278 LYS 279 GLY 280 ILE 281 GLU 282 LYS 283 ASN 284 LEU 285 GLY 286 ILE 287 GLY 288 LYS 289 VAL 290 SER 291 SER 292 PHE 293 GLU 294 GLU 295 LYS 296 MET 297 ILE 298 SER 299 ASP 300 ALA 301 ILE 302 PRO 303 GLU 304 LEU 305 LYS 306 ALA 307 SER 308 ILE 309 LYS 310 LYS 311 GLY 312 GLU 313 ASP 314 PHE 315 VAL 316 LYS 317 THR 318 LEU 319
Unit 2	ASN 6 ALA 7 LYS 8 VAL 9 ALA 10 VAL 11 LEU 12 GLY 13 ALA 14 SER 15 GLY 16 GLY 17 ILE 18 GLY 19 GLN 20 PRO 21 LEU 22 SER 23 LEU 24 LEU 25 LEU 26 LYS 27 ASN 28 SER 29 PRO 30 LEU 31 VAL 32 SER 33 ARG 34 LEU 35 THR 36 LEU 37 TYR 38 ASP 39 ILE 40 ALA 41 HIS 42 THR 43 PRO 44 GLY 45 VAL 46 ALA 47 ALA 48 ASP 49 LEU 50 SER 51 HIS 52 ILE 53 GLU 54 THR 55 LYS 56 ALA 57 ALA 58 VAL 59 LYS 60 GLY 61 TYR 62 LEU 63 GLY 64 PRO 65 GLU 66 GLN 67 LEU 68 PRO 69 ASP 70 CYS 71 LEU 72 LYS 73 GLY 74 CYS 75 ASP 76 VAL 77 VAL 78 VAL 79 ILE 80 PRO 81 ALA 82 GLY 83 VAL 84 PRO 85 ARG 86 LYS 87 PRO 88 GLY 89 MET 90 THR 91 ARG 92 ASP 93 ASP 94 LEU 95 PHE 96 ASN 97 THR 98 ASN 99 ALA 100 THR 101 ILE 102 VAL 103 ALA 104 THR 105 LEU 106 THR 107 ALA 108 ALA 109 CYS 110 ALA 111 GLN 112 HIS 113 CYS 114 PRO 115 GLU 116 ALA 117 MET 118 ILE 119 CYS 120 VAL 121 ILE 122 ALA 123 ASN 124 PRO 125 VAL 126 ASN 127 SER 128 THR 129 ILE 130 PRO 131 ILE 132 THR 133 ALA 134 GLU 135 VAL 136 PHE 137 LYS 138 LYS 139 HIS 140 GLY 141 VAL 142 TYR 143 ASN 144 PRO 145 ASN 146 LYS 147 ILE 148 PHE 149 GLY 150 VAL 151 THR 152 THR 153 LEU 154 ASP 155 ILE 156 VAL 157 ARG 158 ALA 159 ASN 160 THR 161 PHE 162 VAL 163 ALA 164 GLU 165 LEU 166 LYS 167 GLY 168 LEU 169 ASP 170 PRO 171 ALA 172 ARG 173 VAL 174 ASN 175 VAL 176 PRO 177 VAL 178 ILE 179 GLY 180 GLY 181 HIS 182 ALA 183 GLY 184 LYS 185 THR 186 ILE 187 ILE 188 PRO 189 LEU 190 ILE 191 SER 192 GLN 193 CYS 194 THR 195 PRO 196 LYS 197 VAL 198 ASP 199 PHE 200 PRO 201 GLN 202 ASP 203 GLN 204 LEU 205 THR 206 ALA 207 LEU 208 THR 209 GLY 210 ARG 211 ILE 212 GLN 213 GLU 214 ALA 215 GLY 216 THR 217 GLU 218 VAL 219 VAL 220 LYS 221 ALA 222 LYS 223 ALA 224 GLY 225 ALA 226 GLY 227 SER 228 ALA 229 THR 230 LEU 231 SER 232 MET 233 ALA 234 TYR 235 ALA 236 GLY 237 ALA 238 ARG 239 PHE 240 VAL 241 PHE 242 SER 243 LEU 244 VAL 245 ASP 246 ALA 247 MET 248 ASN 249 GLY 250 LYS 251 GLU 252 GLY 253 VAL 254 VAL 255 GLU 256 CYS 257 SER 258 PHE 259 VAL 260 LYS 261 SER 262 GLN 263 GLU 264 THR 265 GLU 266 CYS 267 THR 268 TYR 269 PHE 270 SER 271 THR 272 PRO 273 LEU 274 LEU 275 LEU 276 GLY 277 LYS 278 LYS 279 GLY 280 ILE 281 GLU 282 LYS 283 ASN 284 LEU 285 GLY 286 ILE 287 GLY 288 LYS 289 VAL 290 SER 291 SER 292 PHE 293 GLU 294 GLU 295 LYS 296 MET 297 ILE 298 SER 299 ASP 300 ALA 301 ILE 302 PRO 303 GLU 304 LEU 305 LYS 306 ALA 307 SER 308 ILE 309 LYS 310 LYS 311 GLY 312 GLU 313 ASP 314 PHE 315 VAL 316 LYS 317 THR 318 LEU 319
Unit 3	ASN 6 ALA 7 LYS 8 VAL 9 ALA 10 VAL 11 LEU 12 GLY 13 ALA 14 SER 15 GLY 16 GLY 17 ILE 18 GLY 19 GLN 20 PRO 21 LEU 22 SER 23 LEU 24 LEU 25 LEU 26 LYS 27 ASN 28 SER 29 PRO 30 LEU 31 VAL 32 SER 33 ARG 34 LEU 35 THR 36 LEU 37 TYR 38 ASP 39 ILE 40 ALA 41 HIS 42 THR 43 PRO 44 GLY 45 VAL 46 ALA 47 ALA 48 ASP 49 LEU 50 SER 51 HIS 52 ILE 53 GLU 54 THR 55 LYS 56 ALA 57 ALA 58 VAL 59 LYS 60 GLY 61 TYR 62 LEU 63 GLY 64 PRO 65 GLU 66 GLN 67 LEU 68 PRO 69 ASP 70 CYS 71 LEU 72 LYS 73 GLY 74 CYS 75 ASP 76 VAL 77 VAL 78 VAL 79 ILE 80 PRO 81 ALA 82 GLY 83 VAL 84 PRO 85 ARG 86 LYS 87 PRO 88 GLY 89 MET 90 THR 91 ARG 92 ASP 93 ASP 94 LEU 95 PHE 96 ASN 97 THR 98 ASN 99 ALA 100 THR 101 ILE 102 VAL 103 ALA 104 THR 105 LEU 106 THR 107 ALA 108 ALA 109 CYS 110 ALA 111 GLN 112 HIS 113 CYS 114 PRO 115 GLU 116 ALA 117 MET 118 ILE 119 CYS 120 VAL 121 ILE 122 ALA 123 ASN 124 PRO 125 VAL 126 ASN 127 SER 128 THR 129 ILE 130 PRO 131 ILE 132 THR 133 ALA 134 GLU 135 VAL 136 PHE 137 LYS 138 LYS 139 HIS 140 GLY 141 VAL 142 TYR 143 ASN 144 PRO 145 ASN 146 LYS 147 ILE 148 PHE 149 GLY 150 VAL 151 THR 152 THR 153 LEU 154 ASP 155 ILE 156 VAL 157 ARG 158 ALA 159 ASN 160 THR 161 PHE 162 VAL 163 ALA 164 GLU 165 LEU 166 LYS 167 GLY 168 LEU 169 ASP 170 PRO 171 ALA 172 ARG 173 VAL 174 ASN 175 VAL 176 PRO 177 VAL 178 ILE 179 GLY 180 GLY 181 HIS 182 ALA 183 GLY 184 LYS 185 THR 186 ILE 187 ILE 188 PRO 189 LEU 190 ILE 191 SER 192 GLN 193 CYS 194 THR 195 PRO 196 LYS 197 VAL 198 ASP 199 PHE 200 PRO 201 GLN 202 ASP 203 GLN 204 LEU 205 THR 206 ALA 207 LEU 208 THR 209 GLY 210 ARG 211 ILE 212 GLN 213 GLU 214 ALA 215 GLY 216 THR 217 GLU 218 VAL 219 VAL 220 LYS 221 ALA 222 LYS 223 ALA 224 GLY 225 ALA 226 GLY 227 SER 228 ALA 229 THR 230 LEU 231 SER 232 MET 233 ALA 234 TYR 235 ALA 236 GLY 237 ALA 238 ARG 239 PHE 240 VAL 241 PHE 242 SER 243 LEU 244 VAL 245 ASP 246 ALA 247 MET 248 ASN 249 GLY 250 LYS 251 GLU 252 GLY 253 VAL 254 VAL 255 GLU 256 CYS 257 SER 258 PHE 259 VAL 260 LYS 261 SER 262 GLN 263 GLU 264 THR 265 GLU 266 CYS 267 THR 268 TYR 269 PHE 270 SER 271 THR 272 PRO 273 LEU 274 LEU 275 LEU 276 GLY 277 LYS 278 LYS 279 GLY 280 ILE 281 GLU 282 LYS 283 ASN 284 LEU 285 GLY 286 ILE 287 GLY 288 LYS 289 VAL 290 SER 291 SER 292 PHE 293 GLU 294 GLU 295 LYS 296 MET 297 ILE 298 SER 299 ASP 300 ALA 301 ILE 302 PRO 303 GLU 304 LEU 305 LYS 306 ALA 307 SER 308 ILE 309 LYS 310 LYS 311 GLY 312 GLU 313 ASP 314 PHE 315 VAL 316 LYS 317 THR 318 LEU 319
Unit 4	ASN 6 ALA 7 LYS 8 VAL 9 ALA 10 VAL 11 LEU 12 GLY 13 ALA 14 SER 15 GLY 16 GLY 17 ILE 18 GLY 19 GLN 20 PRO 21 LEU 22 SER 23 LEU 24 LEU 25 LEU 26 LYS 27 ASN 28 SER 29 PRO 30 LEU 31 VAL 32 SER 33 ARG 34 LEU 35 THR 36 LEU 37 TYR 38 ASP 39 ILE 40 ALA 41 HIS 42 THR 43 PRO 44 GLY 45 VAL 46 ALA 47 ALA 48 ASP 49 LEU 50 SER 51 HIS 52 ILE 53 GLU 54 THR 55 LYS 56 ALA 57 ALA 58 VAL 59 LYS 60 GLY 61 TYR 62 LEU 63 GLY 64 PRO 65 GLU 66 GLN 67 LEU 68 PRO 69 ASP 70 CYS 71 LEU 72 LYS 73 GLY 74 CYS 75 ASP 76 VAL 77 VAL 78 VAL 79 ILE 80 PRO 81 ALA 82 GLY 83 VAL 84 PRO 85 ARG 86 LYS 87 PRO 88 GLY 89 MET 90 THR 91 ARG 92 ASP 93 ASP 94 LEU 95 PHE 96 ASN 97 THR 98 ASN 99 ALA 100 THR 101 ILE 102 VAL 103 ALA 104 THR 105 LEU 106 THR 107 ALA 108 ALA 109 CYS 110 ALA 111 GLN 112 HIS 113 CYS 114 PRO 115 GLU 116 ALA 117 MET 118 ILE 119 CYS 120 VAL 121 ILE 122 ALA 123 ASN 124 PRO 125 VAL 126 ASN 127 SER 128 THR 129 ILE 130 PRO 131 ILE 132 THR 133 ALA 134 GLU 135 VAL 136 PHE 137 LYS 138 LYS 139 HIS 140 GLY 141 VAL 142 TYR 143 ASN 144 PRO 145 ASN 146 LYS 147 ILE 148 PHE 149 GLY 150 VAL 151 THR 152 THR 153 LEU 154 ASP 155 ILE 156 VAL 157 ARG 158 ALA 159 ASN 160 THR 161 PHE 162 VAL 163 ALA 164 GLU 165 LEU 166 LYS 167 GLY 168 LEU 169 ASP 170 PRO 171 ALA 172 ARG 173 VAL 174 ASN 175 VAL 176 PRO 177 VAL 178 ILE 179 GLY 180 GLY 181 HIS 182 ALA 183 GLY 184 LYS 185 THR 186 ILE 187 ILE 188 PRO 189 LEU 190 ILE 191 SER 192 GLN 193 CYS 194 THR 195 PRO 196 LYS 197 VAL 198 ASP 199 PHE 200 PRO 201 GLN 202 ASP 203 GLN 204 LEU 205 THR 206 ALA 207 LEU 208 THR 209 GLY 210 ARG 211 ILE 212 GLN 213 GLU 214 ALA 215 GLY 216 THR 217 GLU 218 VAL 219 VAL 220 LYS 221 ALA 222 LYS 223 ALA 224 GLY 225 ALA 226 GLY 227 SER 228 ALA 229 THR 230 LEU 231 SER 232 MET 233 ALA 234 TYR 235 ALA 236 GLY 237 ALA 238 ARG 239 PHE 240 VAL 241 PHE 242 SER 243 LEU 244 VAL 245 ASP 246 ALA 247 MET 248 ASN 249 GLY 250 LYS 251 GLU 252 GLY 253 VAL 254 VAL 255 GLU 256 CYS 257 SER 258 PHE 259 VAL 260 LYS 261 SER 262 GLN 263 GLU 264 THR 265 GLU 266 CYS 267 THR 268 TYR 269 PHE 270 SER 271 THR 272 PRO 273 LEU 274 LEU 275 LEU 276 GLY 277 LYS 278 LYS 279 GLY 280 ILE 281 GLU 282 LYS 283 ASN 284 LEU 285 GLY 286 ILE 287 GLY 288 LYS 289 VAL 290 SER 291 SER 292 PHE 293 GLU 294 GLU 295 LYS 296 MET 297 ILE 298 SER 299 ASP 300 ALA 301 ILE 302 PRO 303 GLU 304 LEU 305 LYS 306 ALA 307 SER 308 ILE 309 LYS 310 LYS 311 GLY 312 GLU 313 ASP 314 PHE 315 VAL 316 LYS 317 THR 318 LEU 319
Unit 5	NAD 3003 MLT 3104 CL 3203 CL 3205 HIS 3301 ALA 3302
Unit 6	NAD 3001 MLT 3102 CL 3206 HIS 3401
Unit 7	NAD 3002 MLT 3103 CL 3201 CL 3204 HIS 3501

Ligands

Unit 8

NAD 3004 MLT 3101 CL 3202 CL 3207