2DD8 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF SARS-COV SPIKE RECEPTOR-BINDING DOMAIN WITH NEUTRALIZING ANTIBODY
• Keywords: SARS, S PROTEIN, ANTIBODY, EPITOPES, VACCINES, INHIBITORS, I SYSTEM-VIRAL PROTEIN COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2DD8	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	IGG HEAVY CHAIN	H	220	1612	0
2	Protein	IGG LIGHT CHAIN	L	212	1598	0
3	Protein	SPIKE GLYCOPROTEIN	S	192	1530	0
4	Ligand	IGG HEAVY CHAIN	H	1	0	5
5	Ligand	SPIKE GLYCOPROTEIN	S	1	0	14
6	Water			298	0	298
total				924	4740	317

Proteins

Unit 1	VAL 2 GLN 3 LEU 4 GLN 5 GLN 6 SER 7 GLY 8 ALA 9 GLU 10 VAL 11 LYS 12 LYS 13 PRO 14 GLY 15 SER 16 SER 17 VAL 18 LYS 19 VAL 20 SER 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 GLY 27 THR 28 PHE 29 SER 30 SER 31 TYR 32 THR 33 ILE 34 SER 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 MET 48 GLY 49 GLY 50 ILE 51 THR 52 PRO 52A ILE 53 LEU 54 GLY 55 ILE 56 ALA 57 ASN 58 TYR 59 ALA 60 GLN 61 LYS 62 PHE 63 GLN 64 GLY 65 ARG 66 VAL 67 THR 68 ILE 69 THR 70 THR 71 ASP 72 GLU 73 SER 74 THR 75 SER 76 THR 77 ALA 78 TYR 79 MET 80 GLU 81 LEU 82 SER 82A SER 82B LEU 82C ARG 83 SER 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 ARG 94 ASP 95 THR 96 VAL 97 MET 98 GLY 99 GLY 100 MET 100A ASP 101 VAL 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 THR 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 SER 127 SER 128 LYS 129 SER 130 THR 131 SER 132 GLY 133 GLY 134 THR 135 SER 136 ALA 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 ASP 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 SER 153 TRP 154 ASN 155 SER 156 GLY 157 ALA 158 LEU 159 THR 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 THR 183 VAL 184 PRO 185 SER 186 SER 187 SER 188 LEU 189 GLY 190 THR 191 GLN 192 THR 193 TYR 194 ILE 195 CYS 196 ASN 197 VAL 198 ASN 199 HIS 200 LYS 201 PRO 202 SER 203 ASN 204 THR 205 LYS 206 VAL 207 ASP 208 LYS 209 LYS 210 VAL 211 GLU 212 PRO 213 LYS 214 SER 215 CYS 216
Unit 2	SER 2 TYR 3 GLU 4 LEU 5 THR 6 GLN 7 PRO 8 PRO 9 SER 10 VAL 11 SER 12 VAL 13 ALA 14 PRO 15 GLY 16 LYS 17 THR 18 ALA 19 ARG 20 ILE 21 THR 22 CYS 23 GLY 24 GLY 25 ASN 26 ASN 27 ILE 28 GLY 29 SER 30 LYS 31 SER 32 VAL 33 HIS 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 GLN 42 ALA 43 PRO 44 VAL 45 LEU 46 VAL 47 VAL 48 TYR 49 ASP 50 ASP 51 SER 52 ASP 53 ARG 54 PRO 55 SER 56 GLY 57 ILE 58 PRO 59 GLU 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 ASN 66 SER 67 GLY 68 ASN 69 THR 70 ALA 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 ARG 77 VAL 78 GLU 79 ALA 80 GLY 81 ASP 82 GLU 83 ALA 84 ASP 85 TYR 86 TYR 87 CYS 88 GLN 89 VAL 90 TRP 91 ASP 92 SER 93 SER 94 SER 95 ASP 95A TYR 96 VAL 97 PHE 98 GLY 99 THR 100 GLY 101 THR 102 LYS 103 VAL 104 THR 105 VAL 106 LEU 107 GLY 108 GLN 109 PRO 110 LYS 111 ALA 112 ASN 113 PRO 114 THR 115 VAL 116 THR 117 LEU 118 PHE 119 PRO 120 PRO 121 SER 122 SER 123 GLU 124 GLU 125 PHE 126 GLN 127 ALA 128 ASN 129 LYS 130 ALA 131 THR 132 LEU 133 VAL 134 CYS 135 LEU 136 ILE 137 SER 138 ASP 139 PHE 140 TYR 141 PRO 142 GLY 143 ALA 144 VAL 145 THR 146 VAL 147 ALA 148 TRP 149 LYS 150 ALA 151 ASP 152 GLY 153 SER 154 PRO 155 VAL 156 LYS 157 ALA 158 GLY 159 VAL 160 GLU 161 THR 162 THR 163 LYS 164 PRO 165 SER 166 LYS 167 GLN 168 SER 169 ASN 170 ASN 172 LYS 173 TYR 174 ALA 175 ALA 176 SER 177 SER 178 TYR 179 LEU 180 SER 181 LEU 182 THR 183 PRO 184 GLU 185 GLN 186 TRP 187 LYS 188 SER 189 HIS 190 ARG 191 SER 192 TYR 193 SER 194 CYS 195 GLN 196 VAL 197 THR 198 HIS 199 GLU 200 GLY 201 SER 202 THR 203 VAL 204 GLU 205 LYS 206 THR 207 VAL 208 ALA 209 PRO 210 THR 211 GLU 212 CYS 213
Unit 3	ASN 321 LEU 322 CYS 323 PRO 324 PHE 325 GLY 326 GLU 327 VAL 328 PHE 329 ASN 330 ALA 331 THR 332 LYS 333 PHE 334 PRO 335 SER 336 VAL 337 TYR 338 ALA 339 TRP 340 GLU 341 ARG 342 LYS 343 LYS 344 ILE 345 SER 346 ASN 347 CYS 348 VAL 349 ALA 350 ASP 351 TYR 352 SER 353 VAL 354 LEU 355 TYR 356 ASN 357 SER 358 THR 359 PHE 360 PHE 361 SER 362 THR 363 PHE 364 LYS 365 CYS 366 TYR 367 GLY 368 VAL 369 SER 370 ALA 371 THR 372 LYS 373 LEU 374 ASN 375 ASP 376 LEU 377 CYS 378 PHE 379 SER 380 ASN 381 VAL 382 TYR 383 ALA 384 ASP 385 SER 386 PHE 387 VAL 388 VAL 389 LYS 390 GLY 391 ASP 392 ASP 393 VAL 394 ARG 395 GLN 396 ILE 397 ALA 398 PRO 399 GLY 400 GLN 401 THR 402 GLY 403 VAL 404 ILE 405 ALA 406 ASP 407 TYR 408 ASN 409 TYR 410 LYS 411 LEU 412 PRO 413 ASP 414 ASP 415 PHE 416 MET 417 GLY 418 CYS 419 VAL 420 LEU 421 ALA 422 TRP 423 ASN 424 THR 425 ARG 426 ASN 427 ILE 428 ASP 429 ALA 430 THR 431 SER 432 THR 433 GLY 434 ASN 435 TYR 436 ASN 437 TYR 438 LYS 439 TYR 440 ARG 441 TYR 442 LEU 443 ARG 444 HIS 445 GLY 446 LYS 447 LEU 448 ARG 449 PRO 450 PHE 451 GLU 452 ARG 453 ASP 454 ILE 455 SER 456 ASN 457 VAL 458 PRO 459 PHE 460 SER 461 PRO 462 ASP 463 GLY 464 LYS 465 PRO 466 CYS 467 THR 468 PRO 469 PRO 470 ALA 471 LEU 472 ASN 473 CYS 474 TYR 475 TRP 476 PRO 477 LEU 478 ASN 479 ASP 480 TYR 481 GLY 482 PHE 483 TYR 484 THR 485 THR 486 THR 487 GLY 488 ILE 489 GLY 490 TYR 491 GLN 492 PRO 493 TYR 494 ARG 495 VAL 496 VAL 497 VAL 498 LEU 499 SER 500 PHE 501 GLU 502 LEU 503 LEU 504 ASN 505 ALA 506 PRO 507 ALA 508 THR 509 VAL 510 CYS 511 GLY 512

Ligands

Unit 4	PO4 501
Unit 5	NAG 1330