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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF GLYCEROL KINASE FROM CELLULOMONAS SP. NT3060
Keywords ALPHA AND BETA PROTEIN, RIBONUCLEASE H-LIKE MOTIF, ACTIN- LIKE ATPASE DOMAIN, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2D4W     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLYCEROL KINASE  A 503 3877 0
2  Protein   GLYCEROL KINASE  B 503 3877 0
3  Ligand   GLYCEROL KINASE  A 2 0 16
4  Ligand   GLYCEROL KINASE  B 2 0 16
5 Water     353 0 353
total       1363 7754 385
Proteins
Unit 1 ALA2 ASP3 TYR4 VAL5 LEU6 ALA7 ILE8 ASP9 GLN10 GLY11 THR12 THR13 SER14 SER15 ARG16 ALA17 ILE18 VAL19 PHE20 ASP21 HIS22 SER23 GLY24 GLU25 ILE26 TYR27 SER28 THR29 GLY30 GLN31 LEU32 GLU33 HIS34 ASP35 GLN36 ILE37 PHE38 PRO39 ARG40 ALA41 GLY42 TRP43 VAL44 GLU45 HIS46 ASN47 PRO48 GLU49 GLN50 ILE51 TRP52 ASN53 ASN54 VAL55 ARG56 GLU57 VAL58 VAL59 GLY60 LEU61 ALA62 LEU63 THR64 ARG65 GLY66 ASN67 LEU68 THR69 HIS70 GLU71 ASP72 ILE73 ALA74 ALA75 VAL76 GLY77 ILE78 THR79 ASN80 GLN81 ARG82 GLU83 THR84 ALA85 VAL86 VAL87 TRP88 ASP89 LYS90 THR91 THR92 GLY93 LYS94 PRO95 VAL96 TYR97 ASN98 ALA99 ILE100 VAL101 TRP102 GLN103 ASP104 THR105 ARG106 THR107 GLN108 LYS109 ILE110 VAL111 ASP112 GLU113 LEU114 GLY115 GLY116 ASP117 GLU118 GLY119 ALA120 GLU121 LYS122 TYR123 LYS124 SER125 ILE126 VAL127 GLY128 LEU129 PRO130 LEU131 ALA132 THR133 TYR134 PHE135 SER136 GLY137 PRO138 LYS139 ILE140 LYS141 TRP142 ILE143 LEU144 ASP145 ASN146 VAL147 GLU148 GLY149 ALA150 ARG151 GLU152 LYS153 ALA154 GLU155 LYS156 GLY157 ASP158 LEU159 LEU160 PHE161 GLY162 ASN163 THR164 ASP165 THR166 TRP167 VAL168 LEU169 TRP170 ASN171 MET172 THR173 GLY174 GLY175 THR176 GLU177 GLY178 GLY179 VAL180 HIS181 VAL182 THR183 ASP184 VAL185 THR186 ASN187 ALA188 SER189 ARG190 THR191 MET192 LEU193 MET194 ASP195 LEU196 ASP197 THR198 LEU199 SER200 TRP201 ARG202 GLU203 ASP204 ILE205 ALA206 ALA207 ASP208 MET209 GLY210 ILE211 PRO212 LEU213 SER214 MET215 LEU216 PRO217 ASP218 ILE219 ARG220 SER221 SER222 SER223 GLU224 VAL225 TYR226 GLY227 HIS228 GLY229 ARG230 PRO231 ARG232 GLY233 LEU234 VAL235 PRO236 GLY237 VAL238 PRO239 ILE240 ALA241 GLY242 ILE243 LEU244 GLY245 ASP246 GLN247 GLN248 ALA249 ALA250 THR251 PHE252 GLY253 GLN254 ALA255 CYS256 PHE257 GLU258 VAL259 GLY260 GLN261 ALA262 LYS263 ASN264 THR265 TYR266 GLY267 THR268 GLY269 ASN270 PHE271 LEU272 LEU273 LEU274 ASN275 THR276 GLY277 THR278 GLU279 LYS280 VAL281 MET282 SER283 LYS284 ASN285 GLY286 LEU287 LEU288 THR289 THR290 VAL291 CYS292 TYR293 LYS294 ILE295 GLY296 ASP297 ALA298 PRO299 ALA300 VAL301 TYR302 ALA303 LEU304 GLU305 GLY306 SER307 ILE308 ALA309 VAL310 THR311 GLY312 SER313 LEU314 VAL315 GLN316 TRP317 LEU318 ARG319 ASP320 ASN321 LEU322 GLY323 MET324 PHE325 GLU326 ASP327 ALA328 PRO329 ASP330 VAL331 GLU332 TRP333 LEU334 ALA335 GLY336 LYS337 VAL338 GLN339 ASP340 ASN341 GLY342 GLY343 ALA344 TYR345 PHE346 VAL347 PRO348 ALA349 PHE350 SER351 GLY352 LEU353 PHE354 ALA355 PRO356 TYR357 TRP358 ARG359 PRO360 ASP361 ALA362 ARG363 GLY364 ALA365 LEU366 VAL367 GLY368 LEU369 THR370 ARG371 TYR372 VAL373 ASN374 ARG375 ASN376 HIS377 ILE378 ALA379 ARG380 ALA381 ALA382 LEU383 GLU384 ALA385 THR386 ALA387 PHE388 GLN389 SER390 ARG391 GLU392 VAL393 VAL394 ASP395 ALA396 MET397 ASN398 ALA399 ASP400 SER401 GLY402 VAL403 ASP404 LEU405 THR406 GLU407 LEU408 ARG409 VAL410 ASP411 GLY412 GLY413 MET414 VAL415 ALA416 ASN417 GLU418 LEU419 LEU420 MET421 GLN422 PHE423 GLN424 ALA425 ASP426 GLN427 LEU428 GLY429 VAL430 ASP431 VAL432 VAL433 ARG434 PRO435 LYS436 VAL437 ALA438 GLU439 THR440 THR441 ALA442 LEU443 GLY444 ALA445 ALA446 TYR447 ALA448 ALA449 GLY450 ILE451 ALA452 VAL453 GLY454 PHE455 TRP456 LYS457 GLY458 GLU459 GLN460 ASP461 VAL462 ILE463 ASP464 ASN465 TRP466 ALA467 GLU468 ASP469 LYS470 ARG471 TRP472 SER473 PRO474 SER475 MET476 GLU477 SER478 GLY479 GLU480 ARG481 GLU482 ARG483 LEU484 TYR485 ARG486 ASN487 TRP488 LYS489 LYS490 ALA491 VAL492 THR493 LYS494 THR495 MET496 GLU497 TRP498 VAL499 ASP500 GLU501 ASP502 VAL503 GLU504
Unit 2 ALA2 ASP3 TYR4 VAL5 LEU6 ALA7 ILE8 ASP9 GLN10 GLY11 THR12 THR13 SER14 SER15 ARG16 ALA17 ILE18 VAL19 PHE20 ASP21 HIS22 SER23 GLY24 GLU25 ILE26 TYR27 SER28 THR29 GLY30 GLN31 LEU32 GLU33 HIS34 ASP35 GLN36 ILE37 PHE38 PRO39 ARG40 ALA41 GLY42 TRP43 VAL44 GLU45 HIS46 ASN47 PRO48 GLU49 GLN50 ILE51 TRP52 ASN53 ASN54 VAL55 ARG56 GLU57 VAL58 VAL59 GLY60 LEU61 ALA62 LEU63 THR64 ARG65 GLY66 ASN67 LEU68 THR69 HIS70 GLU71 ASP72 ILE73 ALA74 ALA75 VAL76 GLY77 ILE78 THR79 ASN80 GLN81 ARG82 GLU83 THR84 ALA85 VAL86 VAL87 TRP88 ASP89 LYS90 THR91 THR92 GLY93 LYS94 PRO95 VAL96 TYR97 ASN98 ALA99 ILE100 VAL101 TRP102 GLN103 ASP104 THR105 ARG106 THR107 GLN108 LYS109 ILE110 VAL111 ASP112 GLU113 LEU114 GLY115 GLY116 ASP117 GLU118 GLY119 ALA120 GLU121 LYS122 TYR123 LYS124 SER125 ILE126 VAL127 GLY128 LEU129 PRO130 LEU131 ALA132 THR133 TYR134 PHE135 SER136 GLY137 PRO138 LYS139 ILE140 LYS141 TRP142 ILE143 LEU144 ASP145 ASN146 VAL147 GLU148 GLY149 ALA150 ARG151 GLU152 LYS153 ALA154 GLU155 LYS156 GLY157 ASP158 LEU159 LEU160 PHE161 GLY162 ASN163 THR164 ASP165 THR166 TRP167 VAL168 LEU169 TRP170 ASN171 MET172 THR173 GLY174 GLY175 THR176 GLU177 GLY178 GLY179 VAL180 HIS181 VAL182 THR183 ASP184 VAL185 THR186 ASN187 ALA188 SER189 ARG190 THR191 MET192 LEU193 MET194 ASP195 LEU196 ASP197 THR198 LEU199 SER200 TRP201 ARG202 GLU203 ASP204 ILE205 ALA206 ALA207 ASP208 MET209 GLY210 ILE211 PRO212 LEU213 SER214 MET215 LEU216 PRO217 ASP218 ILE219 ARG220 SER221 SER222 SER223 GLU224 VAL225 TYR226 GLY227 HIS228 GLY229 ARG230 PRO231 ARG232 GLY233 LEU234 VAL235 PRO236 GLY237 VAL238 PRO239 ILE240 ALA241 GLY242 ILE243 LEU244 GLY245 ASP246 GLN247 GLN248 ALA249 ALA250 THR251 PHE252 GLY253 GLN254 ALA255 CYS256 PHE257 GLU258 VAL259 GLY260 GLN261 ALA262 LYS263 ASN264 THR265 TYR266 GLY267 THR268 GLY269 ASN270 PHE271 LEU272 LEU273 LEU274 ASN275 THR276 GLY277 THR278 GLU279 LYS280 VAL281 MET282 SER283 LYS284 ASN285 GLY286 LEU287 LEU288 THR289 THR290 VAL291 CYS292 TYR293 LYS294 ILE295 GLY296 ASP297 ALA298 PRO299 ALA300 VAL301 TYR302 ALA303 LEU304 GLU305 GLY306 SER307 ILE308 ALA309 VAL310 THR311 GLY312 SER313 LEU314 VAL315 GLN316 TRP317 LEU318 ARG319 ASP320 ASN321 LEU322 GLY323 MET324 PHE325 GLU326 ASP327 ALA328 PRO329 ASP330 VAL331 GLU332 TRP333 LEU334 ALA335 GLY336 LYS337 VAL338 GLN339 ASP340 ASN341 GLY342 GLY343 ALA344 TYR345 PHE346 VAL347 PRO348 ALA349 PHE350 SER351 GLY352 LEU353 PHE354 ALA355 PRO356 TYR357 TRP358 ARG359 PRO360 ASP361 ALA362 ARG363 GLY364 ALA365 LEU366 VAL367 GLY368 LEU369 THR370 ARG371 TYR372 VAL373 ASN374 ARG375 ASN376 HIS377 ILE378 ALA379 ARG380 ALA381 ALA382 LEU383 GLU384 ALA385 THR386 ALA387 PHE388 GLN389 SER390 ARG391 GLU392 VAL393 VAL394 ASP395 ALA396 MET397 ASN398 ALA399 ASP400 SER401 GLY402 VAL403 ASP404 LEU405 THR406 GLU407 LEU408 ARG409 VAL410 ASP411 GLY412 GLY413 MET414 VAL415 ALA416 ASN417 GLU418 LEU419 LEU420 MET421 GLN422 PHE423 GLN424 ALA425 ASP426 GLN427 LEU428 GLY429 VAL430 ASP431 VAL432 VAL433 ARG434 PRO435 LYS436 VAL437 ALA438 GLU439 THR440 THR441 ALA442 LEU443 GLY444 ALA445 ALA446 TYR447 ALA448 ALA449 GLY450 ILE451 ALA452 VAL453 GLY454 PHE455 TRP456 LYS457 GLY458 GLU459 GLN460 ASP461 VAL462 ILE463 ASP464 ASN465 TRP466 ALA467 GLU468 ASP469 LYS470 ARG471 TRP472 SER473 PRO474 SER475 MET476 GLU477 SER478 GLY479 GLU480 ARG481 GLU482 ARG483 LEU484 TYR485 ARG486 ASN487 TRP488 LYS489 LYS490 ALA491 VAL492 THR493 LYS494 THR495 MET496 GLU497 TRP498 VAL499 ASP500 GLU501 ASP502 VAL503 GLU504
Ligands
Unit 3 MPD1 MPD2001
Unit 4 MPD1001 MPD3001
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany