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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF NAD DEPENDENT ISOCITRATE DEHYDROGENASE FROM ACIDITHIOBACILLUS THIOOXIDANS
Keywords ALPHA AND BETA PROTEIN, ISOCITRATE/ISOPROPYLMALATE DEHYDROGENASE-LIKE FOLD, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2D4V     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ISOCITRATE DEHYDROGENASE  A 427 3236 0
2  Protein   ISOCITRATE DEHYDROGENASE  B 427 3236 0
3  Protein   ISOCITRATE DEHYDROGENASE  C 427 3235 0
4  Protein   ISOCITRATE DEHYDROGENASE  D 427 3236 0
5  Ligand   ISOCITRATE DEHYDROGENASE  A 2 0 57
6  Ligand   ISOCITRATE DEHYDROGENASE  B 2 0 57
7  Ligand   ISOCITRATE DEHYDROGENASE  C 2 0 57
8  Ligand   ISOCITRATE DEHYDROGENASE  D 2 0 57
9 Water     1333 0 1333
total       3049 12943 1561
Proteins
Unit 1 THR3 HIS4 ILE5 GLN6 LYS7 PRO8 ALA9 THR10 GLY11 SER12 PRO13 LEU14 THR15 LEU16 LEU17 ASN18 GLY19 VAL20 LEU21 GLN22 VAL23 PRO24 ASP25 GLN26 PRO27 ILE28 ILE29 PRO30 PHE31 ILE32 GLU33 GLY34 ASP35 GLY36 ILE37 GLY38 CYS39 ASP40 VAL41 THR42 PRO43 ALA44 MET45 ARG46 SER47 VAL48 VAL49 ASP50 ALA51 ALA52 VAL53 ALA54 LYS55 VAL56 TYR57 GLY58 GLY59 GLN60 ARG61 GLN62 ILE63 ALA64 TRP65 MET66 GLU67 LEU68 PHE69 ALA70 GLY71 GLN72 LYS73 ALA74 VAL75 GLN76 LEU77 TYR78 GLY79 GLU80 GLY81 GLN82 TYR83 LEU84 PRO85 ASP86 GLU87 THR88 MET89 ALA90 ALA91 ILE92 ARG93 GLU94 TYR95 LYS96 VAL97 ALA98 ILE99 LYS100 GLY101 PRO102 LEU103 GLU104 THR105 PRO106 VAL107 GLY108 GLY109 GLY110 ILE111 ARG112 SER113 LEU114 ASN115 VAL116 ALA117 MET118 ARG119 GLN120 ASP121 LEU122 ASP123 LEU124 TYR125 VAL126 CYS127 LEU128 ARG129 PRO130 VAL131 ARG132 TYR133 PHE134 GLU135 GLY136 THR137 PRO138 SER139 PRO140 MET141 ARG142 HIS143 PRO144 GLU145 LYS146 VAL147 ASP148 MET149 VAL150 ILE151 PHE152 ARG153 GLU154 ASN155 SER156 GLU157 ASP158 ILE159 TYR160 ALA161 GLY162 ILE163 GLU164 TRP165 PRO166 ALA167 GLY168 SER169 PRO170 GLU171 ALA172 GLU173 LYS174 ILE175 ILE176 ARG177 PHE178 LEU179 ARG180 GLU181 GLU182 MET183 GLY184 VAL185 THR186 LYS187 ILE188 ARG189 PHE190 PRO191 ASP192 SER193 SER194 ALA195 ILE196 GLY197 ILE198 LYS199 PRO200 VAL201 SER202 THR203 GLU204 GLY205 SER206 GLU207 ARG208 LEU209 ILE210 ARG211 ARG212 THR213 ILE214 GLN215 TYR216 ALA217 LEU218 GLU219 HIS220 GLY221 LYS222 PRO223 SER224 VAL225 SER226 LEU227 VAL228 HIS229 LYS230 GLY231 ASN232 ILE233 MET234 LYS235 PHE236 THR237 GLU238 GLY239 GLY240 PHE241 ARG242 ASP243 TRP244 GLY245 TYR246 ALA247 LEU248 ALA249 GLU250 ARG251 GLU252 PHE253 ALA254 GLY255 ARG256 VAL257 PHE258 THR259 TRP260 ARG261 GLN262 LYS263 ALA264 ALA265 ILE266 SER267 LYS268 ALA269 GLU270 GLY271 LYS272 ALA273 ALA274 GLY275 GLN276 LYS277 ALA278 GLU279 GLN280 GLN281 ALA282 ILE283 ALA284 ASP285 GLY286 LYS287 LEU288 ILE289 ILE290 LYS291 ASP292 VAL293 ILE294 ALA295 ASP296 ASN297 PHE298 LEU299 GLN300 GLN301 ILE302 LEU303 LEU304 ARG305 PRO306 GLU307 ASP308 TYR309 SER310 VAL311 VAL312 ALA313 THR314 LEU315 ASN316 LEU317 ASN318 GLY319 ASP320 TYR321 VAL322 SER323 ASP324 ALA325 LEU326 ALA327 ALA328 GLU329 VAL330 GLY331 GLY332 ILE333 GLY334 MET335 ALA336 PRO337 GLY338 ALA339 ASN340 LEU341 SER342 ASP343 THR344 HIS345 ALA346 ILE347 PHE348 GLU349 ALA350 THR351 HIS352 GLY353 THR354 ALA355 PRO356 ASP357 ILE358 ALA359 GLY360 GLN361 GLY362 LYS363 ALA364 ASN365 PRO366 SER367 SER368 LEU369 ILE370 LEU371 SER372 ALA373 VAL374 MET375 MET376 LEU377 GLU378 HIS379 LEU380 GLY381 TRP382 GLY383 GLU384 ALA385 ALA386 GLN387 ALA388 ILE389 VAL390 ALA391 ALA392 MET393 ASN394 ALA395 THR396 ILE397 ALA398 ALA399 GLY400 GLU401 VAL402 THR403 GLY404 ASP405 LEU406 ALA407 ALA408 LEU409 ARG410 GLY411 ASP412 VAL413 PRO414 ALA415 LEU416 SER417 THR418 THR419 GLU420 PHE421 THR422 ALA423 ALA424 LEU425 ILE426 ARG427 ARG428 PHE429
Unit 2 THR3 HIS4 ILE5 GLN6 LYS7 PRO8 ALA9 THR10 GLY11 SER12 PRO13 LEU14 THR15 LEU16 LEU17 ASN18 GLY19 VAL20 LEU21 GLN22 VAL23 PRO24 ASP25 GLN26 PRO27 ILE28 ILE29 PRO30 PHE31 ILE32 GLU33 GLY34 ASP35 GLY36 ILE37 GLY38 CYS39 ASP40 VAL41 THR42 PRO43 ALA44 MET45 ARG46 SER47 VAL48 VAL49 ASP50 ALA51 ALA52 VAL53 ALA54 LYS55 VAL56 TYR57 GLY58 GLY59 GLN60 ARG61 GLN62 ILE63 ALA64 TRP65 MET66 GLU67 LEU68 PHE69 ALA70 GLY71 GLN72 LYS73 ALA74 VAL75 GLN76 LEU77 TYR78 GLY79 GLU80 GLY81 GLN82 TYR83 LEU84 PRO85 ASP86 GLU87 THR88 MET89 ALA90 ALA91 ILE92 ARG93 GLU94 TYR95 LYS96 VAL97 ALA98 ILE99 LYS100 GLY101 PRO102 LEU103 GLU104 THR105 PRO106 VAL107 GLY108 GLY109 GLY110 ILE111 ARG112 SER113 LEU114 ASN115 VAL116 ALA117 MET118 ARG119 GLN120 ASP121 LEU122 ASP123 LEU124 TYR125 VAL126 CYS127 LEU128 ARG129 PRO130 VAL131 ARG132 TYR133 PHE134 GLU135 GLY136 THR137 PRO138 SER139 PRO140 MET141 ARG142 HIS143 PRO144 GLU145 LYS146 VAL147 ASP148 MET149 VAL150 ILE151 PHE152 ARG153 GLU154 ASN155 SER156 GLU157 ASP158 ILE159 TYR160 ALA161 GLY162 ILE163 GLU164 TRP165 PRO166 ALA167 GLY168 SER169 PRO170 GLU171 ALA172 GLU173 LYS174 ILE175 ILE176 ARG177 PHE178 LEU179 ARG180 GLU181 GLU182 MET183 GLY184 VAL185 THR186 LYS187 ILE188 ARG189 PHE190 PRO191 ASP192 SER193 SER194 ALA195 ILE196 GLY197 ILE198 LYS199 PRO200 VAL201 SER202 THR203 GLU204 GLY205 SER206 GLU207 ARG208 LEU209 ILE210 ARG211 ARG212 THR213 ILE214 GLN215 TYR216 ALA217 LEU218 GLU219 HIS220 GLY221 LYS222 PRO223 SER224 VAL225 SER226 LEU227 VAL228 HIS229 LYS230 GLY231 ASN232 ILE233 MET234 LYS235 PHE236 THR237 GLU238 GLY239 GLY240 PHE241 ARG242 ASP243 TRP244 GLY245 TYR246 ALA247 LEU248 ALA249 GLU250 ARG251 GLU252 PHE253 ALA254 GLY255 ARG256 VAL257 PHE258 THR259 TRP260 ARG261 GLN262 LYS263 ALA264 ALA265 ILE266 SER267 LYS268 ALA269 GLU270 GLY271 LYS272 ALA273 ALA274 GLY275 GLN276 LYS277 ALA278 GLU279 GLN280 GLN281 ALA282 ILE283 ALA284 ASP285 GLY286 LYS287 LEU288 ILE289 ILE290 LYS291 ASP292 VAL293 ILE294 ALA295 ASP296 ASN297 PHE298 LEU299 GLN300 GLN301 ILE302 LEU303 LEU304 ARG305 PRO306 GLU307 ASP308 TYR309 SER310 VAL311 VAL312 ALA313 THR314 LEU315 ASN316 LEU317 ASN318 GLY319 ASP320 TYR321 VAL322 SER323 ASP324 ALA325 LEU326 ALA327 ALA328 GLU329 VAL330 GLY331 GLY332 ILE333 GLY334 MET335 ALA336 PRO337 GLY338 ALA339 ASN340 LEU341 SER342 ASP343 THR344 HIS345 ALA346 ILE347 PHE348 GLU349 ALA350 THR351 HIS352 GLY353 THR354 ALA355 PRO356 ASP357 ILE358 ALA359 GLY360 GLN361 GLY362 LYS363 ALA364 ASN365 PRO366 SER367 SER368 LEU369 ILE370 LEU371 SER372 ALA373 VAL374 MET375 MET376 LEU377 GLU378 HIS379 LEU380 GLY381 TRP382 GLY383 GLU384 ALA385 ALA386 GLN387 ALA388 ILE389 VAL390 ALA391 ALA392 MET393 ASN394 ALA395 THR396 ILE397 ALA398 ALA399 GLY400 GLU401 VAL402 THR403 GLY404 ASP405 LEU406 ALA407 ALA408 LEU409 ARG410 GLY411 ASP412 VAL413 PRO414 ALA415 LEU416 SER417 THR418 THR419 GLU420 PHE421 THR422 ALA423 ALA424 LEU425 ILE426 ARG427 ARG428 PHE429
Unit 3 THR3 HIS4 ILE5 GLN6 LYS7 PRO8 ALA9 THR10 GLY11 SER12 PRO13 LEU14 THR15 LEU16 LEU17 ASN18 GLY19 VAL20 LEU21 GLN22 VAL23 PRO24 ASP25 GLN26 PRO27 ILE28 ILE29 PRO30 PHE31 ILE32 GLU33 GLY34 ASP35 GLY36 ILE37 GLY38 CYS39 ASP40 VAL41 THR42 PRO43 ALA44 MET45 ARG46 SER47 VAL48 VAL49 ASP50 ALA51 ALA52 VAL53 ALA54 LYS55 VAL56 TYR57 GLY58 GLY59 GLN60 ARG61 GLN62 ILE63 ALA64 TRP65 MET66 GLU67 LEU68 PHE69 ALA70 GLY71 GLN72 LYS73 ALA74 VAL75 GLN76 LEU77 TYR78 GLY79 GLU80 GLY81 GLN82 TYR83 LEU84 PRO85 ASP86 GLU87 THR88 MET89 ALA90 ALA91 ILE92 ARG93 GLU94 TYR95 LYS96 VAL97 ALA98 ILE99 LYS100 GLY101 PRO102 LEU103 GLU104 THR105 PRO106 VAL107 GLY108 GLY109 GLY110 ILE111 ARG112 SER113 LEU114 ASN115 VAL116 ALA117 MET118 ARG119 GLN120 ASP121 LEU122 ASP123 LEU124 TYR125 VAL126 CYS127 LEU128 ARG129 PRO130 VAL131 ARG132 TYR133 PHE134 GLU135 GLY136 THR137 PRO138 SER139 PRO140 MET141 ARG142 HIS143 PRO144 GLU145 LYS146 VAL147 ASP148 MET149 VAL150 ILE151 PHE152 ARG153 GLU154 ASN155 SER156 GLU157 ASP158 ILE159 TYR160 ALA161 GLY162 ILE163 GLU164 TRP165 PRO166 ALA167 GLY168 SER169 PRO170 GLU171 ALA172 GLU173 LYS174 ILE175 ILE176 ARG177 PHE178 LEU179 ARG180 GLU181 GLU182 MET183 GLY184 VAL185 THR186 LYS187 ILE188 ARG189 PHE190 PRO191 ASP192 SER193 SER194 ALA195 ILE196 GLY197 ILE198 LYS199 PRO200 VAL201 SER202 THR203 GLU204 GLY205 SER206 GLU207 ARG208 LEU209 ILE210 ARG211 ARG212 THR213 ILE214 GLN215 TYR216 ALA217 LEU218 GLU219 HIS220 GLY221 LYS222 PRO223 SER224 VAL225 SER226 LEU227 VAL228 HIS229 LYS230 GLY231 ASN232 ILE233 MET234 LYS235 PHE236 THR237 GLU238 GLY239 GLY240 PHE241 ARG242 ASP243 TRP244 GLY245 TYR246 ALA247 LEU248 ALA249 GLU250 ARG251 GLU252 PHE253 ALA254 GLY255 ARG256 VAL257 PHE258 THR259 TRP260 ARG261 GLN262 LYS263 ALA264 ALA265 ILE266 SER267 LYS268 ALA269 GLU270 GLY271 LYS272 ALA273 ALA274 GLY275 GLN276 LYS277 ALA278 GLU279 GLN280 GLN281 ALA282 ILE283 ALA284 ASP285 GLY286 LYS287 LEU288 ILE289 ILE290 LYS291 ASP292 VAL293 ILE294 ALA295 ASP296 ASN297 PHE298 LEU299 GLN300 GLN301 ILE302 LEU303 LEU304 ARG305 PRO306 GLU307 ASP308 TYR309 SER310 VAL311 VAL312 ALA313 THR314 LEU315 ASN316 LEU317 ASN318 GLY319 ASP320 TYR321 VAL322 SER323 ASP324 ALA325 LEU326 ALA327 ALA328 GLU329 VAL330 GLY331 GLY332 ILE333 GLY334 MET335 ALA336 PRO337 GLY338 ALA339 ASN340 LEU341 SER342 ASP343 THR344 HIS345 ALA346 ILE347 PHE348 GLU349 ALA350 THR351 HIS352 GLY353 THR354 ALA355 PRO356 ASP357 ILE358 ALA359 GLY360 GLN361 GLY362 LYS363 ALA364 ASN365 PRO366 SER367 SER368 LEU369 ILE370 LEU371 SER372 ALA373 VAL374 MET375 MET376 LEU377 GLU378 HIS379 LEU380 GLY381 TRP382 GLY383 GLU384 ALA385 ALA386 GLN387 ALA388 ILE389 VAL390 ALA391 ALA392 MET393 ASN394 ALA395 THR396 ILE397 ALA398 ALA399 GLY400 GLU401 VAL402 THR403 GLY404 ASP405 LEU406 ALA407 ALA408 LEU409 ARG410 GLY411 ASP412 VAL413 PRO414 ALA415 LEU416 SER417 THR418 THR419 GLU420 PHE421 THR422 ALA423 ALA424 LEU425 ILE426 ARG427 ARG428 PHE429
Unit 4 THR3 HIS4 ILE5 GLN6 LYS7 PRO8 ALA9 THR10 GLY11 SER12 PRO13 LEU14 THR15 LEU16 LEU17 ASN18 GLY19 VAL20 LEU21 GLN22 VAL23 PRO24 ASP25 GLN26 PRO27 ILE28 ILE29 PRO30 PHE31 ILE32 GLU33 GLY34 ASP35 GLY36 ILE37 GLY38 CYS39 ASP40 VAL41 THR42 PRO43 ALA44 MET45 ARG46 SER47 VAL48 VAL49 ASP50 ALA51 ALA52 VAL53 ALA54 LYS55 VAL56 TYR57 GLY58 GLY59 GLN60 ARG61 GLN62 ILE63 ALA64 TRP65 MET66 GLU67 LEU68 PHE69 ALA70 GLY71 GLN72 LYS73 ALA74 VAL75 GLN76 LEU77 TYR78 GLY79 GLU80 GLY81 GLN82 TYR83 LEU84 PRO85 ASP86 GLU87 THR88 MET89 ALA90 ALA91 ILE92 ARG93 GLU94 TYR95 LYS96 VAL97 ALA98 ILE99 LYS100 GLY101 PRO102 LEU103 GLU104 THR105 PRO106 VAL107 GLY108 GLY109 GLY110 ILE111 ARG112 SER113 LEU114 ASN115 VAL116 ALA117 MET118 ARG119 GLN120 ASP121 LEU122 ASP123 LEU124 TYR125 VAL126 CYS127 LEU128 ARG129 PRO130 VAL131 ARG132 TYR133 PHE134 GLU135 GLY136 THR137 PRO138 SER139 PRO140 MET141 ARG142 HIS143 PRO144 GLU145 LYS146 VAL147 ASP148 MET149 VAL150 ILE151 PHE152 ARG153 GLU154 ASN155 SER156 GLU157 ASP158 ILE159 TYR160 ALA161 GLY162 ILE163 GLU164 TRP165 PRO166 ALA167 GLY168 SER169 PRO170 GLU171 ALA172 GLU173 LYS174 ILE175 ILE176 ARG177 PHE178 LEU179 ARG180 GLU181 GLU182 MET183 GLY184 VAL185 THR186 LYS187 ILE188 ARG189 PHE190 PRO191 ASP192 SER193 SER194 ALA195 ILE196 GLY197 ILE198 LYS199 PRO200 VAL201 SER202 THR203 GLU204 GLY205 SER206 GLU207 ARG208 LEU209 ILE210 ARG211 ARG212 THR213 ILE214 GLN215 TYR216 ALA217 LEU218 GLU219 HIS220 GLY221 LYS222 PRO223 SER224 VAL225 SER226 LEU227 VAL228 HIS229 LYS230 GLY231 ASN232 ILE233 MET234 LYS235 PHE236 THR237 GLU238 GLY239 GLY240 PHE241 ARG242 ASP243 TRP244 GLY245 TYR246 ALA247 LEU248 ALA249 GLU250 ARG251 GLU252 PHE253 ALA254 GLY255 ARG256 VAL257 PHE258 THR259 TRP260 ARG261 GLN262 LYS263 ALA264 ALA265 ILE266 SER267 LYS268 ALA269 GLU270 GLY271 LYS272 ALA273 ALA274 GLY275 GLN276 LYS277 ALA278 GLU279 GLN280 GLN281 ALA282 ILE283 ALA284 ASP285 GLY286 LYS287 LEU288 ILE289 ILE290 LYS291 ASP292 VAL293 ILE294 ALA295 ASP296 ASN297 PHE298 LEU299 GLN300 GLN301 ILE302 LEU303 LEU304 ARG305 PRO306 GLU307 ASP308 TYR309 SER310 VAL311 VAL312 ALA313 THR314 LEU315 ASN316 LEU317 ASN318 GLY319 ASP320 TYR321 VAL322 SER323 ASP324 ALA325 LEU326 ALA327 ALA328 GLU329 VAL330 GLY331 GLY332 ILE333 GLY334 MET335 ALA336 PRO337 GLY338 ALA339 ASN340 LEU341 SER342 ASP343 THR344 HIS345 ALA346 ILE347 PHE348 GLU349 ALA350 THR351 HIS352 GLY353 THR354 ALA355 PRO356 ASP357 ILE358 ALA359 GLY360 GLN361 GLY362 LYS363 ALA364 ASN365 PRO366 SER367 SER368 LEU369 ILE370 LEU371 SER372 ALA373 VAL374 MET375 MET376 LEU377 GLU378 HIS379 LEU380 GLY381 TRP382 GLY383 GLU384 ALA385 ALA386 GLN387 ALA388 ILE389 VAL390 ALA391 ALA392 MET393 ASN394 ALA395 THR396 ILE397 ALA398 ALA399 GLY400 GLU401 VAL402 THR403 GLY404 ASP405 LEU406 ALA407 ALA408 LEU409 ARG410 GLY411 ASP412 VAL413 PRO414 ALA415 LEU416 SER417 THR418 THR419 GLU420 PHE421 THR422 ALA423 ALA424 LEU425 ILE426 ARG427 ARG428 PHE429
Ligands
Unit 5 NAD2001 FLC3001
Unit 6 NAD2101 FLC3101
Unit 7 NAD2201 FLC3201
Unit 8 NAD2301 FLC3301
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany