2D4A - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF THE MALATE DEHYDROGENASE FROM AEROPYRUM PERNIX
• Keywords: MALATE DEHYDROGENASE, ARCHAEA, HYPERTHERMOPHILE, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2D4A	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	MALATE DEHYDROGENASE	B	301	2289	0
2	Protein	MALATE DEHYDROGENASE	A	298	2262	0
3	Protein	MALATE DEHYDROGENASE	D	308	2346	0
4	Protein	MALATE DEHYDROGENASE	C	299	2274	0
5	Water			121	0	121
total				1327	9171	121

Proteins

Unit 1	MET 1 ILE 2 THR 3 ILE 4 LEU 5 GLY 6 ALA 7 GLY 8 LYS 9 VAL 10 GLY 11 MET 12 ALA 13 THR 14 ALA 15 VAL 16 MET 17 LEU 18 MET 19 MET 20 ARG 21 GLY 22 TYR 23 ASP 24 ASP 25 LEU 26 LEU 27 LEU 28 ILE 29 ALA 30 ARG 31 THR 32 PRO 33 GLY 34 LYS 35 PRO 36 GLN 37 GLY 38 GLU 39 ALA 40 LEU 41 ASP 42 LEU 43 ALA 44 HIS 45 ALA 46 ALA 47 ALA 48 GLU 49 LEU 50 GLY 51 VAL 52 ASP 53 ILE 54 ARG 55 ILE 56 SER 57 GLY 58 SER 59 ASN 60 SER 61 TYR 62 GLU 63 ASP 64 MET 65 ARG 66 GLY 67 SER 68 ASP 69 ILE 70 VAL 71 LEU 72 VAL 73 THR 74 ALA 75 GLY 76 ILE 77 GLY 78 GLU 86 GLN 87 LEU 88 LEU 89 GLU 90 ALA 91 ASN 92 ALA 93 ASN 94 THR 95 MET 96 ALA 97 ASP 98 LEU 99 ALA 100 GLU 101 LYS 102 ILE 103 LYS 104 ALA 105 TYR 106 ALA 107 LYS 108 ASP 109 ALA 110 ILE 111 VAL 112 VAL 113 ILE 114 THR 115 THR 116 ASN 117 PRO 118 VAL 119 ASP 120 ALA 121 MET 122 THR 123 TYR 124 VAL 125 MET 126 TYR 127 LYS 128 LYS 129 THR 130 GLY 131 PHE 132 PRO 133 ARG 134 GLU 135 ARG 136 VAL 137 ILE 138 GLY 139 PHE 140 SER 141 GLY 142 ILE 143 LEU 144 ASP 145 SER 146 ALA 147 ARG 148 MET 149 ALA 150 TYR 151 TYR 152 ILE 153 SER 154 GLN 155 LYS 156 LEU 157 GLY 158 VAL 159 SER 160 PHE 161 LYS 162 SER 163 VAL 164 ASN 165 ALA 166 ILE 167 VAL 168 LEU 169 GLY 170 MET 171 HIS 172 GLY 173 GLN 174 LYS 175 MET 176 PHE 177 PRO 178 VAL 179 PRO 180 ARG 181 LEU 182 SER 183 SER 184 VAL 185 GLY 186 GLY 187 VAL 188 PRO 189 LEU 190 GLU 191 HIS 192 LEU 193 MET 194 SER 195 LYS 196 GLU 197 GLU 198 ILE 199 GLU 200 GLU 201 VAL 202 VAL 203 SER 204 GLU 205 THR 206 VAL 207 ASN 208 ALA 209 GLY 210 ALA 211 LYS 212 ILE 213 THR 214 GLU 215 LEU 216 ARG 217 GLY 218 TYR 219 SER 220 SER 221 ASN 222 TYR 223 GLY 224 PRO 225 ALA 226 ALA 227 GLY 228 LEU 229 VAL 230 LEU 231 THR 232 VAL 233 GLU 234 ALA 235 ILE 236 LYS 237 ARG 238 ASP 239 SER 240 LYS 241 ARG 242 ILE 243 TYR 244 PRO 245 TYR 246 SER 247 LEU 248 TYR 249 LEU 250 GLN 251 GLY 252 GLU 253 TYR 254 GLY 255 TYR 256 ASN 257 ASP 258 ILE 259 VAL 260 ALA 261 GLU 262 VAL 263 PRO 264 ALA 265 VAL 266 ILE 267 GLY 268 LYS 269 SER 270 GLY 271 ILE 272 GLU 273 ARG 274 ILE 275 ILE 276 GLU 277 LEU 278 PRO 279 LEU 280 THR 281 GLU 282 ASP 283 GLU 284 LYS 285 ARG 286 LYS 287 PHE 288 ASP 289 GLU 290 ALA 291 VAL 292 GLN 293 ALA 294 VAL 295 LYS 296 LYS 297 LEU 298 VAL 299 GLU 300 THR 301 LEU 302 PRO 303 PRO 304 GLN 305 LEU 306 ARG 307 GLU 308
Unit 2	MET 1 ILE 2 THR 3 ILE 4 LEU 5 GLY 6 ALA 7 GLY 8 LYS 9 VAL 10 GLY 11 MET 12 ALA 13 THR 14 ALA 15 VAL 16 MET 17 LEU 18 MET 19 MET 20 ARG 21 GLY 22 TYR 23 ASP 24 ASP 25 LEU 26 LEU 27 LEU 28 ILE 29 ALA 30 ARG 31 THR 32 PRO 33 GLY 34 LYS 35 PRO 36 GLN 37 GLY 38 GLU 39 ALA 40 LEU 41 ASP 42 LEU 43 ALA 44 HIS 45 ALA 46 ALA 47 ALA 48 GLU 49 LEU 50 GLY 51 VAL 52 ASP 53 ILE 54 ARG 55 ILE 56 SER 57 GLY 58 SER 59 ASN 60 SER 61 TYR 62 GLU 63 ASP 64 MET 65 ARG 66 GLY 67 SER 68 ASP 69 ILE 70 VAL 71 LEU 72 VAL 73 THR 74 ALA 75 GLY 76 ILE 77 GLY 78 LEU 88 LEU 89 GLU 90 ALA 91 ASN 92 ALA 93 ASN 94 THR 95 MET 96 ALA 97 ASP 98 LEU 99 ALA 100 GLU 101 LYS 102 ILE 103 LYS 104 ALA 105 TYR 106 ALA 107 LYS 108 ASP 109 ALA 110 ILE 111 VAL 112 VAL 113 ILE 114 THR 115 THR 116 ASN 117 PRO 118 VAL 119 ASP 120 ALA 121 MET 122 THR 123 TYR 124 VAL 125 MET 126 TYR 127 LYS 128 LYS 129 THR 130 GLY 131 PHE 132 PRO 133 ARG 134 GLU 135 ARG 136 VAL 137 ILE 138 GLY 139 PHE 140 SER 141 GLY 142 ILE 143 LEU 144 ASP 145 SER 146 ALA 147 ARG 148 MET 149 ALA 150 TYR 151 TYR 152 ILE 153 SER 154 GLN 155 LYS 156 LEU 157 GLY 158 VAL 159 SER 160 PHE 161 LYS 162 SER 163 VAL 164 ASN 165 ALA 166 ILE 167 VAL 168 LEU 169 GLY 170 MET 171 HIS 172 GLY 173 GLN 174 LYS 175 MET 176 PHE 177 PRO 178 VAL 179 PRO 180 ARG 181 LEU 182 SER 183 SER 184 VAL 185 GLY 186 GLY 187 VAL 188 PRO 189 LEU 190 GLU 191 HIS 192 LEU 193 MET 194 SER 195 LYS 196 GLU 197 GLU 198 ILE 199 GLU 200 GLU 201 VAL 202 VAL 203 SER 204 GLU 205 THR 206 VAL 207 ASN 208 ALA 209 GLY 210 ALA 211 LYS 212 ILE 213 THR 214 GLU 215 LEU 216 ARG 217 GLY 218 TYR 219 SER 220 SER 221 ASN 222 TYR 223 GLY 224 PRO 225 ALA 226 ALA 227 GLY 228 LEU 229 VAL 230 LEU 231 THR 232 VAL 233 GLU 234 ALA 235 ILE 236 LYS 237 ARG 238 ASP 239 SER 240 LYS 241 ARG 242 ILE 243 TYR 244 PRO 245 TYR 246 SER 247 LEU 248 TYR 249 LEU 250 GLN 251 GLY 252 GLU 253 TYR 254 GLY 255 TYR 256 ASN 257 ASP 258 ILE 259 VAL 260 ALA 261 GLU 262 VAL 263 PRO 264 ALA 265 VAL 266 ILE 267 GLY 268 LYS 269 SER 270 GLY 271 ILE 272 GLU 273 ARG 274 ILE 275 ILE 276 GLU 277 LEU 278 PRO 279 LEU 280 THR 281 GLU 282 ASP 283 GLU 284 LYS 285 ARG 286 LYS 287 PHE 288 ASP 289 GLU 290 ALA 291 VAL 292 GLN 293 ALA 294 VAL 295 LYS 296 LYS 297 LEU 298 VAL 299 GLU 300 THR 301 LEU 302 PRO 303 PRO 304 GLN 305 LEU 306 ARG 307
Unit 3	MET 1 ILE 2 THR 3 ILE 4 LEU 5 GLY 6 ALA 7 GLY 8 LYS 9 VAL 10 GLY 11 MET 12 ALA 13 THR 14 ALA 15 VAL 16 MET 17 LEU 18 MET 19 MET 20 ARG 21 GLY 22 TYR 23 ASP 24 ASP 25 LEU 26 LEU 27 LEU 28 ILE 29 ALA 30 ARG 31 THR 32 PRO 33 GLY 34 LYS 35 PRO 36 GLN 37 GLY 38 GLU 39 ALA 40 LEU 41 ASP 42 LEU 43 ALA 44 HIS 45 ALA 46 ALA 47 ALA 48 GLU 49 LEU 50 GLY 51 VAL 52 ASP 53 ILE 54 ARG 55 ILE 56 SER 57 GLY 58 SER 59 ASN 60 SER 61 TYR 62 GLU 63 ASP 64 MET 65 ARG 66 GLY 67 SER 68 ASP 69 ILE 70 VAL 71 LEU 72 VAL 73 THR 74 ALA 75 GLY 76 ILE 77 GLY 78 ARG 79 LYS 80 PRO 81 GLY 82 MET 83 THR 84 ARG 85 GLU 86 GLN 87 LEU 88 LEU 89 GLU 90 ALA 91 ASN 92 ALA 93 ASN 94 THR 95 MET 96 ALA 97 ASP 98 LEU 99 ALA 100 GLU 101 LYS 102 ILE 103 LYS 104 ALA 105 TYR 106 ALA 107 LYS 108 ASP 109 ALA 110 ILE 111 VAL 112 VAL 113 ILE 114 THR 115 THR 116 ASN 117 PRO 118 VAL 119 ASP 120 ALA 121 MET 122 THR 123 TYR 124 VAL 125 MET 126 TYR 127 LYS 128 LYS 129 THR 130 GLY 131 PHE 132 PRO 133 ARG 134 GLU 135 ARG 136 VAL 137 ILE 138 GLY 139 PHE 140 SER 141 GLY 142 ILE 143 LEU 144 ASP 145 SER 146 ALA 147 ARG 148 MET 149 ALA 150 TYR 151 TYR 152 ILE 153 SER 154 GLN 155 LYS 156 LEU 157 GLY 158 VAL 159 SER 160 PHE 161 LYS 162 SER 163 VAL 164 ASN 165 ALA 166 ILE 167 VAL 168 LEU 169 GLY 170 MET 171 HIS 172 GLY 173 GLN 174 LYS 175 MET 176 PHE 177 PRO 178 VAL 179 PRO 180 ARG 181 LEU 182 SER 183 SER 184 VAL 185 GLY 186 GLY 187 VAL 188 PRO 189 LEU 190 GLU 191 HIS 192 LEU 193 MET 194 SER 195 LYS 196 GLU 197 GLU 198 ILE 199 GLU 200 GLU 201 VAL 202 VAL 203 SER 204 GLU 205 THR 206 VAL 207 ASN 208 ALA 209 GLY 210 ALA 211 LYS 212 ILE 213 THR 214 GLU 215 LEU 216 ARG 217 GLY 218 TYR 219 SER 220 SER 221 ASN 222 TYR 223 GLY 224 PRO 225 ALA 226 ALA 227 GLY 228 LEU 229 VAL 230 LEU 231 THR 232 VAL 233 GLU 234 ALA 235 ILE 236 LYS 237 ARG 238 ASP 239 SER 240 LYS 241 ARG 242 ILE 243 TYR 244 PRO 245 TYR 246 SER 247 LEU 248 TYR 249 LEU 250 GLN 251 GLY 252 GLU 253 TYR 254 GLY 255 TYR 256 ASN 257 ASP 258 ILE 259 VAL 260 ALA 261 GLU 262 VAL 263 PRO 264 ALA 265 VAL 266 ILE 267 GLY 268 LYS 269 SER 270 GLY 271 ILE 272 GLU 273 ARG 274 ILE 275 ILE 276 GLU 277 LEU 278 PRO 279 LEU 280 THR 281 GLU 282 ASP 283 GLU 284 LYS 285 ARG 286 LYS 287 PHE 288 ASP 289 GLU 290 ALA 291 VAL 292 GLN 293 ALA 294 VAL 295 LYS 296 LYS 297 LEU 298 VAL 299 GLU 300 THR 301 LEU 302 PRO 303 PRO 304 GLN 305 LEU 306 ARG 307 GLU 308
Unit 4	MET 1 ILE 2 THR 3 ILE 4 LEU 5 GLY 6 ALA 7 GLY 8 LYS 9 VAL 10 GLY 11 MET 12 ALA 13 THR 14 ALA 15 VAL 16 MET 17 LEU 18 MET 19 MET 20 ARG 21 GLY 22 TYR 23 ASP 24 ASP 25 LEU 26 LEU 27 LEU 28 ILE 29 ALA 30 ARG 31 THR 32 PRO 33 GLY 34 LYS 35 PRO 36 GLN 37 GLY 38 GLU 39 ALA 40 LEU 41 ASP 42 LEU 43 ALA 44 HIS 45 ALA 46 ALA 47 ALA 48 GLU 49 LEU 50 GLY 51 VAL 52 ASP 53 ILE 54 ARG 55 ILE 56 SER 57 GLY 58 SER 59 ASN 60 SER 61 TYR 62 GLU 63 ASP 64 MET 65 ARG 66 GLY 67 SER 68 ASP 69 ILE 70 VAL 71 LEU 72 VAL 73 THR 74 ALA 75 GLY 76 ILE 77 GLY 78 ARG 79 LYS 80 LEU 89 GLU 90 ALA 91 ASN 92 ALA 93 ASN 94 THR 95 MET 96 ALA 97 ASP 98 LEU 99 ALA 100 GLU 101 LYS 102 ILE 103 LYS 104 ALA 105 TYR 106 ALA 107 LYS 108 ASP 109 ALA 110 ILE 111 VAL 112 VAL 113 ILE 114 THR 115 THR 116 ASN 117 PRO 118 VAL 119 ASP 120 ALA 121 MET 122 THR 123 TYR 124 VAL 125 MET 126 TYR 127 LYS 128 LYS 129 THR 130 GLY 131 PHE 132 PRO 133 ARG 134 GLU 135 ARG 136 VAL 137 ILE 138 GLY 139 PHE 140 SER 141 GLY 142 ILE 143 LEU 144 ASP 145 SER 146 ALA 147 ARG 148 MET 149 ALA 150 TYR 151 TYR 152 ILE 153 SER 154 GLN 155 LYS 156 LEU 157 GLY 158 VAL 159 SER 160 PHE 161 LYS 162 SER 163 VAL 164 ASN 165 ALA 166 ILE 167 VAL 168 LEU 169 GLY 170 MET 171 HIS 172 GLY 173 GLN 174 LYS 175 MET 176 PHE 177 PRO 178 VAL 179 PRO 180 ARG 181 LEU 182 SER 183 SER 184 VAL 185 GLY 186 GLY 187 VAL 188 PRO 189 LEU 190 GLU 191 HIS 192 LEU 193 MET 194 SER 195 LYS 196 GLU 197 GLU 198 ILE 199 GLU 200 GLU 201 VAL 202 VAL 203 SER 204 GLU 205 THR 206 VAL 207 ASN 208 ALA 209 GLY 210 ALA 211 LYS 212 ILE 213 THR 214 GLU 215 LEU 216 ARG 217 GLY 218 TYR 219 SER 220 SER 221 ASN 222 TYR 223 GLY 224 PRO 225 ALA 226 ALA 227 GLY 228 LEU 229 VAL 230 LEU 231 THR 232 VAL 233 GLU 234 ALA 235 ILE 236 LYS 237 ARG 238 ASP 239 SER 240 LYS 241 ARG 242 ILE 243 TYR 244 PRO 245 TYR 246 SER 247 LEU 248 TYR 249 LEU 250 GLN 251 GLY 252 GLU 253 TYR 254 GLY 255 TYR 256 ASN 257 ASP 258 ILE 259 VAL 260 ALA 261 GLU 262 VAL 263 PRO 264 ALA 265 VAL 266 ILE 267 GLY 268 LYS 269 SER 270 GLY 271 ILE 272 GLU 273 ARG 274 ILE 275 ILE 276 GLU 277 LEU 278 PRO 279 LEU 280 THR 281 GLU 282 ASP 283 GLU 284 LYS 285 ARG 286 LYS 287 PHE 288 ASP 289 GLU 290 ALA 291 VAL 292 GLN 293 ALA 294 VAL 295 LYS 296 LYS 297 LEU 298 VAL 299 GLU 300 THR 301 LEU 302 PRO 303 PRO 304 GLN 305 LEU 306 ARG 307