2D1P - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF HETEROHEXAMERIC TUSBCD PROTEINS, WHICH ARE CRUCIAL FOR THE TRNA MODIFICATION
• Keywords: TRNA MODIFICATION, SULFUR TRANSFER, STRUCTURAL GENOMICS, TRANSLATION
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2D1P	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HYPOTHETICAL UPF0163 PROTEIN YHEN	A	130	971	0
2	Protein	HYPOTHETICAL UPF0116 PROTEIN YHEM	B	119	920	0
3	Protein	HYPOTHETICAL PROTEIN YHEL	C	95	756	0
4	Protein	HYPOTHETICAL UPF0163 PROTEIN YHEN	D	130	971	0
5	Protein	HYPOTHETICAL UPF0116 PROTEIN YHEM	E	118	912	0
6	Protein	HYPOTHETICAL PROTEIN YHEL	F	95	756	0
7	Protein	HYPOTHETICAL UPF0163 PROTEIN YHEN	G	130	971	0
8	Protein	HYPOTHETICAL UPF0116 PROTEIN YHEM	H	118	912	0
9	Protein	HYPOTHETICAL PROTEIN YHEL	I	95	756	0
10	Ligand	HYPOTHETICAL UPF0116 PROTEIN YHEM	H	1	0	5
11	Water			284	0	284
total				1315	7925	289

Proteins

Unit 1	GLY -1 SER 0 MET 1 ARG 2 PHE 3 ALA 4 ILE 5 VAL 6 VAL 7 THR 8 GLY 9 PRO 10 ALA 11 TYR 12 GLY 13 THR 14 GLN 15 GLN 16 ALA 17 SER 18 SER 19 ALA 20 PHE 21 GLN 22 PHE 23 ALA 24 GLN 25 ALA 26 LEU 27 ILE 28 ALA 29 ASP 30 GLY 31 HIS 32 GLU 33 LEU 34 SER 35 SER 36 VAL 37 PHE 38 PHE 39 TYR 40 ARG 41 GLU 42 GLY 43 VAL 44 TYR 45 ASN 46 ALA 47 ASN 48 GLN 49 LEU 50 THR 51 SER 52 PRO 53 ALA 54 SER 55 ASP 56 GLU 57 PHE 58 ASP 59 LEU 60 VAL 61 ARG 62 ALA 63 TRP 64 GLN 65 GLN 66 LEU 67 ASN 68 ALA 69 GLN 70 HIS 71 GLY 72 VAL 73 ALA 74 LEU 75 ASN 76 ILE 77 CYS 78 VAL 79 ALA 80 ALA 81 ALA 82 LEU 83 ARG 84 ARG 85 GLY 86 VAL 87 VAL 88 ASP 89 GLU 90 THR 91 GLU 92 ALA 93 GLY 94 ARG 95 LEU 96 GLY 97 LEU 98 ALA 99 SER 100 SER 101 ASN 102 LEU 103 GLN 104 GLN 105 GLY 106 PHE 107 THR 108 LEU 109 SER 110 GLY 111 LEU 112 GLY 113 ALA 114 LEU 115 ALA 116 GLU 117 ALA 118 SER 119 LEU 120 THR 121 CYS 122 ASP 123 ARG 124 VAL 125 VAL 126 GLN 127 PHE 128
Unit 2	MET 1 LYS 2 ARG 3 ILE 4 ALA 5 PHE 6 VAL 7 PHE 8 SER 9 THR 10 ALA 11 PRO 12 HIS 13 GLY 14 THR 15 ALA 16 ALA 17 GLY 18 ARG 19 GLU 20 GLY 21 LEU 22 ASP 23 ALA 24 LEU 25 LEU 26 ALA 27 THR 28 SER 29 ALA 30 LEU 31 THR 32 ASP 33 ASP 34 LEU 35 ALA 36 VAL 37 PHE 38 PHE 39 ILE 40 ALA 41 ASP 42 GLY 43 VAL 44 PHE 45 GLN 46 LEU 47 LEU 48 PRO 49 GLY 50 GLN 51 LYS 52 PRO 53 ASP 54 ALA 55 VAL 56 LEU 57 ALA 58 ARG 59 ASP 60 TYR 61 ILE 62 ALA 63 THR 64 PHE 65 LYS 66 LEU 67 LEU 68 GLY 69 LEU 70 TYR 71 ASP 72 ILE 73 GLU 74 GLN 75 CYS 76 TRP 77 VAL 78 CYS 79 ALA 80 ALA 81 SER 82 LEU 83 ARG 84 GLU 85 ARG 86 GLY 87 LEU 88 ASP 89 PRO 90 GLN 91 THR 92 PRO 93 PHE 94 VAL 95 VAL 96 GLU 97 ALA 98 THR 99 PRO 100 LEU 101 GLU 102 ALA 103 ASP 104 ALA 105 LEU 106 ARG 107 ARG 108 GLU 109 LEU 110 ALA 111 ASN 112 TYR 113 ASP 114 VAL 115 ILE 116 LEU 117 ARG 118 PHE 119
Unit 3	MET 1 LEU 2 HIS 3 THR 4 LEU 5 HIS 6 ARG 7 SER 8 PRO 9 TRP 10 LEU 11 THR 12 ASP 13 PHE 14 ALA 15 ALA 16 LEU 17 LEU 18 ARG 19 LEU 20 LEU 21 SER 22 GLU 23 GLY 24 ASP 25 GLU 26 LEU 27 LEU 28 LEU 29 LEU 30 GLN 31 ASP 32 GLY 33 VAL 34 THR 35 ALA 36 ALA 37 VAL 38 ASP 39 GLY 40 ASN 41 ARG 42 TYR 43 LEU 44 GLU 45 SER 46 LEU 47 ARG 48 ASN 49 ALA 50 PRO 51 ILE 52 LYS 53 VAL 54 TYR 55 ALA 56 LEU 57 ASN 58 GLU 59 ASP 60 LEU 61 ILE 62 ALA 63 ARG 64 GLY 65 LEU 66 THR 67 GLY 68 GLN 69 ILE 70 SER 71 ASN 72 ASP 73 ILE 74 ILE 75 LEU 76 ILE 77 ASP 78 TYR 79 THR 80 ASP 81 PHE 82 VAL 83 ARG 84 LEU 85 THR 86 VAL 87 LYS 88 HIS 89 PRO 90 SER 91 GLN 92 MET 93 ALA 94 TRP 95
Unit 4	GLY -1 SER 0 MET 1 ARG 2 PHE 3 ALA 4 ILE 5 VAL 6 VAL 7 THR 8 GLY 9 PRO 10 ALA 11 TYR 12 GLY 13 THR 14 GLN 15 GLN 16 ALA 17 SER 18 SER 19 ALA 20 PHE 21 GLN 22 PHE 23 ALA 24 GLN 25 ALA 26 LEU 27 ILE 28 ALA 29 ASP 30 GLY 31 HIS 32 GLU 33 LEU 34 SER 35 SER 36 VAL 37 PHE 38 PHE 39 TYR 40 ARG 41 GLU 42 GLY 43 VAL 44 TYR 45 ASN 46 ALA 47 ASN 48 GLN 49 LEU 50 THR 51 SER 52 PRO 53 ALA 54 SER 55 ASP 56 GLU 57 PHE 58 ASP 59 LEU 60 VAL 61 ARG 62 ALA 63 TRP 64 GLN 65 GLN 66 LEU 67 ASN 68 ALA 69 GLN 70 HIS 71 GLY 72 VAL 73 ALA 74 LEU 75 ASN 76 ILE 77 CYS 78 VAL 79 ALA 80 ALA 81 ALA 82 LEU 83 ARG 84 ARG 85 GLY 86 VAL 87 VAL 88 ASP 89 GLU 90 THR 91 GLU 92 ALA 93 GLY 94 ARG 95 LEU 96 GLY 97 LEU 98 ALA 99 SER 100 SER 101 ASN 102 LEU 103 GLN 104 GLN 105 GLY 106 PHE 107 THR 108 LEU 109 SER 110 GLY 111 LEU 112 GLY 113 ALA 114 LEU 115 ALA 116 GLU 117 ALA 118 SER 119 LEU 120 THR 121 CYS 122 ASP 123 ARG 124 VAL 125 VAL 126 GLN 127 PHE 128
Unit 5	LYS 2 ARG 3 ILE 4 ALA 5 PHE 6 VAL 7 PHE 8 SER 9 THR 10 ALA 11 PRO 12 HIS 13 GLY 14 THR 15 ALA 16 ALA 17 GLY 18 ARG 19 GLU 20 GLY 21 LEU 22 ASP 23 ALA 24 LEU 25 LEU 26 ALA 27 THR 28 SER 29 ALA 30 LEU 31 THR 32 ASP 33 ASP 34 LEU 35 ALA 36 VAL 37 PHE 38 PHE 39 ILE 40 ALA 41 ASP 42 GLY 43 VAL 44 PHE 45 GLN 46 LEU 47 LEU 48 PRO 49 GLY 50 GLN 51 LYS 52 PRO 53 ASP 54 ALA 55 VAL 56 LEU 57 ALA 58 ARG 59 ASP 60 TYR 61 ILE 62 ALA 63 THR 64 PHE 65 LYS 66 LEU 67 LEU 68 GLY 69 LEU 70 TYR 71 ASP 72 ILE 73 GLU 74 GLN 75 CYS 76 TRP 77 VAL 78 CYS 79 ALA 80 ALA 81 SER 82 LEU 83 ARG 84 GLU 85 ARG 86 GLY 87 LEU 88 ASP 89 PRO 90 GLN 91 THR 92 PRO 93 PHE 94 VAL 95 VAL 96 GLU 97 ALA 98 THR 99 PRO 100 LEU 101 GLU 102 ALA 103 ASP 104 ALA 105 LEU 106 ARG 107 ARG 108 GLU 109 LEU 110 ALA 111 ASN 112 TYR 113 ASP 114 VAL 115 ILE 116 LEU 117 ARG 118 PHE 119
Unit 6	MET 1 LEU 2 HIS 3 THR 4 LEU 5 HIS 6 ARG 7 SER 8 PRO 9 TRP 10 LEU 11 THR 12 ASP 13 PHE 14 ALA 15 ALA 16 LEU 17 LEU 18 ARG 19 LEU 20 LEU 21 SER 22 GLU 23 GLY 24 ASP 25 GLU 26 LEU 27 LEU 28 LEU 29 LEU 30 GLN 31 ASP 32 GLY 33 VAL 34 THR 35 ALA 36 ALA 37 VAL 38 ASP 39 GLY 40 ASN 41 ARG 42 TYR 43 LEU 44 GLU 45 SER 46 LEU 47 ARG 48 ASN 49 ALA 50 PRO 51 ILE 52 LYS 53 VAL 54 TYR 55 ALA 56 LEU 57 ASN 58 GLU 59 ASP 60 LEU 61 ILE 62 ALA 63 ARG 64 GLY 65 LEU 66 THR 67 GLY 68 GLN 69 ILE 70 SER 71 ASN 72 ASP 73 ILE 74 ILE 75 LEU 76 ILE 77 ASP 78 TYR 79 THR 80 ASP 81 PHE 82 VAL 83 ARG 84 LEU 85 THR 86 VAL 87 LYS 88 HIS 89 PRO 90 SER 91 GLN 92 MET 93 ALA 94 TRP 95
Unit 7	GLY -1 SER 0 MET 1 ARG 2 PHE 3 ALA 4 ILE 5 VAL 6 VAL 7 THR 8 GLY 9 PRO 10 ALA 11 TYR 12 GLY 13 THR 14 GLN 15 GLN 16 ALA 17 SER 18 SER 19 ALA 20 PHE 21 GLN 22 PHE 23 ALA 24 GLN 25 ALA 26 LEU 27 ILE 28 ALA 29 ASP 30 GLY 31 HIS 32 GLU 33 LEU 34 SER 35 SER 36 VAL 37 PHE 38 PHE 39 TYR 40 ARG 41 GLU 42 GLY 43 VAL 44 TYR 45 ASN 46 ALA 47 ASN 48 GLN 49 LEU 50 THR 51 SER 52 PRO 53 ALA 54 SER 55 ASP 56 GLU 57 PHE 58 ASP 59 LEU 60 VAL 61 ARG 62 ALA 63 TRP 64 GLN 65 GLN 66 LEU 67 ASN 68 ALA 69 GLN 70 HIS 71 GLY 72 VAL 73 ALA 74 LEU 75 ASN 76 ILE 77 CYS 78 VAL 79 ALA 80 ALA 81 ALA 82 LEU 83 ARG 84 ARG 85 GLY 86 VAL 87 VAL 88 ASP 89 GLU 90 THR 91 GLU 92 ALA 93 GLY 94 ARG 95 LEU 96 GLY 97 LEU 98 ALA 99 SER 100 SER 101 ASN 102 LEU 103 GLN 104 GLN 105 GLY 106 PHE 107 THR 108 LEU 109 SER 110 GLY 111 LEU 112 GLY 113 ALA 114 LEU 115 ALA 116 GLU 117 ALA 118 SER 119 LEU 120 THR 121 CYS 122 ASP 123 ARG 124 VAL 125 VAL 126 GLN 127 PHE 128
Unit 8	LYS 2 ARG 3 ILE 4 ALA 5 PHE 6 VAL 7 PHE 8 SER 9 THR 10 ALA 11 PRO 12 HIS 13 GLY 14 THR 15 ALA 16 ALA 17 GLY 18 ARG 19 GLU 20 GLY 21 LEU 22 ASP 23 ALA 24 LEU 25 LEU 26 ALA 27 THR 28 SER 29 ALA 30 LEU 31 THR 32 ASP 33 ASP 34 LEU 35 ALA 36 VAL 37 PHE 38 PHE 39 ILE 40 ALA 41 ASP 42 GLY 43 VAL 44 PHE 45 GLN 46 LEU 47 LEU 48 PRO 49 GLY 50 GLN 51 LYS 52 PRO 53 ASP 54 ALA 55 VAL 56 LEU 57 ALA 58 ARG 59 ASP 60 TYR 61 ILE 62 ALA 63 THR 64 PHE 65 LYS 66 LEU 67 LEU 68 GLY 69 LEU 70 TYR 71 ASP 72 ILE 73 GLU 74 GLN 75 CYS 76 TRP 77 VAL 78 CYS 79 ALA 80 ALA 81 SER 82 LEU 83 ARG 84 GLU 85 ARG 86 GLY 87 LEU 88 ASP 89 PRO 90 GLN 91 THR 92 PRO 93 PHE 94 VAL 95 VAL 96 GLU 97 ALA 98 THR 99 PRO 100 LEU 101 GLU 102 ALA 103 ASP 104 ALA 105 LEU 106 ARG 107 ARG 108 GLU 109 LEU 110 ALA 111 ASN 112 TYR 113 ASP 114 VAL 115 ILE 116 LEU 117 ARG 118 PHE 119
Unit 9	MET 1 LEU 2 HIS 3 THR 4 LEU 5 HIS 6 ARG 7 SER 8 PRO 9 TRP 10 LEU 11 THR 12 ASP 13 PHE 14 ALA 15 ALA 16 LEU 17 LEU 18 ARG 19 LEU 20 LEU 21 SER 22 GLU 23 GLY 24 ASP 25 GLU 26 LEU 27 LEU 28 LEU 29 LEU 30 GLN 31 ASP 32 GLY 33 VAL 34 THR 35 ALA 36 ALA 37 VAL 38 ASP 39 GLY 40 ASN 41 ARG 42 TYR 43 LEU 44 GLU 45 SER 46 LEU 47 ARG 48 ASN 49 ALA 50 PRO 51 ILE 52 LYS 53 VAL 54 TYR 55 ALA 56 LEU 57 ASN 58 GLU 59 ASP 60 LEU 61 ILE 62 ALA 63 ARG 64 GLY 65 LEU 66 THR 67 GLY 68 GLN 69 ILE 70 SER 71 ASN 72 ASP 73 ILE 74 ILE 75 LEU 76 ILE 77 ASP 78 TYR 79 THR 80 ASP 81 PHE 82 VAL 83 ARG 84 LEU 85 THR 86 VAL 87 LYS 88 HIS 89 PRO 90 SER 91 GLN 92 MET 93 ALA 94 TRP 95

Ligands

Unit 10

SO4 301