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Sequence, Chains, Asymmetric and Biological Units

Title SOLUTION RNA STRUCTURE OF STEM-BULGE-STEM REGION OF THE HIV- 1 DIMERIZATION INITIATION SITE
Keywords DIS, HIV-1, RNA, STRUCTURE, NMR
Experiment NMR
Number of Models  11


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2D17     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 16 520 0
2  RNA    B 14 449 0
total       30 969 0

Nucleic acids
Unit 1 C1 G2 G3 C4 A5 A6 G7 A8 G9 G10 C11 G12 A13 C14 C15 C16
Unit 2 G1 G2 G3 U4 C5 G6 G7 C8 U9 U10 G11 C12 U13 G14

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany