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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS METHIONYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(MET)
Keywords LIGASE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, LIGASE/RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2CSX     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    C 75 1603 0
2  RNA    D 75 1603 0
3  Protein   METHIONYL-TRNA SYNTHETASE  A 464 3905 0
4  Protein   METHIONYL-TRNA SYNTHETASE  B 464 3905 0
5 Water     42 0 42
total       1120 11016 42

Proteins
Unit 3 MET1 THR2 LEU3 MET4 LYS5 LYS6 PHE7 TYR8 VAL9 THR10 THR11 PRO12 ILE13 TYR14 TYR15 VAL16 ASN17 ASP18 VAL19 PRO20 HIS21 LEU22 GLY23 HIS24 ALA25 TYR26 THR27 THR28 ILE29 ALA30 ALA31 ASP32 THR33 ILE34 ALA35 ARG36 TYR37 TYR38 ARG39 LEU40 ARG41 ASP42 TYR43 ASP44 VAL45 PHE46 PHE47 LEU48 THR49 GLY50 THR51 ASP52 GLU53 HIS54 GLY55 LEU56 LYS57 ILE58 GLN59 LYS60 LYS61 ALA62 GLU63 GLU64 LEU65 GLY66 ILE67 SER68 PRO69 LYS70 GLU71 LEU72 VAL73 ASP74 ARG75 ASN76 ALA77 GLU78 ARG79 PHE80 LYS81 LYS82 LEU83 TRP84 GLU85 PHE86 LEU87 LYS88 ILE89 GLU90 TYR91 THR92 LYS93 PHE94 ILE95 ARG96 THR97 THR98 ASP99 PRO100 TYR101 HIS102 VAL103 LYS104 PHE105 VAL106 GLN107 LYS108 VAL109 PHE110 GLU111 GLU112 CYS113 TYR114 LYS115 ARG116 GLY117 ASP118 ILE119 TYR120 LEU121 GLY122 GLU123 TYR124 LYS158 GLU159 PRO160 SER161 TYR162 PHE163 PHE164 ARG165 LEU166 SER167 LYS168 TYR169 GLN170 ASP171 LYS172 LEU173 LEU174 GLU175 LEU176 TYR177 GLU178 LYS179 ASN180 PRO181 GLU182 PHE183 ILE184 GLN185 PRO186 ASP187 TYR188 ARG189 ARG190 ASN191 GLU192 ILE193 ILE194 SER195 PHE196 VAL197 LYS198 GLN199 GLY200 LEU201 LYS202 ASP203 LEU204 SER205 VAL206 THR207 ARG208 PRO209 ARG210 SER211 ARG212 VAL213 LYS214 TRP215 GLY216 ILE217 PRO218 VAL219 PRO220 PHE221 ASP222 PRO223 GLU224 HIS225 THR226 ILE227 TYR228 VAL229 TRP230 PHE231 ASP232 ALA233 LEU234 PHE235 ASN236 TYR237 ILE238 SER239 ALA240 LEU241 GLU242 ASP243 LYS244 VAL245 GLU246 ILE247 TYR248 TRP249 PRO250 ALA251 ASP252 LEU253 HIS254 LEU255 VAL256 GLY257 LYS258 ASP259 ILE260 LEU261 ARG262 PHE263 HIS264 THR265 VAL266 TYR267 TRP268 PRO269 ALA270 PHE271 LEU272 MET273 SER274 LEU275 GLY276 TYR277 GLU278 LEU279 PRO280 LYS281 LYS282 VAL283 PHE284 ALA285 HIS286 GLY287 TRP288 TRP289 THR290 VAL291 GLU292 GLY293 LYS294 LYS295 MET296 SER297 LYS298 THR299 LEU300 GLY301 ASN302 VAL303 VAL304 ASP305 PRO306 TYR307 GLU308 VAL309 VAL310 GLN311 GLU312 TYR313 GLY314 LEU315 ASP316 GLU317 VAL318 ARG319 TYR320 PHE321 LEU322 LEU323 ARG324 GLU325 VAL326 PRO327 PHE328 GLY329 GLN330 ASP331 GLY332 ASP333 PHE334 SER335 LYS336 LYS337 ALA338 ILE339 LEU340 ASN341 ARG342 ILE343 ASN344 GLY345 GLU346 LEU347 ALA348 ASN349 GLU350 ILE351 GLY352 ASN353 LEU354 TYR355 SER356 ARG357 VAL358 VAL359 ASN360 MET361 ALA362 HIS363 LYS364 PHE365 LEU366 GLY367 GLY368 GLU369 VAL370 SER371 GLY372 ALA373 ARG374 ASP375 GLU376 GLU377 TYR378 ALA379 LYS380 ILE381 ALA382 GLN383 GLU384 SER385 ILE386 LYS387 ASN388 TYR389 GLU390 ASN391 TYR392 MET393 GLU394 LYS395 VAL396 ASN397 PHE398 TYR399 LYS400 ALA401 ILE402 GLU403 GLU404 ILE405 LEU406 LYS407 PHE408 THR409 SER410 TYR411 LEU412 ASN413 LYS414 TYR415 VAL416 ASP417 GLU418 LYS419 GLN420 PRO421 TRP422 ALA423 LEU424 ASN425 LYS426 GLU427 ARG428 LYS429 LYS430 GLU431 GLU432 LEU433 GLN434 LYS435 VAL436 LEU437 TYR438 ALA439 LEU440 VAL441 ASP442 GLY443 LEU444 PHE445 VAL446 LEU447 THR448 HIS449 LEU450 LEU451 TYR452 PRO453 ILE454 THR455 PRO456 ASN457 LYS458 MET459 LYS460 GLU461 ALA462 LEU463 GLN464 MET465 LEU466 GLY467 GLU468 LYS469 GLU470 PHE471 LEU472 LYS473 GLU474 LEU475 LYS476 PRO477 TYR478 SER479 LYS480 ASN481 THR482 TYR483 LYS484 LEU485 GLY486 GLU487 ARG488 LYS489 ILE490 LEU491 PHE492 PRO493 LYS494 ARG495 GLU496 GLY497
Unit 4 MET1 THR2 LEU3 MET4 LYS5 LYS6 PHE7 TYR8 VAL9 THR10 THR11 PRO12 ILE13 TYR14 TYR15 VAL16 ASN17 ASP18 VAL19 PRO20 HIS21 LEU22 GLY23 HIS24 ALA25 TYR26 THR27 THR28 ILE29 ALA30 ALA31 ASP32 THR33 ILE34 ALA35 ARG36 TYR37 TYR38 ARG39 LEU40 ARG41 ASP42 TYR43 ASP44 VAL45 PHE46 PHE47 LEU48 THR49 GLY50 THR51 ASP52 GLU53 HIS54 GLY55 LEU56 LYS57 ILE58 GLN59 LYS60 LYS61 ALA62 GLU63 GLU64 LEU65 GLY66 ILE67 SER68 PRO69 LYS70 GLU71 LEU72 VAL73 ASP74 ARG75 ASN76 ALA77 GLU78 ARG79 PHE80 LYS81 LYS82 LEU83 TRP84 GLU85 PHE86 LEU87 LYS88 ILE89 GLU90 TYR91 THR92 LYS93 PHE94 ILE95 ARG96 THR97 THR98 ASP99 PRO100 TYR101 HIS102 VAL103 LYS104 PHE105 VAL106 GLN107 LYS108 VAL109 PHE110 GLU111 GLU112 CYS113 TYR114 LYS115 ARG116 GLY117 ASP118 ILE119 TYR120 LEU121 GLY122 GLU123 TYR124 LYS158 GLU159 PRO160 SER161 TYR162 PHE163 PHE164 ARG165 LEU166 SER167 LYS168 TYR169 GLN170 ASP171 LYS172 LEU173 LEU174 GLU175 LEU176 TYR177 GLU178 LYS179 ASN180 PRO181 GLU182 PHE183 ILE184 GLN185 PRO186 ASP187 TYR188 ARG189 ARG190 ASN191 GLU192 ILE193 ILE194 SER195 PHE196 VAL197 LYS198 GLN199 GLY200 LEU201 LYS202 ASP203 LEU204 SER205 VAL206 THR207 ARG208 PRO209 ARG210 SER211 ARG212 VAL213 LYS214 TRP215 GLY216 ILE217 PRO218 VAL219 PRO220 PHE221 ASP222 PRO223 GLU224 HIS225 THR226 ILE227 TYR228 VAL229 TRP230 PHE231 ASP232 ALA233 LEU234 PHE235 ASN236 TYR237 ILE238 SER239 ALA240 LEU241 GLU242 ASP243 LYS244 VAL245 GLU246 ILE247 TYR248 TRP249 PRO250 ALA251 ASP252 LEU253 HIS254 LEU255 VAL256 GLY257 LYS258 ASP259 ILE260 LEU261 ARG262 PHE263 HIS264 THR265 VAL266 TYR267 TRP268 PRO269 ALA270 PHE271 LEU272 MET273 SER274 LEU275 GLY276 TYR277 GLU278 LEU279 PRO280 LYS281 LYS282 VAL283 PHE284 ALA285 HIS286 GLY287 TRP288 TRP289 THR290 VAL291 GLU292 GLY293 LYS294 LYS295 MET296 SER297 LYS298 THR299 LEU300 GLY301 ASN302 VAL303 VAL304 ASP305 PRO306 TYR307 GLU308 VAL309 VAL310 GLN311 GLU312 TYR313 GLY314 LEU315 ASP316 GLU317 VAL318 ARG319 TYR320 PHE321 LEU322 LEU323 ARG324 GLU325 VAL326 PRO327 PHE328 GLY329 GLN330 ASP331 GLY332 ASP333 PHE334 SER335 LYS336 LYS337 ALA338 ILE339 LEU340 ASN341 ARG342 ILE343 ASN344 GLY345 GLU346 LEU347 ALA348 ASN349 GLU350 ILE351 GLY352 ASN353 LEU354 TYR355 SER356 ARG357 VAL358 VAL359 ASN360 MET361 ALA362 HIS363 LYS364 PHE365 LEU366 GLY367 GLY368 GLU369 VAL370 SER371 GLY372 ALA373 ARG374 ASP375 GLU376 GLU377 TYR378 ALA379 LYS380 ILE381 ALA382 GLN383 GLU384 SER385 ILE386 LYS387 ASN388 TYR389 GLU390 ASN391 TYR392 MET393 GLU394 LYS395 VAL396 ASN397 PHE398 TYR399 LYS400 ALA401 ILE402 GLU403 GLU404 ILE405 LEU406 LYS407 PHE408 THR409 SER410 TYR411 LEU412 ASN413 LYS414 TYR415 VAL416 ASP417 GLU418 LYS419 GLN420 PRO421 TRP422 ALA423 LEU424 ASN425 LYS426 GLU427 ARG428 LYS429 LYS430 GLU431 GLU432 LEU433 GLN434 LYS435 VAL436 LEU437 TYR438 ALA439 LEU440 VAL441 ASP442 GLY443 LEU444 PHE445 VAL446 LEU447 THR448 HIS449 LEU450 LEU451 TYR452 PRO453 ILE454 THR455 PRO456 ASN457 LYS458 MET459 LYS460 GLU461 ALA462 LEU463 GLN464 MET465 LEU466 GLY467 GLU468 LYS469 GLU470 PHE471 LEU472 LYS473 GLU474 LEU475 LYS476 PRO477 TYR478 SER479 LYS480 ASN481 THR482 TYR483 LYS484 LEU485 GLY486 GLU487 ARG488 LYS489 ILE490 LEU491 PHE492 PRO493 LYS494 ARG495 GLU496 GLY497

Nucleic acids
Unit 1 G1 G2 C3 G4 G5 C6 G7 U8 A9 G10 C11 U12 C13 A14 G15 C16 U17 G18 G19 U20 C21 A21A G22 A23 G24 C25 G26 G27 G28 G29 A30 U31 C32 U33 C34 A35 U36 A37 A38 G39 U40 C41 C42 C43 A44 G45 G46 U47 C48 G49 G50 A51 G52 G53 U54 U55 C56 G57 A58 G59 U60 C61 C62 U63 C64 C65 C66 G67 C68 C69 G70 C71 C72 A73 C74
Unit 2 G1 G2 C3 G4 G5 C6 G7 U8 A9 G10 C11 U12 C13 A14 G15 C16 U17 G18 G19 U20 C21 A21A G22 A23 G24 C25 G26 G27 G28 G29 A30 U31 C32 U33 C34 A35 U36 A37 A38 G39 U40 C41 C42 C43 A44 G45 G46 U47 C48 G49 G50 A51 G52 G53 U54 U55 C56 G57 A58 G59 U60 C61 C62 U63 C64 C65 C66 G67 C68 C69 G70 C71 C72 A73 C74

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany