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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN PHOSPHORIBOSYLPYROPHOSPHATE SYNTH ASSOCIATED PROTEIN 39 (PAP39)
Keywords NUCLEOTIDE BIOSYNTHESIS, SYNTHETASE, LIGASE, REGULATORY PROT
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2C4K     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE-ASSOCIATE 1  A 305 2376 0
2  Protein   PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE-ASSOCIATE 1  B 305 2376 0
3  Protein   PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE-ASSOCIATE 1  C 305 2376 0
4  Protein   PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE-ASSOCIATE 1  D 305 2376 0
5  Protein   PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE-ASSOCIATE 1  E 305 2376 0
6  Protein   PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE-ASSOCIATE 1  F 305 2376 0
7  Ligand   PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE-ASSOCIATE 1  B 3 0 21
8  Ligand   PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE-ASSOCIATE 1  C 1 0 5
9  Ligand   PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE-ASSOCIATE 1  D 1 0 5
10  Ligand   PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE-ASSOCIATE 1  E 2 0 10
11  Ligand   PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE-ASSOCIATE 1  F 1 0 5
12 Water     76 0 76
total       1914 14256 122

Proteins
Unit 1 GLY7 TYR8 ARG9 VAL10 PHE11 SER12 ALA13 ASN14 SER15 THR16 ALA17 ALA18 CYS19 THR20 GLU21 LEU22 ALA23 LYS24 ARG25 ILE26 THR27 GLU28 ARG29 LEU30 GLY31 ALA32 GLU33 LEU34 GLY35 LYS36 SER37 VAL38 VAL39 TYR40 GLN41 GLU42 THR43 ASN44 GLY45 GLU46 THR47 ARG48 VAL49 GLU50 ILE51 LYS52 GLU53 SER54 VAL55 ARG56 GLY57 GLN58 ASP59 ILE60 PHE61 ILE62 ILE63 GLN64 THR65 ILE66 PRO67 ARG68 ASP69 VAL70 ASN71 THR72 ALA73 VAL74 MET75 GLU76 LEU77 LEU78 ILE79 MET80 ALA81 TYR82 ALA83 LEU84 LYS85 THR86 ALA87 CYS88 ALA89 ARG90 ASN91 ILE92 ILE93 GLY94 VAL95 ILE96 PRO97 TYR98 PHE99 PRO100 TYR101 SER102 LYS103 GLN104 SER105 LYS106 MET107 ARG108 LYS109 ARG110 GLY111 SER112 ILE113 VAL114 CYS115 LYS116 LEU117 LEU118 ALA119 SER120 MET121 LEU122 ALA123 LYS124 ALA125 GLY126 LEU127 THR128 HIS129 ILE130 ILE131 THR132 MET133 ASP134 LEU135 HIS136 GLN137 LYS138 GLU139 ILE140 GLN141 GLY142 PHE143 PHE144 SER145 PHE146 PRO147 VAL148 ASP149 ASN150 LEU151 ARG152 ALA153 SER154 PRO155 PHE156 LEU157 LEU158 GLN159 TYR160 ILE161 GLN162 GLU163 GLU164 ILE165 PRO166 ASN167 TYR168 ARG169 ASN170 ALA171 VAL172 ILE173 VAL174 ALA175 LYS176 SER177 PRO178 ASP179 ALA180 ALA181 LYS182 ARG183 ALA184 GLN185 SER186 TYR187 ALA188 GLU189 ARG190 LEU191 ARG192 LEU193 GLY194 LEU195 ALA196 VAL197 ILE198 HIS199 PRO239 PRO240 ILE241 THR242 VAL243 VAL244 GLY245 ASP246 VAL247 GLY248 GLY249 ARG250 ILE251 ALA252 ILE253 ILE254 VAL255 ASP256 ASP257 ILE258 ILE259 ASP260 ASP261 VAL262 GLU263 SER264 PHE265 VAL266 ALA267 ALA268 ALA269 GLU270 ILE271 LEU272 LYS273 GLU274 ARG275 GLY276 ALA277 TYR278 LYS279 ILE280 TYR281 VAL282 MET283 ALA284 THR285 HIS286 GLY287 ILE288 LEU289 SER290 ALA291 GLU292 ALA293 PRO294 ARG295 LEU296 ILE297 GLU298 GLU299 SER300 SER301 VAL302 ASP303 GLU304 VAL305 VAL306 VAL307 THR308 ASN309 THR310 VAL311 PRO312 HIS313 GLU314 VAL315 GLN316 LYS317 LEU318 GLN319 CYS320 PRO321 LYS322 ILE323 LYS324 THR325 VAL326 ASP327 ILE328 SER329 LEU330 ILE331 LEU332 SER333 GLU334 ALA335 ILE336 ARG337 ARG338 ILE339 HIS340 ASN341 GLY342 GLU343 SER344 MET345 ALA346 TYR347 LEU348 PHE349 ARG350
Unit 2 GLY7 TYR8 ARG9 VAL10 PHE11 SER12 ALA13 ASN14 SER15 THR16 ALA17 ALA18 CYS19 THR20 GLU21 LEU22 ALA23 LYS24 ARG25 ILE26 THR27 GLU28 ARG29 LEU30 GLY31 ALA32 GLU33 LEU34 GLY35 LYS36 SER37 VAL38 VAL39 TYR40 GLN41 GLU42 THR43 ASN44 GLY45 GLU46 THR47 ARG48 VAL49 GLU50 ILE51 LYS52 GLU53 SER54 VAL55 ARG56 GLY57 GLN58 ASP59 ILE60 PHE61 ILE62 ILE63 GLN64 THR65 ILE66 PRO67 ARG68 ASP69 VAL70 ASN71 THR72 ALA73 VAL74 MET75 GLU76 LEU77 LEU78 ILE79 MET80 ALA81 TYR82 ALA83 LEU84 LYS85 THR86 ALA87 CYS88 ALA89 ARG90 ASN91 ILE92 ILE93 GLY94 VAL95 ILE96 PRO97 TYR98 PHE99 PRO100 TYR101 SER102 LYS103 GLN104 SER105 LYS106 MET107 ARG108 LYS109 ARG110 GLY111 SER112 ILE113 VAL114 CYS115 LYS116 LEU117 LEU118 ALA119 SER120 MET121 LEU122 ALA123 LYS124 ALA125 GLY126 LEU127 THR128 HIS129 ILE130 ILE131 THR132 MET133 ASP134 LEU135 HIS136 GLN137 LYS138 GLU139 ILE140 GLN141 GLY142 PHE143 PHE144 SER145 PHE146 PRO147 VAL148 ASP149 ASN150 LEU151 ARG152 ALA153 SER154 PRO155 PHE156 LEU157 LEU158 GLN159 TYR160 ILE161 GLN162 GLU163 GLU164 ILE165 PRO166 ASN167 TYR168 ARG169 ASN170 ALA171 VAL172 ILE173 VAL174 ALA175 LYS176 SER177 PRO178 ASP179 ALA180 ALA181 LYS182 ARG183 ALA184 GLN185 SER186 TYR187 ALA188 GLU189 ARG190 LEU191 ARG192 LEU193 GLY194 LEU195 ALA196 VAL197 ILE198 HIS199 PRO239 PRO240 ILE241 THR242 VAL243 VAL244 GLY245 ASP246 VAL247 GLY248 GLY249 ARG250 ILE251 ALA252 ILE253 ILE254 VAL255 ASP256 ASP257 ILE258 ILE259 ASP260 ASP261 VAL262 GLU263 SER264 PHE265 VAL266 ALA267 ALA268 ALA269 GLU270 ILE271 LEU272 LYS273 GLU274 ARG275 GLY276 ALA277 TYR278 LYS279 ILE280 TYR281 VAL282 MET283 ALA284 THR285 HIS286 GLY287 ILE288 LEU289 SER290 ALA291 GLU292 ALA293 PRO294 ARG295 LEU296 ILE297 GLU298 GLU299 SER300 SER301 VAL302 ASP303 GLU304 VAL305 VAL306 VAL307 THR308 ASN309 THR310 VAL311 PRO312 HIS313 GLU314 VAL315 GLN316 LYS317 LEU318 GLN319 CYS320 PRO321 LYS322 ILE323 LYS324 THR325 VAL326 ASP327 ILE328 SER329 LEU330 ILE331 LEU332 SER333 GLU334 ALA335 ILE336 ARG337 ARG338 ILE339 HIS340 ASN341 GLY342 GLU343 SER344 MET345 ALA346 TYR347 LEU348 PHE349 ARG350
Unit 3 GLY7 TYR8 ARG9 VAL10 PHE11 SER12 ALA13 ASN14 SER15 THR16 ALA17 ALA18 CYS19 THR20 GLU21 LEU22 ALA23 LYS24 ARG25 ILE26 THR27 GLU28 ARG29 LEU30 GLY31 ALA32 GLU33 LEU34 GLY35 LYS36 SER37 VAL38 VAL39 TYR40 GLN41 GLU42 THR43 ASN44 GLY45 GLU46 THR47 ARG48 VAL49 GLU50 ILE51 LYS52 GLU53 SER54 VAL55 ARG56 GLY57 GLN58 ASP59 ILE60 PHE61 ILE62 ILE63 GLN64 THR65 ILE66 PRO67 ARG68 ASP69 VAL70 ASN71 THR72 ALA73 VAL74 MET75 GLU76 LEU77 LEU78 ILE79 MET80 ALA81 TYR82 ALA83 LEU84 LYS85 THR86 ALA87 CYS88 ALA89 ARG90 ASN91 ILE92 ILE93 GLY94 VAL95 ILE96 PRO97 TYR98 PHE99 PRO100 TYR101 SER102 LYS103 GLN104 SER105 LYS106 MET107 ARG108 LYS109 ARG110 GLY111 SER112 ILE113 VAL114 CYS115 LYS116 LEU117 LEU118 ALA119 SER120 MET121 LEU122 ALA123 LYS124 ALA125 GLY126 LEU127 THR128 HIS129 ILE130 ILE131 THR132 MET133 ASP134 LEU135 HIS136 GLN137 LYS138 GLU139 ILE140 GLN141 GLY142 PHE143 PHE144 SER145 PHE146 PRO147 VAL148 ASP149 ASN150 LEU151 ARG152 ALA153 SER154 PRO155 PHE156 LEU157 LEU158 GLN159 TYR160 ILE161 GLN162 GLU163 GLU164 ILE165 PRO166 ASN167 TYR168 ARG169 ASN170 ALA171 VAL172 ILE173 VAL174 ALA175 LYS176 SER177 PRO178 ASP179 ALA180 ALA181 LYS182 ARG183 ALA184 GLN185 SER186 TYR187 ALA188 GLU189 ARG190 LEU191 ARG192 LEU193 GLY194 LEU195 ALA196 VAL197 ILE198 HIS199 PRO239 PRO240 ILE241 THR242 VAL243 VAL244 GLY245 ASP246 VAL247 GLY248 GLY249 ARG250 ILE251 ALA252 ILE253 ILE254 VAL255 ASP256 ASP257 ILE258 ILE259 ASP260 ASP261 VAL262 GLU263 SER264 PHE265 VAL266 ALA267 ALA268 ALA269 GLU270 ILE271 LEU272 LYS273 GLU274 ARG275 GLY276 ALA277 TYR278 LYS279 ILE280 TYR281 VAL282 MET283 ALA284 THR285 HIS286 GLY287 ILE288 LEU289 SER290 ALA291 GLU292 ALA293 PRO294 ARG295 LEU296 ILE297 GLU298 GLU299 SER300 SER301 VAL302 ASP303 GLU304 VAL305 VAL306 VAL307 THR308 ASN309 THR310 VAL311 PRO312 HIS313 GLU314 VAL315 GLN316 LYS317 LEU318 GLN319 CYS320 PRO321 LYS322 ILE323 LYS324 THR325 VAL326 ASP327 ILE328 SER329 LEU330 ILE331 LEU332 SER333 GLU334 ALA335 ILE336 ARG337 ARG338 ILE339 HIS340 ASN341 GLY342 GLU343 SER344 MET345 ALA346 TYR347 LEU348 PHE349 ARG350
Unit 4 GLY7 TYR8 ARG9 VAL10 PHE11 SER12 ALA13 ASN14 SER15 THR16 ALA17 ALA18 CYS19 THR20 GLU21 LEU22 ALA23 LYS24 ARG25 ILE26 THR27 GLU28 ARG29 LEU30 GLY31 ALA32 GLU33 LEU34 GLY35 LYS36 SER37 VAL38 VAL39 TYR40 GLN41 GLU42 THR43 ASN44 GLY45 GLU46 THR47 ARG48 VAL49 GLU50 ILE51 LYS52 GLU53 SER54 VAL55 ARG56 GLY57 GLN58 ASP59 ILE60 PHE61 ILE62 ILE63 GLN64 THR65 ILE66 PRO67 ARG68 ASP69 VAL70 ASN71 THR72 ALA73 VAL74 MET75 GLU76 LEU77 LEU78 ILE79 MET80 ALA81 TYR82 ALA83 LEU84 LYS85 THR86 ALA87 CYS88 ALA89 ARG90 ASN91 ILE92 ILE93 GLY94 VAL95 ILE96 PRO97 TYR98 PHE99 PRO100 TYR101 SER102 LYS103 GLN104 SER105 LYS106 MET107 ARG108 LYS109 ARG110 GLY111 SER112 ILE113 VAL114 CYS115 LYS116 LEU117 LEU118 ALA119 SER120 MET121 LEU122 ALA123 LYS124 ALA125 GLY126 LEU127 THR128 HIS129 ILE130 ILE131 THR132 MET133 ASP134 LEU135 HIS136 GLN137 LYS138 GLU139 ILE140 GLN141 GLY142 PHE143 PHE144 SER145 PHE146 PRO147 VAL148 ASP149 ASN150 LEU151 ARG152 ALA153 SER154 PRO155 PHE156 LEU157 LEU158 GLN159 TYR160 ILE161 GLN162 GLU163 GLU164 ILE165 PRO166 ASN167 TYR168 ARG169 ASN170 ALA171 VAL172 ILE173 VAL174 ALA175 LYS176 SER177 PRO178 ASP179 ALA180 ALA181 LYS182 ARG183 ALA184 GLN185 SER186 TYR187 ALA188 GLU189 ARG190 LEU191 ARG192 LEU193 GLY194 LEU195 ALA196 VAL197 ILE198 HIS199 PRO239 PRO240 ILE241 THR242 VAL243 VAL244 GLY245 ASP246 VAL247 GLY248 GLY249 ARG250 ILE251 ALA252 ILE253 ILE254 VAL255 ASP256 ASP257 ILE258 ILE259 ASP260 ASP261 VAL262 GLU263 SER264 PHE265 VAL266 ALA267 ALA268 ALA269 GLU270 ILE271 LEU272 LYS273 GLU274 ARG275 GLY276 ALA277 TYR278 LYS279 ILE280 TYR281 VAL282 MET283 ALA284 THR285 HIS286 GLY287 ILE288 LEU289 SER290 ALA291 GLU292 ALA293 PRO294 ARG295 LEU296 ILE297 GLU298 GLU299 SER300 SER301 VAL302 ASP303 GLU304 VAL305 VAL306 VAL307 THR308 ASN309 THR310 VAL311 PRO312 HIS313 GLU314 VAL315 GLN316 LYS317 LEU318 GLN319 CYS320 PRO321 LYS322 ILE323 LYS324 THR325 VAL326 ASP327 ILE328 SER329 LEU330 ILE331 LEU332 SER333 GLU334 ALA335 ILE336 ARG337 ARG338 ILE339 HIS340 ASN341 GLY342 GLU343 SER344 MET345 ALA346 TYR347 LEU348 PHE349 ARG350
Unit 5 GLY7 TYR8 ARG9 VAL10 PHE11 SER12 ALA13 ASN14 SER15 THR16 ALA17 ALA18 CYS19 THR20 GLU21 LEU22 ALA23 LYS24 ARG25 ILE26 THR27 GLU28 ARG29 LEU30 GLY31 ALA32 GLU33 LEU34 GLY35 LYS36 SER37 VAL38 VAL39 TYR40 GLN41 GLU42 THR43 ASN44 GLY45 GLU46 THR47 ARG48 VAL49 GLU50 ILE51 LYS52 GLU53 SER54 VAL55 ARG56 GLY57 GLN58 ASP59 ILE60 PHE61 ILE62 ILE63 GLN64 THR65 ILE66 PRO67 ARG68 ASP69 VAL70 ASN71 THR72 ALA73 VAL74 MET75 GLU76 LEU77 LEU78 ILE79 MET80 ALA81 TYR82 ALA83 LEU84 LYS85 THR86 ALA87 CYS88 ALA89 ARG90 ASN91 ILE92 ILE93 GLY94 VAL95 ILE96 PRO97 TYR98 PHE99 PRO100 TYR101 SER102 LYS103 GLN104 SER105 LYS106 MET107 ARG108 LYS109 ARG110 GLY111 SER112 ILE113 VAL114 CYS115 LYS116 LEU117 LEU118 ALA119 SER120 MET121 LEU122 ALA123 LYS124 ALA125 GLY126 LEU127 THR128 HIS129 ILE130 ILE131 THR132 MET133 ASP134 LEU135 HIS136 GLN137 LYS138 GLU139 ILE140 GLN141 GLY142 PHE143 PHE144 SER145 PHE146 PRO147 VAL148 ASP149 ASN150 LEU151 ARG152 ALA153 SER154 PRO155 PHE156 LEU157 LEU158 GLN159 TYR160 ILE161 GLN162 GLU163 GLU164 ILE165 PRO166 ASN167 TYR168 ARG169 ASN170 ALA171 VAL172 ILE173 VAL174 ALA175 LYS176 SER177 PRO178 ASP179 ALA180 ALA181 LYS182 ARG183 ALA184 GLN185 SER186 TYR187 ALA188 GLU189 ARG190 LEU191 ARG192 LEU193 GLY194 LEU195 ALA196 VAL197 ILE198 HIS199 PRO239 PRO240 ILE241 THR242 VAL243 VAL244 GLY245 ASP246 VAL247 GLY248 GLY249 ARG250 ILE251 ALA252 ILE253 ILE254 VAL255 ASP256 ASP257 ILE258 ILE259 ASP260 ASP261 VAL262 GLU263 SER264 PHE265 VAL266 ALA267 ALA268 ALA269 GLU270 ILE271 LEU272 LYS273 GLU274 ARG275 GLY276 ALA277 TYR278 LYS279 ILE280 TYR281 VAL282 MET283 ALA284 THR285 HIS286 GLY287 ILE288 LEU289 SER290 ALA291 GLU292 ALA293 PRO294 ARG295 LEU296 ILE297 GLU298 GLU299 SER300 SER301 VAL302 ASP303 GLU304 VAL305 VAL306 VAL307 THR308 ASN309 THR310 VAL311 PRO312 HIS313 GLU314 VAL315 GLN316 LYS317 LEU318 GLN319 CYS320 PRO321 LYS322 ILE323 LYS324 THR325 VAL326 ASP327 ILE328 SER329 LEU330 ILE331 LEU332 SER333 GLU334 ALA335 ILE336 ARG337 ARG338 ILE339 HIS340 ASN341 GLY342 GLU343 SER344 MET345 ALA346 TYR347 LEU348 PHE349 ARG350
Unit 6 GLY7 TYR8 ARG9 VAL10 PHE11 SER12 ALA13 ASN14 SER15 THR16 ALA17 ALA18 CYS19 THR20 GLU21 LEU22 ALA23 LYS24 ARG25 ILE26 THR27 GLU28 ARG29 LEU30 GLY31 ALA32 GLU33 LEU34 GLY35 LYS36 SER37 VAL38 VAL39 TYR40 GLN41 GLU42 THR43 ASN44 GLY45 GLU46 THR47 ARG48 VAL49 GLU50 ILE51 LYS52 GLU53 SER54 VAL55 ARG56 GLY57 GLN58 ASP59 ILE60 PHE61 ILE62 ILE63 GLN64 THR65 ILE66 PRO67 ARG68 ASP69 VAL70 ASN71 THR72 ALA73 VAL74 MET75 GLU76 LEU77 LEU78 ILE79 MET80 ALA81 TYR82 ALA83 LEU84 LYS85 THR86 ALA87 CYS88 ALA89 ARG90 ASN91 ILE92 ILE93 GLY94 VAL95 ILE96 PRO97 TYR98 PHE99 PRO100 TYR101 SER102 LYS103 GLN104 SER105 LYS106 MET107 ARG108 LYS109 ARG110 GLY111 SER112 ILE113 VAL114 CYS115 LYS116 LEU117 LEU118 ALA119 SER120 MET121 LEU122 ALA123 LYS124 ALA125 GLY126 LEU127 THR128 HIS129 ILE130 ILE131 THR132 MET133 ASP134 LEU135 HIS136 GLN137 LYS138 GLU139 ILE140 GLN141 GLY142 PHE143 PHE144 SER145 PHE146 PRO147 VAL148 ASP149 ASN150 LEU151 ARG152 ALA153 SER154 PRO155 PHE156 LEU157 LEU158 GLN159 TYR160 ILE161 GLN162 GLU163 GLU164 ILE165 PRO166 ASN167 TYR168 ARG169 ASN170 ALA171 VAL172 ILE173 VAL174 ALA175 LYS176 SER177 PRO178 ASP179 ALA180 ALA181 LYS182 ARG183 ALA184 GLN185 SER186 TYR187 ALA188 GLU189 ARG190 LEU191 ARG192 LEU193 GLY194 LEU195 ALA196 VAL197 ILE198 HIS199 PRO239 PRO240 ILE241 THR242 VAL243 VAL244 GLY245 ASP246 VAL247 GLY248 GLY249 ARG250 ILE251 ALA252 ILE253 ILE254 VAL255 ASP256 ASP257 ILE258 ILE259 ASP260 ASP261 VAL262 GLU263 SER264 PHE265 VAL266 ALA267 ALA268 ALA269 GLU270 ILE271 LEU272 LYS273 GLU274 ARG275 GLY276 ALA277 TYR278 LYS279 ILE280 TYR281 VAL282 MET283 ALA284 THR285 HIS286 GLY287 ILE288 LEU289 SER290 ALA291 GLU292 ALA293 PRO294 ARG295 LEU296 ILE297 GLU298 GLU299 SER300 SER301 VAL302 ASP303 GLU304 VAL305 VAL306 VAL307 THR308 ASN309 THR310 VAL311 PRO312 HIS313 GLU314 VAL315 GLN316 LYS317 LEU318 GLN319 CYS320 PRO321 LYS322 ILE323 LYS324 THR325 VAL326 ASP327 ILE328 SER329 LEU330 ILE331 LEU332 SER333 GLU334 ALA335 ILE336 ARG337 ARG338 ILE339 HIS340 ASN341 GLY342 GLU343 SER344 MET345 ALA346 TYR347 LEU348 PHE349 ARG350

Ligands
Unit 7 SO41351 SO41352 TAM1353
Unit 8 SO41351
Unit 9 SO41351
Unit 10 SO41351 SO41352
Unit 11 SO41351

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany