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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL AND KINETIC BASIS FOR HEIGHTENED IMMUNOGENICITY OF T CELL VACCINES
Keywords IMMUNE SYSTEM/RECEPTOR, IMMUNE SYSTEM/RECEPTOR/COMPLEX, TCR, MHC, IMMUNODOMINANCE, FLU, COMPLEX, PEPTIDE, TRANSMEMBRANE, GLYCOPROTEIN, SIGNAL, POLYMORPHISM, T-CELL, RECEPTOR, SUPERAGONIST PEPTIDE T-CELL VACCINES
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2BNQ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HLA CLASS I HISTOCOMPATIBILITY ANTIGEN  A 276 2254 0
2  Protein   BETA-2-MICROGLOBULIN  B 100 837 0
3  Protein   SYNTHETIC PEPTIDE  C 9 76 0
4  Protein   T-CELL RECEPTOR ALPHA CHAIN V REGION  D 203 1557 0
5  Protein   T-CELL RECEPTOR BETA CHAIN C REGION  E 241 1902 0
6 Water     527 0 527
total       1356 6626 527

Proteins
Unit 1 GLY1 SER2 HIS3 SER4 MET5 ARG6 TYR7 PHE8 PHE9 THR10 SER11 VAL12 SER13 ARG14 PRO15 GLY16 ARG17 GLY18 GLU19 PRO20 ARG21 PHE22 ILE23 ALA24 VAL25 GLY26 TYR27 VAL28 ASP29 ASP30 THR31 GLN32 PHE33 VAL34 ARG35 PHE36 ASP37 SER38 ASP39 ALA40 ALA41 SER42 GLN43 ARG44 MET45 GLU46 PRO47 ARG48 ALA49 PRO50 TRP51 ILE52 GLU53 GLN54 GLU55 GLY56 PRO57 GLU58 TYR59 TRP60 ASP61 GLY62 GLU63 THR64 ARG65 LYS66 VAL67 LYS68 ALA69 HIS70 SER71 GLN72 THR73 HIS74 ARG75 VAL76 ASP77 LEU78 GLY79 THR80 LEU81 ARG82 GLY83 TYR84 TYR85 ASN86 GLN87 SER88 GLU89 ALA90 GLY91 SER92 HIS93 THR94 VAL95 GLN96 ARG97 MET98 TYR99 GLY100 CYS101 ASP102 VAL103 GLY104 SER105 ASP106 TRP107 ARG108 PHE109 LEU110 ARG111 GLY112 TYR113 HIS114 GLN115 TYR116 ALA117 TYR118 ASP119 GLY120 LYS121 ASP122 TYR123 ILE124 ALA125 LEU126 LYS127 GLU128 ASP129 LEU130 ARG131 SER132 TRP133 THR134 ALA135 ALA136 ASP137 MET138 ALA139 ALA140 GLN141 THR142 THR143 LYS144 HIS145 LYS146 TRP147 GLU148 ALA149 ALA150 HIS151 VAL152 ALA153 GLU154 GLN155 LEU156 ARG157 ALA158 TYR159 LEU160 GLU161 GLY162 THR163 CYS164 VAL165 GLU166 TRP167 LEU168 ARG169 ARG170 TYR171 LEU172 GLU173 ASN174 GLY175 LYS176 GLU177 THR178 LEU179 GLN180 ARG181 THR182 ASP183 ALA184 PRO185 LYS186 THR187 HIS188 MET189 THR190 HIS191 HIS192 ALA193 VAL194 SER195 ASP196 HIS197 GLU198 ALA199 THR200 LEU201 ARG202 CYS203 TRP204 ALA205 LEU206 SER207 PHE208 TYR209 PRO210 ALA211 GLU212 ILE213 THR214 LEU215 THR216 TRP217 GLN218 ARG219 ASP220 GLY221 GLU222 ASP223 GLN224 THR225 GLN226 ASP227 THR228 GLU229 LEU230 VAL231 GLU232 THR233 ARG234 PRO235 ALA236 GLY237 ASP238 GLY239 THR240 PHE241 GLN242 LYS243 TRP244 ALA245 ALA246 VAL247 VAL248 VAL249 PRO250 SER251 GLY252 GLN253 GLU254 GLN255 ARG256 TYR257 THR258 CYS259 HIS260 VAL261 GLN262 HIS263 GLU264 GLY265 LEU266 PRO267 LYS268 PRO269 LEU270 THR271 LEU272 ARG273 TRP274 GLU275 PRO276
Unit 2 MET0 ILE1 GLN2 ARG3 THR4 PRO5 LYS6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 ALA15 GLU16 ASN17 GLY18 LYS19 SER20 ASN21 PHE22 LEU23 ASN24 CYS25 TYR26 VAL27 SER28 GLY29 PHE30 HIS31 PRO32 SER33 ASP34 ILE35 GLU36 VAL37 ASP38 LEU39 LEU40 LYS41 ASN42 GLY43 GLU44 ARG45 ILE46 GLU47 LYS48 VAL49 GLU50 HIS51 SER52 ASP53 LEU54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 LEU64 LEU65 TYR66 TYR67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 LYS75 ASP76 GLU77 TYR78 ALA79 CYS80 ARG81 VAL82 ASN83 HIS84 VAL85 THR86 LEU87 SER88 GLN89 PRO90 LYS91 ILE92 VAL93 LYS94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 3 SER1 LEU2 LEU3 MET4 TRP5 ILE6 THR7 GLN8 VAL9
Unit 4 GLN2 GLU3 VAL4 THR5 GLN6 ILE7 PRO8 ALA9 ALA10 LEU11 SER12 VAL13 PRO14 GLU15 GLY16 GLU17 ASN18 LEU19 VAL20 LEU21 ASN22 CYS23 SER24 PHE25 THR26 ASP27 SER28 ALA29 ILE30 TYR31 ASN32 LEU33 GLN34 TRP35 PHE36 ARG37 GLN38 ASP39 PRO40 GLY41 LYS42 GLY43 LEU44 THR45 SER46 LEU47 LEU48 LEU49 ILE50 GLN51 SER52 SER53 GLN54 ARG55 GLU56 GLN57 THR58 SER59 GLY60 ARG61 LEU62 ASN63 ALA64 SER65 LEU66 ASP67 LYS68 SER69 SER70 GLY71 ARG72 SER73 THR74 LEU75 TYR76 ILE77 ALA78 ALA79 SER80 GLN81 PRO82 GLY83 ASP84 SER85 ALA86 THR87 TYR88 LEU89 CYS90 ALA91 VAL92 ARG93 PRO94 THR95 SER96 GLY97 GLY98 SER99 TYR100 ILE101 PRO102 THR103 PHE104 GLY105 ARG106 GLY107 THR108 SER109 LEU110 ILE111 VAL112 HIS113 PRO114 TYR115 ILE116 GLN117 ASN118 PRO119 ASP120 PRO121 ALA122 VAL123 TYR124 GLN125 LEU126 ARG127 ASP128 SER129 LYS130 SER131 SER132 ASP133 LYS134 SER135 VAL136 CYS137 LEU138 PHE139 THR140 ASP141 PHE142 ASP143 SER144 GLN145 THR146 ASN147 VAL148 SER149 GLN150 SER151 LYS152 ASP153 SER154 ASP155 VAL156 TYR157 ILE158 THR159 ASP160 LYS161 CYS162 VAL163 LEU164 ASP165 MET166 ARG167 SER168 MET169 ASP170 PHE171 LYS172 SER173 ASN174 SER175 ALA176 VAL177 ALA178 TRP179 SER180 ASN181 LYS182 SER183 ASP184 PHE185 ALA186 CYS187 ALA188 ASN189 ALA190 PHE191 ASN192 ASN193 SER194 ILE195 ILE196 PRO197 GLU198 ASP199 THR200 PHE201 PHE202 PRO203 SER204
Unit 5 GLY2 VAL3 THR4 GLN5 THR6 PRO7 LYS8 PHE9 GLN10 VAL11 LEU12 LYS13 THR14 GLY15 GLN16 SER17 MET18 THR19 LEU20 GLN21 CYS22 ALA23 GLN24 ASP25 MET26 ASN27 HIS28 GLU29 TYR30 MET31 SER32 TRP33 TYR34 ARG35 GLN36 ASP37 PRO38 GLY39 MET40 GLY41 LEU42 ARG43 LEU44 ILE45 HIS46 TYR47 SER48 VAL49 GLY50 ALA51 GLY52 ILE53 THR54 ASP55 GLN56 GLY57 GLU58 VAL59 PRO60 ASN61 GLY62 TYR63 ASN64 VAL65 SER66 ARG67 SER68 THR69 THR70 GLU71 ASP72 PHE73 PRO74 LEU75 ARG76 LEU77 LEU78 SER79 ALA80 ALA81 PRO82 SER83 GLN84 THR85 SER86 VAL87 TYR88 PHE89 CYS90 ALA91 SER92 SER93 TYR94 VAL95 GLY96 ASN97 THR98 GLY99 GLU100 LEU101 PHE102 PHE103 GLY104 GLU105 GLY106 SER107 ARG108 LEU109 THR110 VAL111 LEU112 GLU113 ASP114 LEU115 LYS116 ASN117 VAL118 PHE119 PRO120 PRO121 GLU122 VAL123 ALA124 VAL125 PHE126 GLU127 PRO128 SER129 GLU130 ALA131 GLU132 ILE133 SER134 HIS135 THR136 GLN137 LYS138 ALA139 THR140 LEU141 VAL142 CYS143 LEU144 ALA145 THR146 GLY147 PHE148 TYR149 PRO150 ASP151 HIS152 VAL153 GLU154 LEU155 SER156 TRP157 TRP158 VAL159 ASN160 GLY161 LYS162 GLU163 VAL164 HIS165 SER166 GLY167 VAL168 CYS169 THR170 ASP171 PRO172 GLN173 PRO174 LEU175 LYS176 GLU177 GLN178 PRO179 ALA180 LEU181 ASN182 ASP183 SER184 ARG185 TYR186 ALA187 LEU188 SER189 SER190 ARG191 LEU192 ARG193 VAL194 SER195 ALA196 THR197 PHE198 TRP199 GLN200 ASP201 PRO202 ARG203 ASN204 HIS205 PHE206 ARG207 CYS208 GLN209 VAL210 GLN211 PHE212 TYR213 GLY214 LEU215 SER216 GLU217 ASN218 ASP219 GLU220 TRP221 THR222 GLN223 ASP224 ARG225 ALA226 LYS227 PRO228 VAL229 THR230 GLN231 ILE232 VAL233 SER234 ALA235 GLU236 ALA237 TRP238 GLY239 ARG240 ALA241 ASP242

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany