2BMK - Sequence, Chains, Asymmetric and Biological Units

• Title: FAB FRAGMENT OF PLP-DEPENDENT CATALYTIC ANTIBODY 15A9 IN COM PHOSPHOPYRIDOXYL-D-ALANINE
• Keywords: CATALYTIC ANTIBODY, TRANSAMINATION, PYRIDOXAL-PHOSPHATE, HAP PHOSPHOPYRIDOXYL-L-LYSINE, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2BMK	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein		A	213	1610	0
2	Protein		B	224	1658	0
3	Protein		H	222	1668	0
4	Protein		L	213	1629	0
5	Ligand		B	4	0	24
6	Ligand		H	3	0	3
7	Ligand		L	1	0	21
8	Water			354	0	354
total				1234	6565	402

Proteins

Unit 1	ASP 1 ILE 2 GLU 3 LEU 4 THR 5 GLN 6 SER 7 PRO 8 ALA 9 ILE 10 MET 11 ALA 12 ALA 13 SER 14 PRO 15 GLY 16 GLU 17 LYS 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 SER 24 ALA 25 THR 26 SER 27 GLY 29 VAL 30 ASN 31 TYR 32 MET 33 HIS 34 TRP 35 PHE 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 THR 42 SER 43 PRO 44 LYS 45 LEU 46 TRP 47 ILE 48 TYR 49 SER 50 THR 51 SER 52 ASN 53 LEU 54 ALA 55 SER 56 ALA 57 VAL 58 PRO 59 ALA 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 SER 70 TYR 71 SER 72 LEU 73 THR 74 ILE 75 SER 76 ARG 77 MET 78 GLU 79 ALA 80 GLU 81 ASP 82 ALA 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 ARG 91 SER 92 THR 93 TYR 94 PRO 95 PHE 96 THR 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 LEU 104 GLU 105 LEU 106 LYS 107 ARG 108 ALA 109 ASP 110 ALA 111 ALA 112 PRO 113 THR 114 VAL 115 SER 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLN 124 LEU 125 THR 126 SER 127 GLY 128 GLY 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 PHE 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 LYS 142 ASP 143 ILE 144 ASN 145 VAL 146 LYS 147 TRP 148 LYS 149 ILE 150 ASP 151 GLY 152 SER 153 GLU 154 ARG 155 GLN 156 ASN 157 GLY 158 VAL 159 LEU 160 ASN 161 SER 162 TRP 163 THR 164 ASP 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 MET 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 THR 182 LYS 183 ASP 184 GLU 185 TYR 186 GLU 187 ARG 188 HIS 189 ASN 190 SER 191 TYR 192 THR 193 CYS 194 GLU 195 ALA 196 THR 197 HIS 198 LYS 199 THR 200 SER 201 THR 202 SER 203 PRO 204 ILE 205 VAL 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 ASN 212 GLU 213 CYS 214
Unit 2	GLU 1 VAL 2 LYS 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 HIS 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 THR 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 THR 30 ASP 31 TYR 32 TYR 33 MET 34 SER 35 TRP 36 VAL 37 ARG 38 GLN 39 PRO 40 PRO 41 GLY 42 LYS 43 ALA 44 LEU 45 GLU 46 TRP 47 LEU 48 GLY 49 LEU 50 ILE 51 ARG 52 ASN 52A LYS 52B ALA 52C ASN 53 GLY 54 TYR 55 THR 56 LYS 57 GLU 58 TYR 59 SER 60 ALA 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASN 73 SER 74 GLN 75 SER 76 ILE 77 LEU 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A ALA 82B LEU 82C ARG 83 ALA 84 GLU 85 ASP 86 SER 87 ALA 88 THR 89 TYR 90 TYR 91 CYS 92 VAL 93 ARG 94 ASP 95 LYS 96 GLY 97 SER 98 TYR 99 GLY 100 ASN 100A TYR 100B GLU 100C ALA 100D TRP 100E PHE 100F ALA 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 THR 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 LYS 115 THR 116 THR 117 PRO 118 PRO 119 SER 120 VAL 121 TYR 122 PRO 123 LEU 124 ALA 125 PRO 126 GLY 127 SER 128 GLN 131 THR 132 ASN 133 SER 134 MET 135 VAL 136 THR 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 GLY 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 THR 153 TRP 154 ASN 155 SER 156 GLY 157 SER 158 LEU 159 SER 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 ASP 173 LEU 174 TYR 175 THR 176 LEU 177 SER 178 SER 179 SER 180 VAL 181 THR 182 VAL 183 PRO 184 SER 185 SER 186 PRO 187 ARG 188 PRO 189 SER 190 GLU 191 THR 192 VAL 193 THR 194 CYS 195 ASN 196 VAL 197 ALA 198 HIS 199 PRO 200 ALA 201 SER 202 SER 203 THR 204 LYS 205 VAL 206 ASP 207 LYS 208 LYS 209 ILE 210 VAL 211 PRO 212 ARG 213 ASP 214
Unit 3	GLU 1 VAL 2 LYS 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 HIS 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 THR 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 THR 30 ASP 31 TYR 32 TYR 33 MET 34 SER 35 TRP 36 VAL 37 ARG 38 GLN 39 PRO 40 PRO 41 GLY 42 LYS 43 ALA 44 LEU 45 GLU 46 TRP 47 LEU 48 GLY 49 LEU 50 ILE 51 ARG 52 ASN 52A LYS 52B ALA 52C ASN 53 GLY 54 TYR 55 THR 56 LYS 57 GLU 58 TYR 59 SER 60 ALA 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASN 73 SER 74 GLN 75 SER 76 ILE 77 LEU 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A ALA 82B LEU 82C ARG 83 ALA 84 GLU 85 ASP 86 SER 87 ALA 88 THR 89 TYR 90 TYR 91 CYS 92 VAL 93 ARG 94 ASP 95 LYS 96 GLY 97 SER 98 TYR 99 GLY 100 ASN 100A TYR 100B GLU 100C ALA 100D TRP 100E PHE 100F ALA 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 THR 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 LYS 115 THR 116 THR 117 PRO 118 PRO 119 SER 120 VAL 121 TYR 122 PRO 123 LEU 124 ALA 125 PRO 126 GLY 127 SER 128 ASN 133 SER 134 MET 135 VAL 136 THR 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 GLY 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 THR 153 TRP 154 ASN 155 SER 156 GLY 157 SER 158 LEU 159 SER 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 ASP 173 LEU 174 TYR 175 THR 176 LEU 177 SER 178 SER 179 SER 180 VAL 181 THR 182 VAL 183 PRO 184 SER 185 SER 186 PRO 187 ARG 188 PRO 189 SER 190 GLU 191 THR 192 VAL 193 THR 194 CYS 195 ASN 196 VAL 197 ALA 198 HIS 199 PRO 200 ALA 201 SER 202 SER 203 THR 204 LYS 205 VAL 206 ASP 207 LYS 208 LYS 209 ILE 210 VAL 211 PRO 212 ARG 213 ASP 214
Unit 4	ASP 1 ILE 2 GLU 3 LEU 4 THR 5 GLN 6 SER 7 PRO 8 ALA 9 ILE 10 MET 11 ALA 12 ALA 13 SER 14 PRO 15 GLY 16 GLU 17 LYS 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 SER 24 ALA 25 THR 26 SER 27 GLY 29 VAL 30 ASN 31 TYR 32 MET 33 HIS 34 TRP 35 PHE 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 THR 42 SER 43 PRO 44 LYS 45 LEU 46 TRP 47 ILE 48 TYR 49 SER 50 THR 51 SER 52 ASN 53 LEU 54 ALA 55 SER 56 ALA 57 VAL 58 PRO 59 ALA 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 SER 70 TYR 71 SER 72 LEU 73 THR 74 ILE 75 SER 76 ARG 77 MET 78 GLU 79 ALA 80 GLU 81 ASP 82 ALA 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 ARG 91 SER 92 THR 93 TYR 94 PRO 95 PHE 96 THR 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 LEU 104 GLU 105 LEU 106 LYS 107 ARG 108 ALA 109 ASP 110 ALA 111 ALA 112 PRO 113 THR 114 VAL 115 SER 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLN 124 LEU 125 THR 126 SER 127 GLY 128 GLY 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 PHE 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 LYS 142 ASP 143 ILE 144 ASN 145 VAL 146 LYS 147 TRP 148 LYS 149 ILE 150 ASP 151 GLY 152 SER 153 GLU 154 ARG 155 GLN 156 ASN 157 GLY 158 VAL 159 LEU 160 ASN 161 SER 162 TRP 163 THR 164 ASP 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 MET 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 THR 182 LYS 183 ASP 184 GLU 185 TYR 186 GLU 187 ARG 188 HIS 189 ASN 190 SER 191 TYR 192 THR 193 CYS 194 GLU 195 ALA 196 THR 197 HIS 198 LYS 199 THR 200 SER 201 THR 202 SER 203 PRO 204 ILE 205 VAL 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 ASN 212 GLU 213 CYS 214

Ligands

Unit 5	IOD 1215 IOD 1216 PDD 1217 IOD 1218
Unit 6	IOD 1215 IOD 1216 IOD 1217
Unit 7	PDD 1215