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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF APOCAROTENOID CLEAVAGE OXYGENASE FROM SYNECHOCYSTIS, NATIVE ENZYME
Keywords OXYGENASE, NON-HEME IRON, CAROTENOID CLEAVAGE, RETINAL FORMA OXIDOREDUCTASE, DIOXYGENASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2BIW     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   APOCAROTENOID-CLEAVING OXYGENASE  A 479 3767 0
2  Protein   APOCAROTENOID-CLEAVING OXYGENASE  B 479 3767 0
3  Protein   APOCAROTENOID-CLEAVING OXYGENASE  C 479 3767 0
4  Protein   APOCAROTENOID-CLEAVING OXYGENASE  D 479 3767 0
5  Ligand   APOCAROTENOID-CLEAVING OXYGENASE  A 2 0 33
6  Ligand   APOCAROTENOID-CLEAVING OXYGENASE  B 2 0 33
7  Ligand   APOCAROTENOID-CLEAVING OXYGENASE  C 2 0 33
8  Ligand   APOCAROTENOID-CLEAVING OXYGENASE  D 2 0 33
9 Water     542 0 542
total       2466 15068 674
Proteins
Unit 1 GLN12 ARG13 SER14 TYR15 SER16 PRO17 GLN18 ASP19 TRP20 LEU21 ARG22 GLY23 TYR24 GLN25 SER26 GLN27 PRO28 GLN29 GLU30 TRP31 ASP32 TYR33 TRP34 VAL35 GLU36 ASP37 VAL38 GLU39 GLY40 SER41 ILE42 PRO43 PRO44 ASP45 LEU46 GLN47 GLY48 THR49 LEU50 TYR51 ARG52 ASN53 GLY54 PRO55 GLY56 LEU57 LEU58 GLU59 ILE60 GLY61 ASP62 ARG63 PRO64 LEU65 LYS66 HIS67 PRO68 PHE69 ASP70 GLY71 ASP72 GLY73 MET74 VAL75 THR76 ALA77 PHE78 LYS79 PHE80 PRO81 GLY82 ASP83 GLY84 ARG85 VAL86 HIS87 PHE88 GLN89 SER90 LYS91 PHE92 VAL93 ARG94 THR95 GLN96 GLY97 TYR98 VAL99 GLU100 GLU101 GLN102 LYS103 ALA104 GLY105 LYS106 MET107 ILE108 TYR109 ARG110 GLY111 VAL112 PHE113 GLY114 SER115 GLN116 PRO117 ALA118 GLY119 GLY120 TRP121 LEU122 LYS123 THR124 ILE125 PHE126 ASP127 LEU128 ARG129 LEU130 LYS131 ASN132 ILE133 ALA134 ASN135 THR136 ASN137 ILE138 THR139 TYR140 TRP141 GLY142 ASP143 ARG144 LEU145 LEU146 ALA147 LEU148 TRP149 GLU150 GLY151 GLY152 GLN153 PRO154 HIS155 ARG156 LEU157 GLU158 PRO159 SER160 ASN161 LEU162 ALA163 THR164 ILE165 GLY166 LEU167 ASP168 ASP169 LEU170 GLY171 GLY172 ILE173 LEU174 ALA175 GLU176 GLY177 GLN178 PRO179 LEU180 SER181 ALA182 HIS183 PRO184 ARG185 ILE186 ASP187 PRO188 ALA189 SER190 THR191 PHE192 ASP193 GLY194 GLY195 GLN196 PRO197 CYS198 TYR199 VAL200 THR201 PHE202 SER203 ILE204 LYS205 SER206 SER207 LEU208 SER209 SER210 THR211 LEU212 THR213 LEU214 LEU215 GLU216 LEU217 ASP218 PRO219 GLN220 GLY221 LYS222 LEU223 LEU224 ARG225 GLN226 LYS227 THR228 GLU229 THR230 PHE231 PRO232 GLY233 PHE234 ALA235 PHE236 ILE237 HIS238 ASP239 PHE240 ALA241 ILE242 THR243 PRO244 HIS245 TYR246 ALA247 ILE248 PHE249 LEU250 GLN251 ASN252 ASN253 VAL254 THR255 LEU256 ASN257 GLY258 LEU259 PRO260 TYR261 LEU262 PHE263 GLY264 LEU265 ARG266 GLY267 ALA268 GLY269 GLU270 CYS271 VAL272 GLN273 PHE274 HIS275 PRO276 ASP277 LYS278 PRO279 ALA280 GLN281 ILE282 ILE283 LEU284 VAL285 PRO286 ARG287 ASP288 GLY289 GLY290 GLU291 ILE292 LYS293 ARG294 ILE295 PRO296 VAL297 GLN298 ALA299 GLY300 PHE301 VAL302 PHE303 HIS304 HIS305 ALA306 ASN307 ALA308 PHE309 GLU310 GLU311 ASN312 GLY313 LYS314 ILE315 ILE316 LEU317 ASP318 SER319 ILE320 CYS321 TYR322 ASN323 SER324 LEU325 PRO326 GLN327 VAL328 ASP329 THR330 ASP331 GLY332 ASP333 PHE334 ARG335 SER336 THR337 ASN338 PHE339 ASP340 ASN341 LEU342 ASP343 PRO344 GLY345 GLN346 LEU347 TRP348 ARG349 PHE350 THR351 ILE352 ASP353 PRO354 ALA355 ALA356 ALA357 THR358 VAL359 GLU360 LYS361 GLN362 LEU363 MET364 VAL365 SER366 ARG367 CYS368 CYS369 GLU370 PHE371 PRO372 VAL373 VAL374 HIS375 PRO376 GLN377 GLN378 VAL379 GLY380 ARG381 PRO382 TYR383 ARG384 TYR385 VAL386 TYR387 MET388 GLY389 ALA390 ALA391 HIS392 HIS393 SER394 THR395 GLY396 ASN397 ALA398 PRO399 LEU400 GLN401 ALA402 ILE403 LEU404 LYS405 VAL406 ASP407 LEU408 GLU409 SER410 GLY411 THR412 GLU413 THR414 LEU415 ARG416 SER417 PHE418 ALA419 PRO420 HIS421 GLY422 PHE423 ALA424 GLY425 GLU426 PRO427 ILE428 PHE429 VAL430 PRO431 ARG432 PRO433 GLY434 GLY435 VAL436 ALA437 GLU438 ASP439 ASP440 GLY441 TRP442 LEU443 LEU444 CYS445 LEU446 ILE447 TYR448 LYS449 ALA450 ASP451 LEU452 HIS453 ARG454 SER455 GLU456 LEU457 VAL458 ILE459 LEU460 ASP461 ALA462 GLN463 ASP464 ILE465 THR466 ALA467 PRO468 ALA469 ILE470 ALA471 THR472 LEU473 LYS474 LEU475 LYS476 HIS477 HIS478 ILE479 PRO480 TYR481 PRO482 LEU483 HIS484 GLY485 SER486 TRP487 ALA488 GLN489 THR490
Unit 2 GLN12 ARG13 SER14 TYR15 SER16 PRO17 GLN18 ASP19 TRP20 LEU21 ARG22 GLY23 TYR24 GLN25 SER26 GLN27 PRO28 GLN29 GLU30 TRP31 ASP32 TYR33 TRP34 VAL35 GLU36 ASP37 VAL38 GLU39 GLY40 SER41 ILE42 PRO43 PRO44 ASP45 LEU46 GLN47 GLY48 THR49 LEU50 TYR51 ARG52 ASN53 GLY54 PRO55 GLY56 LEU57 LEU58 GLU59 ILE60 GLY61 ASP62 ARG63 PRO64 LEU65 LYS66 HIS67 PRO68 PHE69 ASP70 GLY71 ASP72 GLY73 MET74 VAL75 THR76 ALA77 PHE78 LYS79 PHE80 PRO81 GLY82 ASP83 GLY84 ARG85 VAL86 HIS87 PHE88 GLN89 SER90 LYS91 PHE92 VAL93 ARG94 THR95 GLN96 GLY97 TYR98 VAL99 GLU100 GLU101 GLN102 LYS103 ALA104 GLY105 LYS106 MET107 ILE108 TYR109 ARG110 GLY111 VAL112 PHE113 GLY114 SER115 GLN116 PRO117 ALA118 GLY119 GLY120 TRP121 LEU122 LYS123 THR124 ILE125 PHE126 ASP127 LEU128 ARG129 LEU130 LYS131 ASN132 ILE133 ALA134 ASN135 THR136 ASN137 ILE138 THR139 TYR140 TRP141 GLY142 ASP143 ARG144 LEU145 LEU146 ALA147 LEU148 TRP149 GLU150 GLY151 GLY152 GLN153 PRO154 HIS155 ARG156 LEU157 GLU158 PRO159 SER160 ASN161 LEU162 ALA163 THR164 ILE165 GLY166 LEU167 ASP168 ASP169 LEU170 GLY171 GLY172 ILE173 LEU174 ALA175 GLU176 GLY177 GLN178 PRO179 LEU180 SER181 ALA182 HIS183 PRO184 ARG185 ILE186 ASP187 PRO188 ALA189 SER190 THR191 PHE192 ASP193 GLY194 GLY195 GLN196 PRO197 CYS198 TYR199 VAL200 THR201 PHE202 SER203 ILE204 LYS205 SER206 SER207 LEU208 SER209 SER210 THR211 LEU212 THR213 LEU214 LEU215 GLU216 LEU217 ASP218 PRO219 GLN220 GLY221 LYS222 LEU223 LEU224 ARG225 GLN226 LYS227 THR228 GLU229 THR230 PHE231 PRO232 GLY233 PHE234 ALA235 PHE236 ILE237 HIS238 ASP239 PHE240 ALA241 ILE242 THR243 PRO244 HIS245 TYR246 ALA247 ILE248 PHE249 LEU250 GLN251 ASN252 ASN253 VAL254 THR255 LEU256 ASN257 GLY258 LEU259 PRO260 TYR261 LEU262 PHE263 GLY264 LEU265 ARG266 GLY267 ALA268 GLY269 GLU270 CYS271 VAL272 GLN273 PHE274 HIS275 PRO276 ASP277 LYS278 PRO279 ALA280 GLN281 ILE282 ILE283 LEU284 VAL285 PRO286 ARG287 ASP288 GLY289 GLY290 GLU291 ILE292 LYS293 ARG294 ILE295 PRO296 VAL297 GLN298 ALA299 GLY300 PHE301 VAL302 PHE303 HIS304 HIS305 ALA306 ASN307 ALA308 PHE309 GLU310 GLU311 ASN312 GLY313 LYS314 ILE315 ILE316 LEU317 ASP318 SER319 ILE320 CYS321 TYR322 ASN323 SER324 LEU325 PRO326 GLN327 VAL328 ASP329 THR330 ASP331 GLY332 ASP333 PHE334 ARG335 SER336 THR337 ASN338 PHE339 ASP340 ASN341 LEU342 ASP343 PRO344 GLY345 GLN346 LEU347 TRP348 ARG349 PHE350 THR351 ILE352 ASP353 PRO354 ALA355 ALA356 ALA357 THR358 VAL359 GLU360 LYS361 GLN362 LEU363 MET364 VAL365 SER366 ARG367 CYS368 CYS369 GLU370 PHE371 PRO372 VAL373 VAL374 HIS375 PRO376 GLN377 GLN378 VAL379 GLY380 ARG381 PRO382 TYR383 ARG384 TYR385 VAL386 TYR387 MET388 GLY389 ALA390 ALA391 HIS392 HIS393 SER394 THR395 GLY396 ASN397 ALA398 PRO399 LEU400 GLN401 ALA402 ILE403 LEU404 LYS405 VAL406 ASP407 LEU408 GLU409 SER410 GLY411 THR412 GLU413 THR414 LEU415 ARG416 SER417 PHE418 ALA419 PRO420 HIS421 GLY422 PHE423 ALA424 GLY425 GLU426 PRO427 ILE428 PHE429 VAL430 PRO431 ARG432 PRO433 GLY434 GLY435 VAL436 ALA437 GLU438 ASP439 ASP440 GLY441 TRP442 LEU443 LEU444 CYS445 LEU446 ILE447 TYR448 LYS449 ALA450 ASP451 LEU452 HIS453 ARG454 SER455 GLU456 LEU457 VAL458 ILE459 LEU460 ASP461 ALA462 GLN463 ASP464 ILE465 THR466 ALA467 PRO468 ALA469 ILE470 ALA471 THR472 LEU473 LYS474 LEU475 LYS476 HIS477 HIS478 ILE479 PRO480 TYR481 PRO482 LEU483 HIS484 GLY485 SER486 TRP487 ALA488 GLN489 THR490
Unit 3 GLN12 ARG13 SER14 TYR15 SER16 PRO17 GLN18 ASP19 TRP20 LEU21 ARG22 GLY23 TYR24 GLN25 SER26 GLN27 PRO28 GLN29 GLU30 TRP31 ASP32 TYR33 TRP34 VAL35 GLU36 ASP37 VAL38 GLU39 GLY40 SER41 ILE42 PRO43 PRO44 ASP45 LEU46 GLN47 GLY48 THR49 LEU50 TYR51 ARG52 ASN53 GLY54 PRO55 GLY56 LEU57 LEU58 GLU59 ILE60 GLY61 ASP62 ARG63 PRO64 LEU65 LYS66 HIS67 PRO68 PHE69 ASP70 GLY71 ASP72 GLY73 MET74 VAL75 THR76 ALA77 PHE78 LYS79 PHE80 PRO81 GLY82 ASP83 GLY84 ARG85 VAL86 HIS87 PHE88 GLN89 SER90 LYS91 PHE92 VAL93 ARG94 THR95 GLN96 GLY97 TYR98 VAL99 GLU100 GLU101 GLN102 LYS103 ALA104 GLY105 LYS106 MET107 ILE108 TYR109 ARG110 GLY111 VAL112 PHE113 GLY114 SER115 GLN116 PRO117 ALA118 GLY119 GLY120 TRP121 LEU122 LYS123 THR124 ILE125 PHE126 ASP127 LEU128 ARG129 LEU130 LYS131 ASN132 ILE133 ALA134 ASN135 THR136 ASN137 ILE138 THR139 TYR140 TRP141 GLY142 ASP143 ARG144 LEU145 LEU146 ALA147 LEU148 TRP149 GLU150 GLY151 GLY152 GLN153 PRO154 HIS155 ARG156 LEU157 GLU158 PRO159 SER160 ASN161 LEU162 ALA163 THR164 ILE165 GLY166 LEU167 ASP168 ASP169 LEU170 GLY171 GLY172 ILE173 LEU174 ALA175 GLU176 GLY177 GLN178 PRO179 LEU180 SER181 ALA182 HIS183 PRO184 ARG185 ILE186 ASP187 PRO188 ALA189 SER190 THR191 PHE192 ASP193 GLY194 GLY195 GLN196 PRO197 CYS198 TYR199 VAL200 THR201 PHE202 SER203 ILE204 LYS205 SER206 SER207 LEU208 SER209 SER210 THR211 LEU212 THR213 LEU214 LEU215 GLU216 LEU217 ASP218 PRO219 GLN220 GLY221 LYS222 LEU223 LEU224 ARG225 GLN226 LYS227 THR228 GLU229 THR230 PHE231 PRO232 GLY233 PHE234 ALA235 PHE236 ILE237 HIS238 ASP239 PHE240 ALA241 ILE242 THR243 PRO244 HIS245 TYR246 ALA247 ILE248 PHE249 LEU250 GLN251 ASN252 ASN253 VAL254 THR255 LEU256 ASN257 GLY258 LEU259 PRO260 TYR261 LEU262 PHE263 GLY264 LEU265 ARG266 GLY267 ALA268 GLY269 GLU270 CYS271 VAL272 GLN273 PHE274 HIS275 PRO276 ASP277 LYS278 PRO279 ALA280 GLN281 ILE282 ILE283 LEU284 VAL285 PRO286 ARG287 ASP288 GLY289 GLY290 GLU291 ILE292 LYS293 ARG294 ILE295 PRO296 VAL297 GLN298 ALA299 GLY300 PHE301 VAL302 PHE303 HIS304 HIS305 ALA306 ASN307 ALA308 PHE309 GLU310 GLU311 ASN312 GLY313 LYS314 ILE315 ILE316 LEU317 ASP318 SER319 ILE320 CYS321 TYR322 ASN323 SER324 LEU325 PRO326 GLN327 VAL328 ASP329 THR330 ASP331 GLY332 ASP333 PHE334 ARG335 SER336 THR337 ASN338 PHE339 ASP340 ASN341 LEU342 ASP343 PRO344 GLY345 GLN346 LEU347 TRP348 ARG349 PHE350 THR351 ILE352 ASP353 PRO354 ALA355 ALA356 ALA357 THR358 VAL359 GLU360 LYS361 GLN362 LEU363 MET364 VAL365 SER366 ARG367 CYS368 CYS369 GLU370 PHE371 PRO372 VAL373 VAL374 HIS375 PRO376 GLN377 GLN378 VAL379 GLY380 ARG381 PRO382 TYR383 ARG384 TYR385 VAL386 TYR387 MET388 GLY389 ALA390 ALA391 HIS392 HIS393 SER394 THR395 GLY396 ASN397 ALA398 PRO399 LEU400 GLN401 ALA402 ILE403 LEU404 LYS405 VAL406 ASP407 LEU408 GLU409 SER410 GLY411 THR412 GLU413 THR414 LEU415 ARG416 SER417 PHE418 ALA419 PRO420 HIS421 GLY422 PHE423 ALA424 GLY425 GLU426 PRO427 ILE428 PHE429 VAL430 PRO431 ARG432 PRO433 GLY434 GLY435 VAL436 ALA437 GLU438 ASP439 ASP440 GLY441 TRP442 LEU443 LEU444 CYS445 LEU446 ILE447 TYR448 LYS449 ALA450 ASP451 LEU452 HIS453 ARG454 SER455 GLU456 LEU457 VAL458 ILE459 LEU460 ASP461 ALA462 GLN463 ASP464 ILE465 THR466 ALA467 PRO468 ALA469 ILE470 ALA471 THR472 LEU473 LYS474 LEU475 LYS476 HIS477 HIS478 ILE479 PRO480 TYR481 PRO482 LEU483 HIS484 GLY485 SER486 TRP487 ALA488 GLN489 THR490
Unit 4 GLN12 ARG13 SER14 TYR15 SER16 PRO17 GLN18 ASP19 TRP20 LEU21 ARG22 GLY23 TYR24 GLN25 SER26 GLN27 PRO28 GLN29 GLU30 TRP31 ASP32 TYR33 TRP34 VAL35 GLU36 ASP37 VAL38 GLU39 GLY40 SER41 ILE42 PRO43 PRO44 ASP45 LEU46 GLN47 GLY48 THR49 LEU50 TYR51 ARG52 ASN53 GLY54 PRO55 GLY56 LEU57 LEU58 GLU59 ILE60 GLY61 ASP62 ARG63 PRO64 LEU65 LYS66 HIS67 PRO68 PHE69 ASP70 GLY71 ASP72 GLY73 MET74 VAL75 THR76 ALA77 PHE78 LYS79 PHE80 PRO81 GLY82 ASP83 GLY84 ARG85 VAL86 HIS87 PHE88 GLN89 SER90 LYS91 PHE92 VAL93 ARG94 THR95 GLN96 GLY97 TYR98 VAL99 GLU100 GLU101 GLN102 LYS103 ALA104 GLY105 LYS106 MET107 ILE108 TYR109 ARG110 GLY111 VAL112 PHE113 GLY114 SER115 GLN116 PRO117 ALA118 GLY119 GLY120 TRP121 LEU122 LYS123 THR124 ILE125 PHE126 ASP127 LEU128 ARG129 LEU130 LYS131 ASN132 ILE133 ALA134 ASN135 THR136 ASN137 ILE138 THR139 TYR140 TRP141 GLY142 ASP143 ARG144 LEU145 LEU146 ALA147 LEU148 TRP149 GLU150 GLY151 GLY152 GLN153 PRO154 HIS155 ARG156 LEU157 GLU158 PRO159 SER160 ASN161 LEU162 ALA163 THR164 ILE165 GLY166 LEU167 ASP168 ASP169 LEU170 GLY171 GLY172 ILE173 LEU174 ALA175 GLU176 GLY177 GLN178 PRO179 LEU180 SER181 ALA182 HIS183 PRO184 ARG185 ILE186 ASP187 PRO188 ALA189 SER190 THR191 PHE192 ASP193 GLY194 GLY195 GLN196 PRO197 CYS198 TYR199 VAL200 THR201 PHE202 SER203 ILE204 LYS205 SER206 SER207 LEU208 SER209 SER210 THR211 LEU212 THR213 LEU214 LEU215 GLU216 LEU217 ASP218 PRO219 GLN220 GLY221 LYS222 LEU223 LEU224 ARG225 GLN226 LYS227 THR228 GLU229 THR230 PHE231 PRO232 GLY233 PHE234 ALA235 PHE236 ILE237 HIS238 ASP239 PHE240 ALA241 ILE242 THR243 PRO244 HIS245 TYR246 ALA247 ILE248 PHE249 LEU250 GLN251 ASN252 ASN253 VAL254 THR255 LEU256 ASN257 GLY258 LEU259 PRO260 TYR261 LEU262 PHE263 GLY264 LEU265 ARG266 GLY267 ALA268 GLY269 GLU270 CYS271 VAL272 GLN273 PHE274 HIS275 PRO276 ASP277 LYS278 PRO279 ALA280 GLN281 ILE282 ILE283 LEU284 VAL285 PRO286 ARG287 ASP288 GLY289 GLY290 GLU291 ILE292 LYS293 ARG294 ILE295 PRO296 VAL297 GLN298 ALA299 GLY300 PHE301 VAL302 PHE303 HIS304 HIS305 ALA306 ASN307 ALA308 PHE309 GLU310 GLU311 ASN312 GLY313 LYS314 ILE315 ILE316 LEU317 ASP318 SER319 ILE320 CYS321 TYR322 ASN323 SER324 LEU325 PRO326 GLN327 VAL328 ASP329 THR330 ASP331 GLY332 ASP333 PHE334 ARG335 SER336 THR337 ASN338 PHE339 ASP340 ASN341 LEU342 ASP343 PRO344 GLY345 GLN346 LEU347 TRP348 ARG349 PHE350 THR351 ILE352 ASP353 PRO354 ALA355 ALA356 ALA357 THR358 VAL359 GLU360 LYS361 GLN362 LEU363 MET364 VAL365 SER366 ARG367 CYS368 CYS369 GLU370 PHE371 PRO372 VAL373 VAL374 HIS375 PRO376 GLN377 GLN378 VAL379 GLY380 ARG381 PRO382 TYR383 ARG384 TYR385 VAL386 TYR387 MET388 GLY389 ALA390 ALA391 HIS392 HIS393 SER394 THR395 GLY396 ASN397 ALA398 PRO399 LEU400 GLN401 ALA402 ILE403 LEU404 LYS405 VAL406 ASP407 LEU408 GLU409 SER410 GLY411 THR412 GLU413 THR414 LEU415 ARG416 SER417 PHE418 ALA419 PRO420 HIS421 GLY422 PHE423 ALA424 GLY425 GLU426 PRO427 ILE428 PHE429 VAL430 PRO431 ARG432 PRO433 GLY434 GLY435 VAL436 ALA437 GLU438 ASP439 ASP440 GLY441 TRP442 LEU443 LEU444 CYS445 LEU446 ILE447 TYR448 LYS449 ALA450 ASP451 LEU452 HIS453 ARG454 SER455 GLU456 LEU457 VAL458 ILE459 LEU460 ASP461 ALA462 GLN463 ASP464 ILE465 THR466 ALA467 PRO468 ALA469 ILE470 ALA471 THR472 LEU473 LYS474 LEU475 LYS476 HIS477 HIS478 ILE479 PRO480 TYR481 PRO482 LEU483 HIS484 GLY485 SER486 TRP487 ALA488 GLN489 THR490
Ligands
Unit 5 3ON1491 FE1492
Unit 6 3ON1491 FE1492
Unit 7 3ON1491 FE1492
Unit 8 3ON1491 FE1492
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany