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Title | STRUCTURE OF HIV-1(MAL) GENOMIC RNA DIS | |
Keywords | HIV-1, RNA, HAIRPIN | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2B8S | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | A | 23 | 490 | 0 | |
2 | RNA | B | 23 | 490 | 0 | |
3 | Ligand | 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP *CP*AP*AP*G)-3' | A | 8 | 0 | 20 |
4 | Ligand | 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP *CP*AP*AP*G)-3' | B | 6 | 0 | 18 |
5 | Water | 115 | 0 | 115 | ||
total | 175 | 980 | 153 |
Unit 1 | C1 U2 U3 G4 C5 U6 G7 A8 G9 G10 U11 G12 C13 A14 C15 A16 C17 A18 G19 C20 A21 A22 G23 |
Unit 2 | C1 U2 U3 G4 C5 U6 G7 A8 G9 G10 U11 G12 C13 A14 C15 A16 C17 A18 G19 C20 A21 A22 G23 |
Unit 3 | MG103 SO4104 MG105 SO4106 NA107 MG108 MG113 SO4114 |
Unit 4 | SO4101 SO4102 SO4109 MG110 NA111 MG112 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |