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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF HIV-1(MAL) GENOMIC RNA DIS
Keywords HIV-1, RNA, HAIRPIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2B8S     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 23 490 0
2  RNA    B 23 490 0
3  Ligand   5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP *CP*AP*AP*G)-3'  A 8 0 20
4  Ligand   5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP *CP*AP*AP*G)-3'  B 6 0 18
5 Water     115 0 115
total       175 980 153

Nucleic acids
Unit 1 C1 U2 U3 G4 C5 U6 G7 A8 G9 G10 U11 G12 C13 A14 C15 A16 C17 A18 G19 C20 A21 A22 G23
Unit 2 C1 U2 U3 G4 C5 U6 G7 A8 G9 G10 U11 G12 C13 A14 C15 A16 C17 A18 G19 C20 A21 A22 G23

Ligands
Unit 3 MG103 SO4104 MG105 SO4106 NA107 MG108 MG113 SO4114
Unit 4 SO4101 SO4102 SO4109 MG110 NA111 MG112

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany