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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENAS PLASMODIUM FALCIPARUM AT 2.25 ANGSTROM RESOLUTION REVEALS I EXTRA ELECTRON DENSITY IN THE ACTIVE SITE
Keywords STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, GAPD GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, STRUCTURAL GENOMI PATHOGENIC PROTOZOA CONSORTIUM, SGPP, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2B4T     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  O 333 2546 0
2  Protein   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  P 333 2546 0
3  Protein   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  Q 333 2546 0
4  Protein   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  R 333 2546 0
5  Ligand   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  O 2 0 57
6  Ligand   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  P 2 0 57
7  Ligand   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  Q 1 0 44
8  Ligand   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  R 2 0 57
9 Water     232 0 232
total       1571 10184 447
Proteins
Unit 1 THR4 LYS5 LEU6 GLY7 ILE8 ASN9 GLY10 PHE11 GLY12 ARG13 ILE14 GLY15 ARG16 LEU17 VAL18 PHE19 ARG20 ALA21 ALA22 PHE23 GLY24 ARG25 LYS26 ASP27 ILE28 GLU29 VAL30 VAL31 ALA32 ILE33 ASN34 ASP35 PRO36 PHE37 MET38 ASP39 LEU40 ASN41 HIS42 LEU43 CYS44 TYR45 LEU46 LEU47 LYS48 TYR49 ASP50 SER51 VAL52 HIS53 GLY54 GLN55 PHE56 PRO57 CYS58 GLU59 VAL60 THR61 HIS62 ALA63 ASP64 GLY65 PHE66 LEU67 LEU68 ILE69 GLY70 GLU71 LYS72 LYS73 VAL74 SER75 VAL76 PHE77 ALA78 GLU79 LYS80 ASP81 PRO82 SER83 GLN84 ILE85 PRO86 TRP87 GLY88 LYS89 CYS90 GLN91 VAL92 ASP93 VAL94 VAL95 CYS96 GLU97 SER98 THR99 GLY100 VAL101 PHE102 LEU103 THR104 LYS105 GLU106 LEU107 ALA108 SER109 SER110 HIS111 LEU112 LYS113 GLY114 GLY115 ALA116 LYS117 LYS118 VAL119 ILE120 MET121 SER122 ALA123 PRO124 PRO125 LYS126 ASP127 ASP128 THR129 PRO130 ILE131 TYR132 VAL133 MET134 GLY135 ILE136 ASN137 HIS138 HIS139 GLN140 TYR141 ASP142 THR143 LYS144 GLN145 LEU146 ILE147 VAL148 SER149 ASN150 ALA151 SER152 CYS153 THR154 THR155 ASN156 CYS157 LEU158 ALA159 PRO160 LEU161 ALA162 LYS163 VAL164 ILE165 ASN166 ASP167 ARG168 PHE169 GLY170 ILE171 VAL172 GLU173 GLY174 LEU175 MET176 THR177 THR178 VAL179 HIS180 ALA181 SER182 THR183 ALA184 ASN185 GLN186 LEU187 VAL188 VAL189 ASP190 GLY191 PRO192 SER193 LYS194 GLY195 GLY196 LYS197 ASP198 TRP199 ARG200 ALA201 GLY202 ARG203 CYS204 ALA205 LEU206 SER207 ASN208 ILE209 ILE210 PRO211 ALA212 SER213 THR214 GLY215 ALA216 ALA217 LYS218 ALA219 VAL220 GLY221 LYS222 VAL223 LEU224 PRO225 GLU226 LEU227 ASN228 GLY229 LYS230 LEU231 THR232 GLY233 VAL234 ALA235 PHE236 ARG237 VAL238 PRO239 ILE240 GLY241 THR242 VAL243 SER244 VAL245 VAL246 ASP247 LEU248 VAL249 CYS250 ARG251 LEU252 GLN253 LYS254 PRO255 ALA256 LYS257 TYR258 GLU259 GLU260 VAL261 ALA262 LEU263 GLU264 ILE265 LYS266 LYS267 ALA268 ALA269 GLU270 GLY271 PRO272 LEU273 LYS274 GLY275 ILE276 LEU277 GLY278 TYR279 THR280 GLU281 ASP282 GLU283 VAL284 VAL285 SER286 GLN287 ASP288 PHE289 VAL290 HIS291 ASP292 ASN293 ARG294 SER295 SER296 ILE297 PHE298 ASP299 MET300 LYS301 ALA302 GLY303 LEU304 ALA305 LEU306 ASN307 ASP308 ASN309 PHE310 PHE311 LYS312 LEU313 VAL314 SER315 TRP316 TYR317 ASP318 ASN319 GLU320 TRP321 GLY322 TYR323 SER324 ASN325 ARG326 VAL327 LEU328 ASP329 LEU330 ALA331 VAL332 HIS333 ILE334 THR335 THR336
Unit 2 THR4 LYS5 LEU6 GLY7 ILE8 ASN9 GLY10 PHE11 GLY12 ARG13 ILE14 GLY15 ARG16 LEU17 VAL18 PHE19 ARG20 ALA21 ALA22 PHE23 GLY24 ARG25 LYS26 ASP27 ILE28 GLU29 VAL30 VAL31 ALA32 ILE33 ASN34 ASP35 PRO36 PHE37 MET38 ASP39 LEU40 ASN41 HIS42 LEU43 CYS44 TYR45 LEU46 LEU47 LYS48 TYR49 ASP50 SER51 VAL52 HIS53 GLY54 GLN55 PHE56 PRO57 CYS58 GLU59 VAL60 THR61 HIS62 ALA63 ASP64 GLY65 PHE66 LEU67 LEU68 ILE69 GLY70 GLU71 LYS72 LYS73 VAL74 SER75 VAL76 PHE77 ALA78 GLU79 LYS80 ASP81 PRO82 SER83 GLN84 ILE85 PRO86 TRP87 GLY88 LYS89 CYS90 GLN91 VAL92 ASP93 VAL94 VAL95 CYS96 GLU97 SER98 THR99 GLY100 VAL101 PHE102 LEU103 THR104 LYS105 GLU106 LEU107 ALA108 SER109 SER110 HIS111 LEU112 LYS113 GLY114 GLY115 ALA116 LYS117 LYS118 VAL119 ILE120 MET121 SER122 ALA123 PRO124 PRO125 LYS126 ASP127 ASP128 THR129 PRO130 ILE131 TYR132 VAL133 MET134 GLY135 ILE136 ASN137 HIS138 HIS139 GLN140 TYR141 ASP142 THR143 LYS144 GLN145 LEU146 ILE147 VAL148 SER149 ASN150 ALA151 SER152 CYS153 THR154 THR155 ASN156 CYS157 LEU158 ALA159 PRO160 LEU161 ALA162 LYS163 VAL164 ILE165 ASN166 ASP167 ARG168 PHE169 GLY170 ILE171 VAL172 GLU173 GLY174 LEU175 MET176 THR177 THR178 VAL179 HIS180 ALA181 SER182 THR183 ALA184 ASN185 GLN186 LEU187 VAL188 VAL189 ASP190 GLY191 PRO192 SER193 LYS194 GLY195 GLY196 LYS197 ASP198 TRP199 ARG200 ALA201 GLY202 ARG203 CYS204 ALA205 LEU206 SER207 ASN208 ILE209 ILE210 PRO211 ALA212 SER213 THR214 GLY215 ALA216 ALA217 LYS218 ALA219 VAL220 GLY221 LYS222 VAL223 LEU224 PRO225 GLU226 LEU227 ASN228 GLY229 LYS230 LEU231 THR232 GLY233 VAL234 ALA235 PHE236 ARG237 VAL238 PRO239 ILE240 GLY241 THR242 VAL243 SER244 VAL245 VAL246 ASP247 LEU248 VAL249 CYS250 ARG251 LEU252 GLN253 LYS254 PRO255 ALA256 LYS257 TYR258 GLU259 GLU260 VAL261 ALA262 LEU263 GLU264 ILE265 LYS266 LYS267 ALA268 ALA269 GLU270 GLY271 PRO272 LEU273 LYS274 GLY275 ILE276 LEU277 GLY278 TYR279 THR280 GLU281 ASP282 GLU283 VAL284 VAL285 SER286 GLN287 ASP288 PHE289 VAL290 HIS291 ASP292 ASN293 ARG294 SER295 SER296 ILE297 PHE298 ASP299 MET300 LYS301 ALA302 GLY303 LEU304 ALA305 LEU306 ASN307 ASP308 ASN309 PHE310 PHE311 LYS312 LEU313 VAL314 SER315 TRP316 TYR317 ASP318 ASN319 GLU320 TRP321 GLY322 TYR323 SER324 ASN325 ARG326 VAL327 LEU328 ASP329 LEU330 ALA331 VAL332 HIS333 ILE334 THR335 THR336
Unit 3 THR4 LYS5 LEU6 GLY7 ILE8 ASN9 GLY10 PHE11 GLY12 ARG13 ILE14 GLY15 ARG16 LEU17 VAL18 PHE19 ARG20 ALA21 ALA22 PHE23 GLY24 ARG25 LYS26 ASP27 ILE28 GLU29 VAL30 VAL31 ALA32 ILE33 ASN34 ASP35 PRO36 PHE37 MET38 ASP39 LEU40 ASN41 HIS42 LEU43 CYS44 TYR45 LEU46 LEU47 LYS48 TYR49 ASP50 SER51 VAL52 HIS53 GLY54 GLN55 PHE56 PRO57 CYS58 GLU59 VAL60 THR61 HIS62 ALA63 ASP64 GLY65 PHE66 LEU67 LEU68 ILE69 GLY70 GLU71 LYS72 LYS73 VAL74 SER75 VAL76 PHE77 ALA78 GLU79 LYS80 ASP81 PRO82 SER83 GLN84 ILE85 PRO86 TRP87 GLY88 LYS89 CYS90 GLN91 VAL92 ASP93 VAL94 VAL95 CYS96 GLU97 SER98 THR99 GLY100 VAL101 PHE102 LEU103 THR104 LYS105 GLU106 LEU107 ALA108 SER109 SER110 HIS111 LEU112 LYS113 GLY114 GLY115 ALA116 LYS117 LYS118 VAL119 ILE120 MET121 SER122 ALA123 PRO124 PRO125 LYS126 ASP127 ASP128 THR129 PRO130 ILE131 TYR132 VAL133 MET134 GLY135 ILE136 ASN137 HIS138 HIS139 GLN140 TYR141 ASP142 THR143 LYS144 GLN145 LEU146 ILE147 VAL148 SER149 ASN150 ALA151 SER152 CYS153 THR154 THR155 ASN156 CYS157 LEU158 ALA159 PRO160 LEU161 ALA162 LYS163 VAL164 ILE165 ASN166 ASP167 ARG168 PHE169 GLY170 ILE171 VAL172 GLU173 GLY174 LEU175 MET176 THR177 THR178 VAL179 HIS180 ALA181 SER182 THR183 ALA184 ASN185 GLN186 LEU187 VAL188 VAL189 ASP190 GLY191 PRO192 SER193 LYS194 GLY195 GLY196 LYS197 ASP198 TRP199 ARG200 ALA201 GLY202 ARG203 CYS204 ALA205 LEU206 SER207 ASN208 ILE209 ILE210 PRO211 ALA212 SER213 THR214 GLY215 ALA216 ALA217 LYS218 ALA219 VAL220 GLY221 LYS222 VAL223 LEU224 PRO225 GLU226 LEU227 ASN228 GLY229 LYS230 LEU231 THR232 GLY233 VAL234 ALA235 PHE236 ARG237 VAL238 PRO239 ILE240 GLY241 THR242 VAL243 SER244 VAL245 VAL246 ASP247 LEU248 VAL249 CYS250 ARG251 LEU252 GLN253 LYS254 PRO255 ALA256 LYS257 TYR258 GLU259 GLU260 VAL261 ALA262 LEU263 GLU264 ILE265 LYS266 LYS267 ALA268 ALA269 GLU270 GLY271 PRO272 LEU273 LYS274 GLY275 ILE276 LEU277 GLY278 TYR279 THR280 GLU281 ASP282 GLU283 VAL284 VAL285 SER286 GLN287 ASP288 PHE289 VAL290 HIS291 ASP292 ASN293 ARG294 SER295 SER296 ILE297 PHE298 ASP299 MET300 LYS301 ALA302 GLY303 LEU304 ALA305 LEU306 ASN307 ASP308 ASN309 PHE310 PHE311 LYS312 LEU313 VAL314 SER315 TRP316 TYR317 ASP318 ASN319 GLU320 TRP321 GLY322 TYR323 SER324 ASN325 ARG326 VAL327 LEU328 ASP329 LEU330 ALA331 VAL332 HIS333 ILE334 THR335 THR336
Unit 4 THR4 LYS5 LEU6 GLY7 ILE8 ASN9 GLY10 PHE11 GLY12 ARG13 ILE14 GLY15 ARG16 LEU17 VAL18 PHE19 ARG20 ALA21 ALA22 PHE23 GLY24 ARG25 LYS26 ASP27 ILE28 GLU29 VAL30 VAL31 ALA32 ILE33 ASN34 ASP35 PRO36 PHE37 MET38 ASP39 LEU40 ASN41 HIS42 LEU43 CYS44 TYR45 LEU46 LEU47 LYS48 TYR49 ASP50 SER51 VAL52 HIS53 GLY54 GLN55 PHE56 PRO57 CYS58 GLU59 VAL60 THR61 HIS62 ALA63 ASP64 GLY65 PHE66 LEU67 LEU68 ILE69 GLY70 GLU71 LYS72 LYS73 VAL74 SER75 VAL76 PHE77 ALA78 GLU79 LYS80 ASP81 PRO82 SER83 GLN84 ILE85 PRO86 TRP87 GLY88 LYS89 CYS90 GLN91 VAL92 ASP93 VAL94 VAL95 CYS96 GLU97 SER98 THR99 GLY100 VAL101 PHE102 LEU103 THR104 LYS105 GLU106 LEU107 ALA108 SER109 SER110 HIS111 LEU112 LYS113 GLY114 GLY115 ALA116 LYS117 LYS118 VAL119 ILE120 MET121 SER122 ALA123 PRO124 PRO125 LYS126 ASP127 ASP128 THR129 PRO130 ILE131 TYR132 VAL133 MET134 GLY135 ILE136 ASN137 HIS138 HIS139 GLN140 TYR141 ASP142 THR143 LYS144 GLN145 LEU146 ILE147 VAL148 SER149 ASN150 ALA151 SER152 CYS153 THR154 THR155 ASN156 CYS157 LEU158 ALA159 PRO160 LEU161 ALA162 LYS163 VAL164 ILE165 ASN166 ASP167 ARG168 PHE169 GLY170 ILE171 VAL172 GLU173 GLY174 LEU175 MET176 THR177 THR178 VAL179 HIS180 ALA181 SER182 THR183 ALA184 ASN185 GLN186 LEU187 VAL188 VAL189 ASP190 GLY191 PRO192 SER193 LYS194 GLY195 GLY196 LYS197 ASP198 TRP199 ARG200 ALA201 GLY202 ARG203 CYS204 ALA205 LEU206 SER207 ASN208 ILE209 ILE210 PRO211 ALA212 SER213 THR214 GLY215 ALA216 ALA217 LYS218 ALA219 VAL220 GLY221 LYS222 VAL223 LEU224 PRO225 GLU226 LEU227 ASN228 GLY229 LYS230 LEU231 THR232 GLY233 VAL234 ALA235 PHE236 ARG237 VAL238 PRO239 ILE240 GLY241 THR242 VAL243 SER244 VAL245 VAL246 ASP247 LEU248 VAL249 CYS250 ARG251 LEU252 GLN253 LYS254 PRO255 ALA256 LYS257 TYR258 GLU259 GLU260 VAL261 ALA262 LEU263 GLU264 ILE265 LYS266 LYS267 ALA268 ALA269 GLU270 GLY271 PRO272 LEU273 LYS274 GLY275 ILE276 LEU277 GLY278 TYR279 THR280 GLU281 ASP282 GLU283 VAL284 VAL285 SER286 GLN287 ASP288 PHE289 VAL290 HIS291 ASP292 ASN293 ARG294 SER295 SER296 ILE297 PHE298 ASP299 MET300 LYS301 ALA302 GLY303 LEU304 ALA305 LEU306 ASN307 ASP308 ASN309 PHE310 PHE311 LYS312 LEU313 VAL314 SER315 TRP316 TYR317 ASP318 ASN319 GLU320 TRP321 GLY322 TYR323 SER324 ASN325 ARG326 VAL327 LEU328 ASP329 LEU330 ALA331 VAL332 HIS333 ILE334 THR335 THR336
Ligands
Unit 5 NAD501 AES601
Unit 6 AES602 NAD701
Unit 7 NAD801
Unit 8 AES603 NAD901
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany