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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A BIFUNCTIONAL DEAMINASE AND REDUCTASE IN RIBOFLAVIN BIOSYNTHESIS
Keywords ALPHA/BETA/ALPHA, DEAMINASE DOMAIN AND REDUCTASE DOMAIN, HYD OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2B3Z     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD  A 359 2741 0
2  Protein   RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD  B 359 2741 0
3  Protein   RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD  C 359 2741 0
4  Protein   RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD  D 360 2747 0
5  Ligand   RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD  A 1 0 1
6  Ligand   RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD  B 1 0 1
7  Ligand   RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD  C 1 0 1
8  Ligand   RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD  D 1 0 1
9 Water     293 0 293
total       1734 10970 297
Proteins
Unit 1 MET1 GLU2 GLU3 TYR4 TYR5 MET6 LYS7 LEU8 ALA9 LEU10 ASP11 LEU12 ALA13 LYS14 GLN15 GLY16 GLU17 GLY18 GLN19 THR20 GLU21 SER22 ASN23 PRO24 LEU25 VAL26 GLY27 ALA28 VAL29 VAL30 VAL31 LYS32 ASP33 GLY34 GLN35 ILE36 VAL37 GLY38 MET39 GLY40 ALA41 HIS42 LEU43 LYS44 TYR45 GLY46 GLU47 ALA48 HIS49 ALA50 GLU51 VAL52 HIS53 ALA54 ILE55 HIS56 MET57 ALA58 GLY59 ALA60 HIS61 ALA62 GLU63 GLY64 ALA65 ASP66 ILE67 TYR68 VAL69 THR70 LEU71 GLU72 PRO73 CYS74 SER75 HIS76 TYR77 GLY78 LYS79 THR80 PRO81 PRO82 CYS83 ALA84 GLU85 LEU86 ILE87 ILE88 ASN89 SER90 GLY91 ILE92 LYS93 ARG94 VAL95 PHE96 VAL97 ALA98 MET99 ARG100 ASP101 PRO102 ASN103 PRO104 LEU105 VAL106 ALA107 GLY108 ARG109 GLY110 ILE111 SER112 MET113 MET114 LYS115 GLU116 ALA117 GLY118 ILE119 GLU120 VAL121 ARG122 GLU123 GLY124 ILE125 LEU126 ALA127 ASP128 GLN129 ALA130 GLU131 ARG132 LEU133 ASN134 GLU135 LYS136 PHE137 LEU138 HIS139 PHE140 MET141 ARG142 THR143 GLY144 LEU145 PRO146 TYR147 VAL148 THR149 LEU150 LYS151 ALA152 ALA153 ALA154 SER155 LEU156 ASP157 GLY158 LYS159 ILE160 ALA161 THR162 SER163 THR164 GLY165 ASP166 SER167 LYS168 TRP169 ILE170 THR171 SER172 GLU173 ALA174 ALA175 ARG176 GLN177 ASP178 ALA179 GLN180 GLN181 TYR182 ARG183 LYS184 THR185 HIS186 GLN187 SER188 ILE189 LEU190 VAL191 GLY192 VAL193 GLY194 THR195 VAL196 LYS197 ALA198 ASP199 ASN200 PRO201 SER202 LEU203 THR204 CYS205 ARG206 LEU207 PRO208 ASN209 VAL210 THR211 LYS212 GLN213 PRO214 VAL215 ARG216 VAL217 ILE218 LEU219 ASP220 THR221 VAL222 LEU223 SER224 ILE225 PRO226 GLU227 ASP228 ALA229 LYS230 VAL231 ILE232 CYS233 ASP234 GLN235 ILE236 ALA237 PRO238 THR239 TRP240 ILE241 PHE242 THR243 THR244 ALA245 ARG246 ALA247 ASP248 GLU249 GLU250 LYS251 LYS252 LYS253 ARG254 LEU255 SER256 ALA257 PHE258 GLY259 VAL260 ASN261 ILE262 PHE263 THR264 LEU265 GLU266 THR267 GLU268 ARG269 ILE270 GLN271 ILE272 PRO273 ASP274 VAL275 LEU276 LYS277 ILE278 LEU279 ALA280 GLU281 GLU282 GLY283 ILE284 MET285 SER286 VAL287 TYR288 VAL289 GLU290 GLY291 GLY292 SER293 ALA294 VAL295 HIS296 GLY297 SER298 PHE299 VAL300 LYS301 GLU302 GLY303 CYS304 PHE305 GLN306 GLU307 ILE308 ILE309 PHE310 TYR311 PHE312 ALA313 PRO314 LYS315 LEU316 ILE317 GLY318 GLY319 THR320 HIS321 ALA322 PRO323 SER324 LEU325 ILE326 SER327 GLY328 GLU329 GLY330 PHE331 GLN332 SER333 MET334 LYS335 ASP336 VAL337 PRO338 LEU339 LEU340 GLN341 PHE342 THR343 ASP344 ILE345 THR346 GLN347 ILE348 GLY349 ARG350 ASP351 ILE352 LYS353 LEU354 THR355 ALA356 LYS357 PRO358 THR359
Unit 2 MET1 GLU2 GLU3 TYR4 TYR5 MET6 LYS7 LEU8 ALA9 LEU10 ASP11 LEU12 ALA13 LYS14 GLN15 GLY16 GLU17 GLY18 GLN19 THR20 GLU21 SER22 ASN23 PRO24 LEU25 VAL26 GLY27 ALA28 VAL29 VAL30 VAL31 LYS32 ASP33 GLY34 GLN35 ILE36 VAL37 GLY38 MET39 GLY40 ALA41 HIS42 LEU43 LYS44 TYR45 GLY46 GLU47 ALA48 HIS49 ALA50 GLU51 VAL52 HIS53 ALA54 ILE55 HIS56 MET57 ALA58 GLY59 ALA60 HIS61 ALA62 GLU63 GLY64 ALA65 ASP66 ILE67 TYR68 VAL69 THR70 LEU71 GLU72 PRO73 CYS74 SER75 HIS76 TYR77 GLY78 LYS79 THR80 PRO81 PRO82 CYS83 ALA84 GLU85 LEU86 ILE87 ILE88 ASN89 SER90 GLY91 ILE92 LYS93 ARG94 VAL95 PHE96 VAL97 ALA98 MET99 ARG100 ASP101 PRO102 ASN103 PRO104 LEU105 VAL106 ALA107 GLY108 ARG109 GLY110 ILE111 SER112 MET113 MET114 LYS115 GLU116 ALA117 GLY118 ILE119 GLU120 VAL121 ARG122 GLU123 GLY124 ILE125 LEU126 ALA127 ASP128 GLN129 ALA130 GLU131 ARG132 LEU133 ASN134 GLU135 LYS136 PHE137 LEU138 HIS139 PHE140 MET141 ARG142 THR143 GLY144 LEU145 PRO146 TYR147 VAL148 THR149 LEU150 LYS151 ALA152 ALA153 ALA154 SER155 LEU156 ASP157 GLY158 LYS159 ILE160 ALA161 THR162 SER163 THR164 GLY165 ASP166 SER167 LYS168 TRP169 ILE170 THR171 SER172 GLU173 ALA174 ALA175 ARG176 GLN177 ASP178 ALA179 GLN180 GLN181 TYR182 ARG183 LYS184 THR185 HIS186 GLN187 SER188 ILE189 LEU190 VAL191 GLY192 VAL193 GLY194 THR195 VAL196 LYS197 ALA198 ASP199 ASN200 PRO201 SER202 LEU203 THR204 CYS205 ARG206 LEU207 PRO208 ASN209 VAL210 THR211 LYS212 GLN213 PRO214 VAL215 ARG216 VAL217 ILE218 LEU219 ASP220 THR221 VAL222 LEU223 SER224 ILE225 PRO226 GLU227 ASP228 ALA229 LYS230 VAL231 ILE232 CYS233 ASP234 GLN235 ILE236 ALA237 PRO238 THR239 TRP240 ILE241 PHE242 THR243 THR244 ALA245 ARG246 ALA247 ASP248 GLU249 GLU250 LYS251 LYS252 LYS253 ARG254 LEU255 SER256 ALA257 PHE258 GLY259 VAL260 ASN261 ILE262 PHE263 THR264 LEU265 GLU266 THR267 GLU268 ARG269 ILE270 GLN271 ILE272 PRO273 ASP274 VAL275 LEU276 LYS277 ILE278 LEU279 ALA280 GLU281 GLU282 GLY283 ILE284 MET285 SER286 VAL287 TYR288 VAL289 GLU290 GLY291 GLY292 SER293 ALA294 VAL295 HIS296 GLY297 SER298 PHE299 VAL300 LYS301 GLU302 GLY303 CYS304 PHE305 GLN306 GLU307 ILE308 ILE309 PHE310 TYR311 PHE312 ALA313 PRO314 LYS315 LEU316 ILE317 GLY318 GLY319 THR320 HIS321 ALA322 PRO323 SER324 LEU325 ILE326 SER327 GLY328 GLU329 GLY330 PHE331 GLN332 SER333 MET334 LYS335 ASP336 VAL337 PRO338 LEU339 LEU340 GLN341 PHE342 THR343 ASP344 ILE345 THR346 GLN347 ILE348 GLY349 ARG350 ASP351 ILE352 LYS353 LEU354 THR355 ALA356 LYS357 PRO358 THR359
Unit 3 MET1 GLU2 GLU3 TYR4 TYR5 MET6 LYS7 LEU8 ALA9 LEU10 ASP11 LEU12 ALA13 LYS14 GLN15 GLY16 GLU17 GLY18 GLN19 THR20 GLU21 SER22 ASN23 PRO24 LEU25 VAL26 GLY27 ALA28 VAL29 VAL30 VAL31 LYS32 ASP33 GLY34 GLN35 ILE36 VAL37 GLY38 MET39 GLY40 ALA41 HIS42 LEU43 LYS44 TYR45 GLY46 GLU47 ALA48 HIS49 ALA50 GLU51 VAL52 HIS53 ALA54 ILE55 HIS56 MET57 ALA58 GLY59 ALA60 HIS61 ALA62 GLU63 GLY64 ALA65 ASP66 ILE67 TYR68 VAL69 THR70 LEU71 GLU72 PRO73 CYS74 SER75 HIS76 TYR77 GLY78 LYS79 THR80 PRO81 PRO82 CYS83 ALA84 GLU85 LEU86 ILE87 ILE88 ASN89 SER90 GLY91 ILE92 LYS93 ARG94 VAL95 PHE96 VAL97 ALA98 MET99 ARG100 ASP101 PRO102 ASN103 PRO104 LEU105 VAL106 ALA107 GLY108 ARG109 GLY110 ILE111 SER112 MET113 MET114 LYS115 GLU116 ALA117 GLY118 ILE119 GLU120 VAL121 ARG122 GLU123 GLY124 ILE125 LEU126 ALA127 ASP128 GLN129 ALA130 GLU131 ARG132 LEU133 ASN134 GLU135 LYS136 PHE137 LEU138 HIS139 PHE140 MET141 ARG142 THR143 GLY144 LEU145 PRO146 TYR147 VAL148 THR149 LEU150 LYS151 ALA152 ALA153 ALA154 SER155 LEU156 ASP157 GLY158 LYS159 ILE160 ALA161 THR162 SER163 THR164 GLY165 ASP166 SER167 LYS168 TRP169 ILE170 THR171 SER172 GLU173 ALA174 ALA175 ARG176 GLN177 ASP178 ALA179 GLN180 GLN181 TYR182 ARG183 LYS184 THR185 HIS186 GLN187 SER188 ILE189 LEU190 VAL191 GLY192 VAL193 GLY194 THR195 VAL196 LYS197 ALA198 ASP199 ASN200 PRO201 SER202 LEU203 THR204 CYS205 ARG206 LEU207 PRO208 ASN209 VAL210 THR211 LYS212 GLN213 PRO214 VAL215 ARG216 VAL217 ILE218 LEU219 ASP220 THR221 VAL222 LEU223 SER224 ILE225 PRO226 GLU227 ASP228 ALA229 LYS230 VAL231 ILE232 CYS233 ASP234 GLN235 ILE236 ALA237 PRO238 THR239 TRP240 ILE241 PHE242 THR243 THR244 ALA245 ARG246 ALA247 ASP248 GLU249 GLU250 LYS251 LYS252 LYS253 ARG254 LEU255 SER256 ALA257 PHE258 GLY259 VAL260 ASN261 ILE262 PHE263 THR264 LEU265 GLU266 THR267 GLU268 ARG269 ILE270 GLN271 ILE272 PRO273 ASP274 VAL275 LEU276 LYS277 ILE278 LEU279 ALA280 GLU281 GLU282 GLY283 ILE284 MET285 SER286 VAL287 TYR288 VAL289 GLU290 GLY291 GLY292 SER293 ALA294 VAL295 HIS296 GLY297 SER298 PHE299 VAL300 LYS301 GLU302 GLY303 CYS304 PHE305 GLN306 GLU307 ILE308 ILE309 PHE310 TYR311 PHE312 ALA313 PRO314 LYS315 LEU316 ILE317 GLY318 GLY319 THR320 HIS321 ALA322 PRO323 SER324 LEU325 ILE326 SER327 GLY328 GLU329 GLY330 PHE331 GLN332 SER333 MET334 LYS335 ASP336 VAL337 PRO338 LEU339 LEU340 GLN341 PHE342 THR343 ASP344 ILE345 THR346 GLN347 ILE348 GLY349 ARG350 ASP351 ILE352 LYS353 LEU354 THR355 ALA356 LYS357 PRO358 THR359
Unit 4 SER0 MET1 GLU2 GLU3 TYR4 TYR5 MET6 LYS7 LEU8 ALA9 LEU10 ASP11 LEU12 ALA13 LYS14 GLN15 GLY16 GLU17 GLY18 GLN19 THR20 GLU21 SER22 ASN23 PRO24 LEU25 VAL26 GLY27 ALA28 VAL29 VAL30 VAL31 LYS32 ASP33 GLY34 GLN35 ILE36 VAL37 GLY38 MET39 GLY40 ALA41 HIS42 LEU43 LYS44 TYR45 GLY46 GLU47 ALA48 HIS49 ALA50 GLU51 VAL52 HIS53 ALA54 ILE55 HIS56 MET57 ALA58 GLY59 ALA60 HIS61 ALA62 GLU63 GLY64 ALA65 ASP66 ILE67 TYR68 VAL69 THR70 LEU71 GLU72 PRO73 CYS74 SER75 HIS76 TYR77 GLY78 LYS79 THR80 PRO81 PRO82 CYS83 ALA84 GLU85 LEU86 ILE87 ILE88 ASN89 SER90 GLY91 ILE92 LYS93 ARG94 VAL95 PHE96 VAL97 ALA98 MET99 ARG100 ASP101 PRO102 ASN103 PRO104 LEU105 VAL106 ALA107 GLY108 ARG109 GLY110 ILE111 SER112 MET113 MET114 LYS115 GLU116 ALA117 GLY118 ILE119 GLU120 VAL121 ARG122 GLU123 GLY124 ILE125 LEU126 ALA127 ASP128 GLN129 ALA130 GLU131 ARG132 LEU133 ASN134 GLU135 LYS136 PHE137 LEU138 HIS139 PHE140 MET141 ARG142 THR143 GLY144 LEU145 PRO146 TYR147 VAL148 THR149 LEU150 LYS151 ALA152 ALA153 ALA154 SER155 LEU156 ASP157 GLY158 LYS159 ILE160 ALA161 THR162 SER163 THR164 GLY165 ASP166 SER167 LYS168 TRP169 ILE170 THR171 SER172 GLU173 ALA174 ALA175 ARG176 GLN177 ASP178 ALA179 GLN180 GLN181 TYR182 ARG183 LYS184 THR185 HIS186 GLN187 SER188 ILE189 LEU190 VAL191 GLY192 VAL193 GLY194 THR195 VAL196 LYS197 ALA198 ASP199 ASN200 PRO201 SER202 LEU203 THR204 CYS205 ARG206 LEU207 PRO208 ASN209 VAL210 THR211 LYS212 GLN213 PRO214 VAL215 ARG216 VAL217 ILE218 LEU219 ASP220 THR221 VAL222 LEU223 SER224 ILE225 PRO226 GLU227 ASP228 ALA229 LYS230 VAL231 ILE232 CYS233 ASP234 GLN235 ILE236 ALA237 PRO238 THR239 TRP240 ILE241 PHE242 THR243 THR244 ALA245 ARG246 ALA247 ASP248 GLU249 GLU250 LYS251 LYS252 LYS253 ARG254 LEU255 SER256 ALA257 PHE258 GLY259 VAL260 ASN261 ILE262 PHE263 THR264 LEU265 GLU266 THR267 GLU268 ARG269 ILE270 GLN271 ILE272 PRO273 ASP274 VAL275 LEU276 LYS277 ILE278 LEU279 ALA280 GLU281 GLU282 GLY283 ILE284 MET285 SER286 VAL287 TYR288 VAL289 GLU290 GLY291 GLY292 SER293 ALA294 VAL295 HIS296 GLY297 SER298 PHE299 VAL300 LYS301 GLU302 GLY303 CYS304 PHE305 GLN306 GLU307 ILE308 ILE309 PHE310 TYR311 PHE312 ALA313 PRO314 LYS315 LEU316 ILE317 GLY318 GLY319 THR320 HIS321 ALA322 PRO323 SER324 LEU325 ILE326 SER327 GLY328 GLU329 GLY330 PHE331 GLN332 SER333 MET334 LYS335 ASP336 VAL337 PRO338 LEU339 LEU340 GLN341 PHE342 THR343 ASP344 ILE345 THR346 GLN347 ILE348 GLY349 ARG350 ASP351 ILE352 LYS353 LEU354 THR355 ALA356 LYS357 PRO358 THR359
Ligands
Unit 5 ZN1360
Unit 6 ZN1360
Unit 7 ZN1360
Unit 8 ZN1360
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany