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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF A HALOPHILIC NUCLEOSIDE DIPHOSPHATE KINASE FROM HALOBACTERIUM SALINARUM
Keywords HALOPHILIC, SURFACE CHARGES, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2AZ1     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  A 155 1204 0
2  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  B 151 1157 0
3  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  C 155 1204 0
4  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  D 155 1196 0
5  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  E 154 1164 0
6  Protein   NUCLEOSIDE DIPHOSPHATE KINASE  F 151 1169 0
7  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE  A 1 0 1
8  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE  C 2 0 2
9  Ligand   NUCLEOSIDE DIPHOSPHATE KINASE  D 2 0 2
10 Water     105 0 105
total       1031 7094 110

Proteins
Unit 1 HIS4 ASP5 GLU6 ARG7 THR8 PHE9 VAL10 MET11 VAL12 LYS13 PRO14 ASP15 GLY16 VAL17 GLN18 ARG19 GLY20 LEU21 ILE22 GLY23 ASP24 ILE25 VAL26 THR27 ARG28 LEU29 GLU30 THR31 LYS32 GLY33 LEU34 LYS35 MET36 VAL37 GLY38 GLY39 LYS40 PHE41 MET42 ARG43 ILE44 ASP45 GLU46 GLU47 LEU48 ALA49 HIS50 GLU51 HIS52 TYR53 ALA54 GLU55 HIS56 GLU57 ASP58 LYS59 PRO60 PHE61 PHE62 ASP63 GLY64 LEU65 VAL66 SER67 PHE68 ILE69 THR70 SER71 GLY72 PRO73 VAL74 PHE75 ALA76 MET77 VAL78 TRP79 GLU80 GLY81 ALA82 ASP83 ALA84 THR85 ARG86 GLN87 VAL88 ARG89 GLN90 LEU91 MET92 GLY93 ALA94 THR95 ASP96 ALA97 GLN98 ASP99 ALA100 ALA101 PRO102 GLY103 THR104 ILE105 ARG106 GLY107 ASP108 TYR109 GLY110 ASN111 ASP112 LEU113 GLY114 HIS115 ASN116 LEU117 ILE118 HIS119 GLY120 SER121 ASP122 HIS123 GLU124 ASP125 GLU126 GLY127 ALA128 ASN129 GLU130 ARG131 GLU132 ILE133 ALA134 LEU135 PHE136 PHE137 ASP138 ASP139 ASP140 GLU141 LEU142 VAL143 ASP144 TRP145 ASP146 ARG147 ASP148 ALA149 SER150 ALA151 TRP152 VAL153 TYR154 GLU155 ASP156 LEU157 ALA158
Unit 2 ASP3 HIS4 ASP5 GLU6 ARG7 THR8 PHE9 VAL10 MET11 VAL12 LYS13 PRO14 ASP15 GLY16 VAL17 GLN18 ARG19 GLY20 LEU21 ILE22 GLY23 ASP24 ILE25 VAL26 THR27 ARG28 LEU29 GLU30 THR31 LYS32 GLY33 LEU34 LYS35 MET36 VAL37 GLY38 GLY39 LYS40 PHE41 MET42 ARG43 ILE44 ASP45 GLU46 GLU47 LEU48 ALA49 HIS50 GLU51 HIS52 TYR53 ALA54 GLU55 PHE61 PHE62 ASP63 GLY64 LEU65 VAL66 SER67 PHE68 ILE69 THR70 SER71 GLY72 PRO73 VAL74 PHE75 ALA76 MET77 VAL78 TRP79 GLU80 GLY81 ALA82 ASP83 ALA84 THR85 ARG86 GLN87 VAL88 ARG89 GLN90 LEU91 MET92 GLY93 ALA94 THR95 ASP96 ALA97 GLN98 ASP99 ALA100 ALA101 PRO102 GLY103 THR104 ILE105 ARG106 GLY107 ASP108 TYR109 GLY110 ASN111 ASP112 LEU113 GLY114 HIS115 ASN116 LEU117 ILE118 HIS119 GLY120 SER121 ASP122 HIS123 GLU124 ASP125 GLU126 GLY127 ALA128 ASN129 GLU130 ARG131 GLU132 ILE133 ALA134 LEU135 PHE136 PHE137 ASP138 ASP139 ASP140 GLU141 LEU142 VAL143 ASP144 TRP145 ASP146 ARG147 ASP148 ALA149 SER150 ALA151 TRP152 VAL153 TYR154 GLU155 ASP156 LEU157 ALA158
Unit 3 HIS4 ASP5 GLU6 ARG7 THR8 PHE9 VAL10 MET11 VAL12 LYS13 PRO14 ASP15 GLY16 VAL17 GLN18 ARG19 GLY20 LEU21 ILE22 GLY23 ASP24 ILE25 VAL26 THR27 ARG28 LEU29 GLU30 THR31 LYS32 GLY33 LEU34 LYS35 MET36 VAL37 GLY38 GLY39 LYS40 PHE41 MET42 ARG43 ILE44 ASP45 GLU46 GLU47 LEU48 ALA49 HIS50 GLU51 HIS52 TYR53 ALA54 GLU55 HIS56 GLU57 ASP58 LYS59 PRO60 PHE61 PHE62 ASP63 GLY64 LEU65 VAL66 SER67 PHE68 ILE69 THR70 SER71 GLY72 PRO73 VAL74 PHE75 ALA76 MET77 VAL78 TRP79 GLU80 GLY81 ALA82 ASP83 ALA84 THR85 ARG86 GLN87 VAL88 ARG89 GLN90 LEU91 MET92 GLY93 ALA94 THR95 ASP96 ALA97 GLN98 ASP99 ALA100 ALA101 PRO102 GLY103 THR104 ILE105 ARG106 GLY107 ASP108 TYR109 GLY110 ASN111 ASP112 LEU113 GLY114 HIS115 ASN116 LEU117 ILE118 HIS119 GLY120 SER121 ASP122 HIS123 GLU124 ASP125 GLU126 GLY127 ALA128 ASN129 GLU130 ARG131 GLU132 ILE133 ALA134 LEU135 PHE136 PHE137 ASP138 ASP139 ASP140 GLU141 LEU142 VAL143 ASP144 TRP145 ASP146 ARG147 ASP148 ALA149 SER150 ALA151 TRP152 VAL153 TYR154 GLU155 ASP156 LEU157 ALA158
Unit 4 HIS4 ASP5 GLU6 ARG7 THR8 PHE9 VAL10 MET11 VAL12 LYS13 PRO14 ASP15 GLY16 VAL17 GLN18 ARG19 GLY20 LEU21 ILE22 GLY23 ASP24 ILE25 VAL26 THR27 ARG28 LEU29 GLU30 THR31 LYS32 GLY33 LEU34 LYS35 MET36 VAL37 GLY38 GLY39 LYS40 PHE41 MET42 ARG43 ILE44 ASP45 GLU46 GLU47 LEU48 ALA49 HIS50 GLU51 HIS52 TYR53 ALA54 GLU55 HIS56 GLU57 ASP58 LYS59 PRO60 PHE61 PHE62 ASP63 GLY64 LEU65 VAL66 SER67 PHE68 ILE69 THR70 SER71 GLY72 PRO73 VAL74 PHE75 ALA76 MET77 VAL78 TRP79 GLU80 GLY81 ALA82 ASP83 ALA84 THR85 ARG86 GLN87 VAL88 ARG89 GLN90 LEU91 MET92 GLY93 ALA94 THR95 ASP96 ALA97 GLN98 ASP99 ALA100 ALA101 PRO102 GLY103 THR104 ILE105 ARG106 GLY107 ASP108 TYR109 GLY110 ASN111 ASP112 LEU113 GLY114 HIS115 ASN116 LEU117 ILE118 HIS119 GLY120 SER121 ASP122 HIS123 GLU124 ASP125 GLU126 GLY127 ALA128 ASN129 GLU130 ARG131 GLU132 ILE133 ALA134 LEU135 PHE136 PHE137 ASP138 ASP139 ASP140 GLU141 LEU142 VAL143 ASP144 TRP145 ASP146 ARG147 ASP148 ALA149 SER150 ALA151 TRP152 VAL153 TYR154 GLU155 ASP156 LEU157 ALA158
Unit 5 ASP5 GLU6 ARG7 THR8 PHE9 VAL10 MET11 VAL12 LYS13 PRO14 ASP15 GLY16 VAL17 GLN18 ARG19 GLY20 LEU21 ILE22 GLY23 ASP24 ILE25 VAL26 THR27 ARG28 LEU29 GLU30 THR31 LYS32 GLY33 LEU34 LYS35 MET36 VAL37 GLY38 GLY39 LYS40 PHE41 MET42 ARG43 ILE44 ASP45 GLU46 GLU47 LEU48 ALA49 HIS50 GLU51 HIS52 TYR53 ALA54 GLU55 HIS56 GLU57 ASP58 LYS59 PRO60 PHE61 PHE62 ASP63 GLY64 LEU65 VAL66 SER67 PHE68 ILE69 THR70 SER71 GLY72 PRO73 VAL74 PHE75 ALA76 MET77 VAL78 TRP79 GLU80 GLY81 ALA82 ASP83 ALA84 THR85 ARG86 GLN87 VAL88 ARG89 GLN90 LEU91 MET92 GLY93 ALA94 THR95 ASP96 ALA97 GLN98 ASP99 ALA100 ALA101 PRO102 GLY103 THR104 ILE105 ARG106 GLY107 ASP108 TYR109 GLY110 ASN111 ASP112 LEU113 GLY114 HIS115 ASN116 LEU117 ILE118 HIS119 GLY120 SER121 ASP122 HIS123 GLU124 ASP125 GLU126 GLY127 ALA128 ASN129 GLU130 ARG131 GLU132 ILE133 ALA134 LEU135 PHE136 PHE137 ASP138 ASP139 ASP140 GLU141 LEU142 VAL143 ASP144 TRP145 ASP146 ARG147 ASP148 ALA149 SER150 ALA151 TRP152 VAL153 TYR154 GLU155 ASP156 LEU157 ALA158
Unit 6 ASP3 HIS4 ASP5 GLU6 ARG7 THR8 PHE9 VAL10 MET11 VAL12 LYS13 PRO14 ASP15 GLY16 VAL17 GLN18 ARG19 GLY20 LEU21 ILE22 GLY23 ASP24 ILE25 VAL26 THR27 ARG28 LEU29 GLU30 THR31 LYS32 GLY33 LEU34 LYS35 MET36 VAL37 GLY38 GLY39 LYS40 PHE41 MET42 ARG43 ILE44 ASP45 GLU46 GLU47 LEU48 ALA49 HIS50 GLU51 HIS52 TYR53 ALA54 GLU55 HIS56 PHE62 ASP63 GLY64 LEU65 VAL66 SER67 PHE68 ILE69 THR70 SER71 GLY72 PRO73 VAL74 PHE75 ALA76 MET77 VAL78 TRP79 GLU80 GLY81 ALA82 ASP83 ALA84 THR85 ARG86 GLN87 VAL88 ARG89 GLN90 LEU91 MET92 GLY93 ALA94 THR95 ASP96 ALA97 GLN98 ASP99 ALA100 ALA101 PRO102 GLY103 THR104 ILE105 ARG106 GLY107 ASP108 TYR109 GLY110 ASN111 ASP112 LEU113 GLY114 HIS115 ASN116 LEU117 ILE118 HIS119 GLY120 SER121 ASP122 HIS123 GLU124 ASP125 GLU126 GLY127 ALA128 ASN129 GLU130 ARG131 GLU132 ILE133 ALA134 LEU135 PHE136 PHE137 ASP138 ASP139 ASP140 GLU141 LEU142 VAL143 ASP144 TRP145 ASP146 ARG147 ASP148 ALA149 SER150 ALA151 TRP152 VAL153 TYR154 GLU155 ASP156 LEU157 ALA158

Ligands
Unit 7 CA203
Unit 8 CA201 CA204
Unit 9 CA202 CA205

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany