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Sequence, Chains, Asymmetric and Biological Units

Title PROTAMINE-DNA COMPLEX 2
Keywords DNA,HELIX,NON-HELICAL,TOPOLOGY,TOPOLOGICAL,TOPOLOGICALLY- LINKED, TOPOLOGICALLY NON-LINKED,SIDE-BY-SIDE,STRAIGHT LADDER,TERTIARY STRUCTURE
Experiment theoretical model
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2AWS     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   REPEAT PEPTIDE  A 4 44 0
2  Protein   REPEAT PEPTIDE  B 4 44 0
3  Protein   REPEAT PEPTIDE  G 4 44 0
4  Protein   REPEAT PEPTIDE  H 4 44 0
5  Protein   REPEAT PEPTIDE  Q 4 44 0
6  Protein   REPEAT PEPTIDE  R 4 44 0
7  Protein   REPEAT PEPTIDE  W 4 44 0
8  Protein   REPEAT PEPTIDE  X 4 44 0
9  DNA    C 3 63 0
10  DNA    D 3 60 0
11  DNA    E 3 63 0
12  DNA    F 3 60 0
13  DNA    I 3 63 0
14  DNA    J 3 60 0
15  DNA    K 2 42 0
16  DNA    L 2 40 0
17  DNA    M 4 82 0
18  DNA    N 4 82 0
19  DNA    O 3 63 0
20  DNA    P 4 82 0
21  DNA    S 4 82 0
22  DNA    T 3 60 0
23  DNA    U 3 63 0
24  DNA    V 4 82 0
total       83 1399 0

Proteins
Unit 1 ARG1 ARG2 ARG3 ARG4
Unit 2 ARG1 ARG2 ARG3 ARG4
Unit 3 ARG1 ARG2 ARG3 ARG4
Unit 4 ARG1 ARG2 ARG3 ARG4
Unit 5 ARG1 ARG2 ARG3 ARG4
Unit 6 ARG1 ARG2 ARG3 ARG4
Unit 7 ARG1 ARG2 ARG3 ARG4
Unit 8 ARG1 ARG2 ARG3 ARG4

Nucleic acids
Unit 9 G1 T2 A3
Unit 10 T1 A2 C3
Unit 11 G1 T2 A3
Unit 12 T1 A2 C3
Unit 13 G1 T2 A3
Unit 14 T1 A2 C3
Unit 15 G1 T2
Unit 16 A1 C2
Unit 17 G1 T2 A3 C4
Unit 18 G1 T2 A3 C4
Unit 19 G1 T2 A3
Unit 20 T1 A2 C3 G4
Unit 21 G1 T2 A3 C4
Unit 22 T1 A2 C3
Unit 23 G1 T2 A3
Unit 24 T1 A2 C3 G4

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany