[Image Library Home] | [Image Library Entry] |
Title | BASE-TETRAD SWAPPING RESULTS IN DIMERIZATION OF RNA QUADRUPLEXES: IMPLICATIONS FOR FORMATION OF I-MOTIF RNA OCTAPLEX | |
Keywords | RNA, TETRAPLEX, OCTAPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2AWE | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | A | 6 | 103 | 23 | |
2 | RNA | B | 6 | 103 | 23 | |
3 | RNA | C | 6 | 103 | 23 | |
4 | RNA | D | 6 | 103 | 23 | |
5 | RNA | E | 6 | 103 | 23 | |
6 | RNA | F | 6 | 103 | 23 | |
7 | DNA/RNA | G | 6 | 87 | 23 | |
8 | RNA | H | 6 | 103 | 23 | |
9 | Ligand | 5'-R(*UP*(BGM)P*GP*UP*GP*U)-3' | A | 6 | 0 | 6 |
10 | Ligand | 5'-R(*UP*(BGM)P*GP*UP*GP*U)-3' | C | 1 | 0 | 1 |
11 | Ligand | 5'-R(*UP*(BGM)P*GP*UP*GP*U)-3' | E | 3 | 0 | 3 |
12 | Ligand | 5'-R(*UP*(BGM)P*GP*UP*GP*U)-3' | F | 1 | 0 | 1 |
13 | Ligand | 5'-R(*UP*(BGM)P*GP*UP*GP*U)-3' | G | 1 | 0 | 1 |
14 | Water | 182 | 0 | 182 | ||
total | 242 | 808 | 378 |
Unit 1 | U1 BGM2 G3 U4 G5 U6 |
Unit 2 | U1 BGM2 G3 U4 G5 U6 |
Unit 3 | U1 BGM2 G3 U4 G5 U6 |
Unit 4 | U1 BGM2 G3 U4 G5 U6 |
Unit 5 | U1 BGM2 G3 U4 G5 U6 |
Unit 6 | U1 BGM2 G3 U4 G5 U6 |
Unit 7 | U1 BGM2 G3 U4 G5 U6 |
Unit 8 | U1 BGM2 G3 U4 G5 U6 |
Unit 9 | K211 K212 K213 K214 K215 SR219 |
Unit 10 | K220 |
Unit 11 | K216 K217 K218 |
Unit 12 | K221 |
Unit 13 | K222 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |