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Sequence, Chains, Asymmetric and Biological Units

Title BASE-TETRAD SWAPPING RESULTS IN DIMERIZATION OF RNA QUADRUPLEXES: IMPLICATIONS FOR FORMATION OF I-MOTIF RNA OCTAPLEX
Keywords RNA, TETRAPLEX, OCTAPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2AWE     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 6 103 23
2  RNA    B 6 103 23
3  RNA    C 6 103 23
4  RNA    D 6 103 23
5  RNA    E 6 103 23
6  RNA    F 6 103 23
7  DNA/RNA    G 6 87 23
8  RNA    H 6 103 23
9  Ligand   5'-R(*UP*(BGM)P*GP*UP*GP*U)-3'  A 6 0 6
10  Ligand   5'-R(*UP*(BGM)P*GP*UP*GP*U)-3'  C 1 0 1
11  Ligand   5'-R(*UP*(BGM)P*GP*UP*GP*U)-3'  E 3 0 3
12  Ligand   5'-R(*UP*(BGM)P*GP*UP*GP*U)-3'  F 1 0 1
13  Ligand   5'-R(*UP*(BGM)P*GP*UP*GP*U)-3'  G 1 0 1
14 Water     182 0 182
total       242 808 378

Nucleic acids
Unit 1 U1 BGM2 G3 U4 G5 U6
Unit 2 U1 BGM2 G3 U4 G5 U6
Unit 3 U1 BGM2 G3 U4 G5 U6
Unit 4 U1 BGM2 G3 U4 G5 U6
Unit 5 U1 BGM2 G3 U4 G5 U6
Unit 6 U1 BGM2 G3 U4 G5 U6
Unit 7 U1 BGM2 G3 U4 G5 U6
Unit 8 U1 BGM2 G3 U4 G5 U6

Ligands
Unit 9 K211 K212 K213 K214 K215 SR219
Unit 10 K220
Unit 11 K216 K217 K218
Unit 12 K221
Unit 13 K222

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany