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Sequence, Chains, Asymmetric and Biological Units

Title UNMODIFIED INSERTION TERNARY COMPLEX
Keywords DNA POLYMERASE, Y-FAMILY, LESION BYPASS, TRANSFERASE-DNA COM
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Other macromolecule    D 13 251 21
2  Other macromolecule   5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))- CHAIN: D, H5'-D(*CP*T*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP C)-3'  E 17 337 0
3  Other macromolecule    H 13 251 21
4  Other macromolecule   5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))- CHAIN: D, H5'-D(*CP*T*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP C)-3'  J 19 376 0
5  Protein   DPO4 POLYMERASE IV  A 341 2739 0
6  Protein   DPO4 POLYMERASE IV  B 341 2739 0
7  Ligand    D 1 0 1
8  Ligand    H 1 0 1
9  Ligand   DPO4 POLYMERASE IV  A 4 0 31
10  Ligand   DPO4 POLYMERASE IV  B 4 0 31
11 Water     147 0 147
total       901 6693 253

Proteins
Unit 5 GLY1 ILE2 VAL3 LEU4 PHE5 VAL6 ASP7 PHE8 ASP9 TYR10 PHE11 TYR12 ALA13 GLN14 VAL15 GLU16 GLU17 VAL18 LEU19 ASN20 PRO21 SER22 LEU23 LYS24 GLY25 LYS26 PRO27 VAL28 VAL29 VAL30 CYS31 VAL32 PHE33 SER34 GLY35 ARG36 PHE37 GLU38 ASP39 SER40 GLY41 ALA42 VAL43 ALA44 THR45 ALA46 ASN47 TYR48 GLU49 ALA50 ARG51 LYS52 PHE53 GLY54 VAL55 LYS56 ALA57 GLY58 ILE59 PRO60 ILE61 VAL62 GLU63 ALA64 LYS65 LYS66 ILE67 LEU68 PRO69 ASN70 ALA71 VAL72 TYR73 LEU74 PRO75 MET76 ARG77 LYS78 GLU79 VAL80 TYR81 GLN82 GLN83 VAL84 SER85 SER86 ARG87 ILE88 MET89 ASN90 LEU91 LEU92 ARG93 GLU94 TYR95 SER96 GLU97 LYS98 ILE99 GLU100 ILE101 ALA102 SER103 ILE104 ASP105 GLU106 ALA107 TYR108 LEU109 ASP110 ILE111 SER112 ASP113 LYS114 VAL115 ARG116 ASP117 TYR118 ARG119 GLU120 ALA121 TYR122 ASN123 LEU124 GLY125 LEU126 GLU127 ILE128 LYS129 ASN130 LYS131 ILE132 LEU133 GLU134 LYS135 GLU136 LYS137 ILE138 THR139 VAL140 THR141 VAL142 GLY143 ILE144 SER145 LYS146 ASN147 LYS148 VAL149 PHE150 ALA151 LYS152 ILE153 ALA154 ALA155 ASP156 MET157 ALA158 LYS159 PRO160 ASN161 GLY162 ILE163 LYS164 VAL165 ILE166 ASP167 ASP168 GLU169 GLU170 VAL171 LYS172 ARG173 LEU174 ILE175 ARG176 GLU177 LEU178 ASP179 ILE180 ALA181 ASP182 VAL183 PRO184 GLY185 ILE186 GLY187 ASN188 ILE189 THR190 ALA191 GLU192 LYS193 LEU194 LYS195 LYS196 LEU197 GLY198 ILE199 ASN200 LYS201 LEU202 VAL203 ASP204 THR205 LEU206 SER207 ILE208 GLU209 PHE210 ASP211 LYS212 LEU213 LYS214 GLY215 MET216 ILE217 GLY218 GLU219 ALA220 LYS221 ALA222 LYS223 TYR224 LEU225 ILE226 SER227 LEU228 ALA229 ARG230 ASP231 GLU232 TYR233 ASN234 GLU235 PRO236 ILE237 ARG238 THR239 ARG240 VAL241 ARG242 LYS243 SER244 ILE245 GLY246 ARG247 ILE248 VAL249 THR250 MET251 LYS252 ARG253 ASN254 SER255 ARG256 ASN257 LEU258 GLU259 GLU260 ILE261 LYS262 PRO263 TYR264 LEU265 PHE266 ARG267 ALA268 ILE269 GLU270 GLU271 SER272 TYR273 TYR274 LYS275 LEU276 ASP277 LYS278 ARG279 ILE280 PRO281 LYS282 ALA283 ILE284 HIS285 VAL286 VAL287 ALA288 VAL289 THR290 GLU291 ASP292 LEU293 ASP294 ILE295 VAL296 SER297 ARG298 GLY299 ARG300 THR301 PHE302 PRO303 HIS304 GLY305 ILE306 SER307 LYS308 GLU309 THR310 ALA311 TYR312 SER313 GLU314 SER315 VAL316 LYS317 LEU318 LEU319 GLN320 LYS321 ILE322 LEU323 GLU324 GLU325 ASP326 GLU327 ARG328 LYS329 ILE330 ARG331 ARG332 ILE333 GLY334 VAL335 ARG336 PHE337 SER338 LYS339 PHE340 ILE341
Unit 6 GLY1001 ILE1002 VAL1003 LEU1004 PHE1005 VAL1006 ASP1007 PHE1008 ASP1009 TYR1010 PHE1011 TYR1012 ALA1013 GLN1014 VAL1015 GLU1016 GLU1017 VAL1018 LEU1019 ASN1020 PRO1021 SER1022 LEU1023 LYS1024 GLY1025 LYS1026 PRO1027 VAL1028 VAL1029 VAL1030 CYS1031 VAL1032 PHE1033 SER1034 GLY1035 ARG1036 PHE1037 GLU1038 ASP1039 SER1040 GLY1041 ALA1042 VAL1043 ALA1044 THR1045 ALA1046 ASN1047 TYR1048 GLU1049 ALA1050 ARG1051 LYS1052 PHE1053 GLY1054 VAL1055 LYS1056 ALA1057 GLY1058 ILE1059 PRO1060 ILE1061 VAL1062 GLU1063 ALA1064 LYS1065 LYS1066 ILE1067 LEU1068 PRO1069 ASN1070 ALA1071 VAL1072 TYR1073 LEU1074 PRO1075 MET1076 ARG1077 LYS1078 GLU1079 VAL1080 TYR1081 GLN1082 GLN1083 VAL1084 SER1085 SER1086 ARG1087 ILE1088 MET1089 ASN1090 LEU1091 LEU1092 ARG1093 GLU1094 TYR1095 SER1096 GLU1097 LYS1098 ILE1099 GLU1100 ILE1101 ALA1102 SER1103 ILE1104 ASP1105 GLU1106 ALA1107 TYR1108 LEU1109 ASP1110 ILE1111 SER1112 ASP1113 LYS1114 VAL1115 ARG1116 ASP1117 TYR1118 ARG1119 GLU1120 ALA1121 TYR1122 ASN1123 LEU1124 GLY1125 LEU1126 GLU1127 ILE1128 LYS1129 ASN1130 LYS1131 ILE1132 LEU1133 GLU1134 LYS1135 GLU1136 LYS1137 ILE1138 THR1139 VAL1140 THR1141 VAL1142 GLY1143 ILE1144 SER1145 LYS1146 ASN1147 LYS1148 VAL1149 PHE1150 ALA1151 LYS1152 ILE1153 ALA1154 ALA1155 ASP1156 MET1157 ALA1158 LYS1159 PRO1160 ASN1161 GLY1162 ILE1163 LYS1164 VAL1165 ILE1166 ASP1167 ASP1168 GLU1169 GLU1170 VAL1171 LYS1172 ARG1173 LEU1174 ILE1175 ARG1176 GLU1177 LEU1178 ASP1179 ILE1180 ALA1181 ASP1182 VAL1183 PRO1184 GLY1185 ILE1186 GLY1187 ASN1188 ILE1189 THR1190 ALA1191 GLU1192 LYS1193 LEU1194 LYS1195 LYS1196 LEU1197 GLY1198 ILE1199 ASN1200 LYS1201 LEU1202 VAL1203 ASP1204 THR1205 LEU1206 SER1207 ILE1208 GLU1209 PHE1210 ASP1211 LYS1212 LEU1213 LYS1214 GLY1215 MET1216 ILE1217 GLY1218 GLU1219 ALA1220 LYS1221 ALA1222 LYS1223 TYR1224 LEU1225 ILE1226 SER1227 LEU1228 ALA1229 ARG1230 ASP1231 GLU1232 TYR1233 ASN1234 GLU1235 PRO1236 ILE1237 ARG1238 THR1239 ARG1240 VAL1241 ARG1242 LYS1243 SER1244 ILE1245 GLY1246 ARG1247 ILE1248 VAL1249 THR1250 MET1251 LYS1252 ARG1253 ASN1254 SER1255 ARG1256 ASN1257 LEU1258 GLU1259 GLU1260 ILE1261 LYS1262 PRO1263 TYR1264 LEU1265 PHE1266 ARG1267 ALA1268 ILE1269 GLU1270 GLU1271 SER1272 TYR1273 TYR1274 LYS1275 LEU1276 ASP1277 LYS1278 ARG1279 ILE1280 PRO1281 LYS1282 ALA1283 ILE1284 HIS1285 VAL1286 VAL1287 ALA1288 VAL1289 THR1290 GLU1291 ASP1292 LEU1293 ASP1294 ILE1295 VAL1296 SER1297 ARG1298 GLY1299 ARG1300 THR1301 PHE1302 PRO1303 HIS1304 GLY1305 ILE1306 SER1307 LYS1308 GLU1309 THR1310 ALA1311 TYR1312 SER1313 GLU1314 SER1315 VAL1316 LYS1317 LEU1318 LEU1319 GLN1320 LYS1321 ILE1322 LEU1323 GLU1324 GLU1325 ASP1326 GLU1327 ARG1328 LYS1329 ILE1330 ARG1331 ARG1332 ILE1333 GLY1334 VAL1335 ARG1336 PHE1337 SER1338 LYS1339 PHE1340 ILE1341

Other macromolecules
Unit 1 DG801 DG802 DT803 DT804 DG805 DG806 DA807 DT808 DG809 DG810 DT811 DA812 DDG813
Unit 2 DA903 DA904 DC905 DG906 DC907 DT908 DA909 DC910 DC911 DA912 DT913 DC914 DC915 DA916 DA917 DC918 DC919
Unit 3 DG1801 DG1802 DT1803 DT1804 DG1805 DG1806 DA1807 DT1808 DG1809 DG1810 DT1811 DA1812 DDG1813
Unit 4 DC1901 DT1902 DA1903 DA1904 DC1905 DG1906 DC1907 DT1908 DA1909 DC1910 DC1911 DA1912 DT1913 DC1914 DC1915 DA1916 DA1917 DC1918 DC1919

Ligands
Unit 7 CA418
Unit 8 CA1418
Unit 9 DCP414 CA415 CA416 CA417
Unit 10 DCP1414 CA1415 CA1416 CA1417

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany