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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF QUEUINE TRNA-RIBOSYLTRANSFERASE (EC 2.4 (TRNA-GUANINE (TM1561) FROM THERMOTOGA MARITIMA AT 1.90 A R
Keywords TM1561, QUEUINE TRNA-RIBOSYLTRANSFERASE, TRNA-GUANINE, STRUC GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTE STRUCTURE INITIATIVE, PSI, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2ASH     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   QUEUINE TRNA-RIBOSYLTRANSFERASE  A 361 2767 0
2  Protein   QUEUINE TRNA-RIBOSYLTRANSFERASE  B 360 2778 0
3  Protein   QUEUINE TRNA-RIBOSYLTRANSFERASE  C 361 2741 0
4  Protein   QUEUINE TRNA-RIBOSYLTRANSFERASE  D 361 2784 0
5  Ligand   QUEUINE TRNA-RIBOSYLTRANSFERASE  A 6 0 15
6  Ligand   QUEUINE TRNA-RIBOSYLTRANSFERASE  B 2 0 5
7  Ligand   QUEUINE TRNA-RIBOSYLTRANSFERASE  C 7 0 19
8  Ligand   QUEUINE TRNA-RIBOSYLTRANSFERASE  D 4 0 10
9 Water     655 0 655
total       2117 11070 704
Proteins
Unit 1 MET1 GLU2 PHE3 GLU4 VAL5 LYS6 LYS7 THR8 PHE9 GLY10 LYS11 ALA12 ARG13 LEU14 GLY15 VAL16 MET17 LYS18 LEU19 HIS20 HIS21 GLY22 ALA23 VAL24 GLU25 THR26 PRO27 VAL28 PHE29 MET30 PRO31 VAL32 GLY33 THR34 ASN35 ALA36 SER37 VAL38 LYS39 LEU40 LEU41 THR42 PRO43 ARG44 ASP45 LEU46 GLU47 GLU48 ALA49 GLY50 ALA51 GLU52 ILE53 ILE54 LEU55 SER56 ASN57 THR58 PHE59 HIS60 LEU61 MET62 LEU63 LYS64 PRO65 GLY66 VAL67 GLU68 ILE69 ILE70 LYS71 LEU72 HIS73 ARG74 GLY75 LEU76 HIS77 ASN78 PHE79 MET80 GLY81 TRP82 LYS83 ARG84 PRO85 ILE86 LEU87 THR88 ASP89 SER90 GLY91 GLY92 PHE93 GLN94 VAL95 PHE96 SER97 LEU98 PRO99 LYS100 ILE101 ARG102 ILE103 ASP104 ASP105 GLU106 GLY107 VAL108 VAL109 PHE110 ARG111 SER112 PRO113 ILE114 ASP115 GLY116 SER117 LYS118 VAL119 PHE120 LEU121 ASN122 PRO123 GLU124 ILE125 SER126 MET127 GLU128 VAL129 GLN130 ILE131 ALA132 LEU133 GLY134 SER135 ASP136 ILE137 CYS138 MET139 VAL140 PHE141 ASP142 HIS143 CYS144 PRO145 VAL146 ALA149 ASP150 TYR151 GLU152 GLU153 VAL154 LYS155 GLU156 ALA157 THR158 GLU159 ARG160 THR161 TYR162 ARG163 TRP164 ALA165 LEU166 ARG167 SER168 LYS169 LYS170 ALA171 PHE172 LYS173 THR174 GLU175 ASN176 GLN177 ALA178 LEU179 PHE180 GLY181 ILE182 VAL183 GLN184 GLY185 GLY186 ILE187 TYR188 PRO189 ASP190 LEU191 ARG192 ARG193 GLU194 SER195 ALA196 LEU197 GLN198 LEU199 THR200 SER201 ILE202 GLY203 PHE204 ASP205 GLY206 TYR207 ALA208 ILE209 GLY210 GLY211 LEU212 SER213 ILE214 GLY215 GLU216 GLU217 ARG218 SER219 LEU220 THR221 LEU222 GLU223 MET224 THR225 GLU226 VAL227 THR228 VAL229 GLU230 PHE231 LEU232 PRO233 GLU234 ASP235 LYS236 PRO237 ARG238 TYR239 PHE240 MET241 GLY242 GLY243 GLY244 SER245 PRO246 GLU247 LEU248 ILE249 LEU250 GLU251 LEU252 VAL253 ASP254 ARG255 GLY256 VAL257 ASP258 MET259 PHE260 ASP261 SER262 VAL263 PHE264 PRO265 THR266 ARG267 ILE268 ALA269 ARG270 HIS271 GLY272 THR273 ALA274 LEU275 THR276 TRP277 ASN278 GLY279 LYS280 LEU281 ASN282 LEU283 LYS284 ALA285 SER286 TYR287 ASN288 LYS289 ARG290 SER291 LEU292 GLU293 PRO294 VAL295 ASP296 GLU297 ARG298 CYS299 GLY300 CYS301 TYR302 THR303 CYS304 LYS305 ASN306 PHE307 THR308 ARG309 SER310 TYR311 ILE312 HIS313 HIS314 LEU315 PHE316 ASP317 ARG318 GLY319 GLU320 VAL321 LEU322 GLY323 GLN324 ILE325 LEU326 LEU327 THR328 ILE329 HIS330 ASN331 ILE332 ASN333 PHE334 MET335 ILE336 SER337 LEU338 MET339 LYS340 GLU341 VAL342 ARG343 ARG344 SER345 ILE346 GLU347 SER348 GLY349 THR350 PHE351 LYS352 GLU353 LEU354 LYS355 SER356 LYS357 VAL358 VAL359 GLU360 VAL361 TYR362 SER363
Unit 2 GLU2 PHE3 GLU4 VAL5 LYS6 LYS7 THR8 PHE9 GLY10 LYS11 ALA12 ARG13 LEU14 GLY15 VAL16 MET17 LYS18 LEU19 HIS20 HIS21 GLY22 ALA23 VAL24 GLU25 THR26 PRO27 VAL28 PHE29 MET30 PRO31 VAL32 GLY33 THR34 ASN35 ALA36 SER37 VAL38 LYS39 LEU40 LEU41 THR42 PRO43 ARG44 ASP45 LEU46 GLU47 GLU48 ALA49 GLY50 ALA51 GLU52 ILE53 ILE54 LEU55 SER56 ASN57 THR58 PHE59 HIS60 LEU61 MET62 LEU63 LYS64 PRO65 GLY66 VAL67 GLU68 ILE69 ILE70 LYS71 LEU72 HIS73 ARG74 GLY75 LEU76 HIS77 ASN78 PHE79 MET80 GLY81 TRP82 LYS83 ARG84 PRO85 ILE86 LEU87 THR88 ASP89 SER90 GLY91 GLY92 PHE93 GLN94 VAL95 PHE96 SER97 LEU98 PRO99 LYS100 ILE101 ARG102 ILE103 ASP104 ASP105 GLU106 GLY107 VAL108 VAL109 PHE110 ARG111 SER112 PRO113 ILE114 ASP115 GLY116 SER117 LYS118 VAL119 PHE120 LEU121 ASN122 PRO123 GLU124 ILE125 SER126 MET127 GLU128 VAL129 GLN130 ILE131 ALA132 LEU133 GLY134 SER135 ASP136 ILE137 CYS138 MET139 VAL140 PHE141 ASP142 HIS143 CYS144 PRO145 VAL146 ALA149 ASP150 TYR151 GLU152 GLU153 VAL154 LYS155 GLU156 ALA157 THR158 GLU159 ARG160 THR161 TYR162 ARG163 TRP164 ALA165 LEU166 ARG167 SER168 LYS169 LYS170 ALA171 PHE172 LYS173 THR174 GLU175 ASN176 GLN177 ALA178 LEU179 PHE180 GLY181 ILE182 VAL183 GLN184 GLY185 GLY186 ILE187 TYR188 PRO189 ASP190 LEU191 ARG192 ARG193 GLU194 SER195 ALA196 LEU197 GLN198 LEU199 THR200 SER201 ILE202 GLY203 PHE204 ASP205 GLY206 TYR207 ALA208 ILE209 GLY210 GLY211 LEU212 SER213 ILE214 GLY215 GLU216 GLU217 ARG218 SER219 LEU220 THR221 LEU222 GLU223 MET224 THR225 GLU226 VAL227 THR228 VAL229 GLU230 PHE231 LEU232 PRO233 GLU234 ASP235 LYS236 PRO237 ARG238 TYR239 PHE240 MET241 GLY242 GLY243 GLY244 SER245 PRO246 GLU247 LEU248 ILE249 LEU250 GLU251 LEU252 VAL253 ASP254 ARG255 GLY256 VAL257 ASP258 MET259 PHE260 ASP261 SER262 VAL263 PHE264 PRO265 THR266 ARG267 ILE268 ALA269 ARG270 HIS271 GLY272 THR273 ALA274 LEU275 THR276 TRP277 ASN278 GLY279 LYS280 LEU281 ASN282 LEU283 LYS284 ALA285 SER286 TYR287 ASN288 LYS289 ARG290 SER291 LEU292 GLU293 PRO294 VAL295 ASP296 GLU297 ARG298 CYS299 GLY300 CYS301 TYR302 THR303 CYS304 LYS305 ASN306 PHE307 THR308 ARG309 SER310 TYR311 ILE312 HIS313 HIS314 LEU315 PHE316 ASP317 ARG318 GLY319 GLU320 VAL321 LEU322 GLY323 GLN324 ILE325 LEU326 LEU327 THR328 ILE329 HIS330 ASN331 ILE332 ASN333 PHE334 MET335 ILE336 SER337 LEU338 MET339 LYS340 GLU341 VAL342 ARG343 ARG344 SER345 ILE346 GLU347 SER348 GLY349 THR350 PHE351 LYS352 GLU353 LEU354 LYS355 SER356 LYS357 VAL358 VAL359 GLU360 VAL361 TYR362 SER363
Unit 3 MET1 GLU2 PHE3 GLU4 VAL5 LYS6 LYS7 THR8 PHE9 GLY10 LYS11 ALA12 ARG13 LEU14 GLY15 VAL16 MET17 LYS18 LEU19 HIS20 HIS21 GLY22 ALA23 VAL24 GLU25 THR26 PRO27 VAL28 PHE29 MET30 PRO31 VAL32 GLY33 THR34 ASN35 ALA36 SER37 VAL38 LYS39 LEU40 LEU41 THR42 PRO43 ARG44 ASP45 LEU46 GLU47 GLU48 ALA49 GLY50 ALA51 GLU52 ILE53 ILE54 LEU55 SER56 ASN57 THR58 PHE59 HIS60 LEU61 MET62 LEU63 LYS64 PRO65 GLY66 VAL67 GLU68 ILE69 ILE70 LYS71 LEU72 HIS73 ARG74 GLY75 LEU76 HIS77 ASN78 PHE79 MET80 GLY81 TRP82 LYS83 ARG84 PRO85 ILE86 LEU87 THR88 ASP89 SER90 GLY91 GLY92 PHE93 GLN94 VAL95 PHE96 SER97 LEU98 PRO99 LYS100 ILE101 ARG102 ILE103 ASP104 ASP105 GLU106 GLY107 VAL108 VAL109 PHE110 ARG111 SER112 PRO113 ILE114 ASP115 GLY116 SER117 LYS118 VAL119 PHE120 LEU121 ASN122 PRO123 GLU124 ILE125 SER126 MET127 GLU128 VAL129 GLN130 ILE131 ALA132 LEU133 GLY134 SER135 ASP136 ILE137 CYS138 MET139 VAL140 PHE141 ASP142 HIS143 CYS144 PRO145 VAL146 ALA149 ASP150 TYR151 GLU152 GLU153 VAL154 LYS155 GLU156 ALA157 THR158 GLU159 ARG160 THR161 TYR162 ARG163 TRP164 ALA165 LEU166 ARG167 SER168 LYS169 LYS170 ALA171 PHE172 LYS173 THR174 GLU175 ASN176 GLN177 ALA178 LEU179 PHE180 GLY181 ILE182 VAL183 GLN184 GLY185 GLY186 ILE187 TYR188 PRO189 ASP190 LEU191 ARG192 ARG193 GLU194 SER195 ALA196 LEU197 GLN198 LEU199 THR200 SER201 ILE202 GLY203 PHE204 ASP205 GLY206 TYR207 ALA208 ILE209 GLY210 GLY211 LEU212 SER213 ILE214 GLY215 GLU216 GLU217 ARG218 SER219 LEU220 THR221 LEU222 GLU223 MET224 THR225 GLU226 VAL227 THR228 VAL229 GLU230 PHE231 LEU232 PRO233 GLU234 ASP235 LYS236 PRO237 ARG238 TYR239 PHE240 MET241 GLY242 GLY243 GLY244 SER245 PRO246 GLU247 LEU248 ILE249 LEU250 GLU251 LEU252 VAL253 ASP254 ARG255 GLY256 VAL257 ASP258 MET259 PHE260 ASP261 SER262 VAL263 PHE264 PRO265 THR266 ARG267 ILE268 ALA269 ARG270 HIS271 GLY272 THR273 ALA274 LEU275 THR276 TRP277 ASN278 GLY279 LYS280 LEU281 ASN282 LEU283 LYS284 ALA285 SER286 TYR287 ASN288 LYS289 ARG290 SER291 LEU292 GLU293 PRO294 VAL295 ASP296 GLU297 ARG298 CYS299 GLY300 CYS301 TYR302 THR303 CYS304 LYS305 ASN306 PHE307 THR308 ARG309 SER310 TYR311 ILE312 HIS313 HIS314 LEU315 PHE316 ASP317 ARG318 GLY319 GLU320 VAL321 LEU322 GLY323 GLN324 ILE325 LEU326 LEU327 THR328 ILE329 HIS330 ASN331 ILE332 ASN333 PHE334 MET335 ILE336 SER337 LEU338 MET339 LYS340 GLU341 VAL342 ARG343 ARG344 SER345 ILE346 GLU347 SER348 GLY349 THR350 PHE351 LYS352 GLU353 LEU354 LYS355 SER356 LYS357 VAL358 VAL359 GLU360 VAL361 TYR362 SER363
Unit 4 MET1 GLU2 PHE3 GLU4 VAL5 LYS6 LYS7 THR8 PHE9 GLY10 LYS11 ALA12 ARG13 LEU14 GLY15 VAL16 MET17 LYS18 LEU19 HIS20 HIS21 GLY22 ALA23 VAL24 GLU25 THR26 PRO27 VAL28 PHE29 MET30 PRO31 VAL32 GLY33 THR34 ASN35 ALA36 SER37 VAL38 LYS39 LEU40 LEU41 THR42 PRO43 ARG44 ASP45 LEU46 GLU47 GLU48 ALA49 GLY50 ALA51 GLU52 ILE53 ILE54 LEU55 SER56 ASN57 THR58 PHE59 HIS60 LEU61 MET62 LEU63 LYS64 PRO65 GLY66 VAL67 GLU68 ILE69 ILE70 LYS71 LEU72 HIS73 ARG74 GLY75 LEU76 HIS77 ASN78 PHE79 MET80 GLY81 TRP82 LYS83 ARG84 PRO85 ILE86 LEU87 THR88 ASP89 SER90 GLY91 GLY92 PHE93 GLN94 VAL95 PHE96 SER97 LEU98 PRO99 LYS100 ILE101 ARG102 ILE103 ASP104 ASP105 GLU106 GLY107 VAL108 VAL109 PHE110 ARG111 SER112 PRO113 ILE114 ASP115 GLY116 SER117 LYS118 VAL119 PHE120 LEU121 ASN122 PRO123 GLU124 ILE125 SER126 MET127 GLU128 VAL129 GLN130 ILE131 ALA132 LEU133 GLY134 SER135 ASP136 ILE137 CYS138 MET139 VAL140 PHE141 ASP142 HIS143 CYS144 PRO145 VAL146 ALA149 ASP150 TYR151 GLU152 GLU153 VAL154 LYS155 GLU156 ALA157 THR158 GLU159 ARG160 THR161 TYR162 ARG163 TRP164 ALA165 LEU166 ARG167 SER168 LYS169 LYS170 ALA171 PHE172 LYS173 THR174 GLU175 ASN176 GLN177 ALA178 LEU179 PHE180 GLY181 ILE182 VAL183 GLN184 GLY185 GLY186 ILE187 TYR188 PRO189 ASP190 LEU191 ARG192 ARG193 GLU194 SER195 ALA196 LEU197 GLN198 LEU199 THR200 SER201 ILE202 GLY203 PHE204 ASP205 GLY206 TYR207 ALA208 ILE209 GLY210 GLY211 LEU212 SER213 ILE214 GLY215 GLU216 GLU217 ARG218 SER219 LEU220 THR221 LEU222 GLU223 MET224 THR225 GLU226 VAL227 THR228 VAL229 GLU230 PHE231 LEU232 PRO233 GLU234 ASP235 LYS236 PRO237 ARG238 TYR239 PHE240 MET241 GLY242 GLY243 GLY244 SER245 PRO246 GLU247 LEU248 ILE249 LEU250 GLU251 LEU252 VAL253 ASP254 ARG255 GLY256 VAL257 ASP258 MET259 PHE260 ASP261 SER262 VAL263 PHE264 PRO265 THR266 ARG267 ILE268 ALA269 ARG270 HIS271 GLY272 THR273 ALA274 LEU275 THR276 TRP277 ASN278 GLY279 LYS280 LEU281 ASN282 LEU283 LYS284 ALA285 SER286 TYR287 ASN288 LYS289 ARG290 SER291 LEU292 GLU293 PRO294 VAL295 ASP296 GLU297 ARG298 CYS299 GLY300 CYS301 TYR302 THR303 CYS304 LYS305 ASN306 PHE307 THR308 ARG309 SER310 TYR311 ILE312 HIS313 HIS314 LEU315 PHE316 ASP317 ARG318 GLY319 GLU320 VAL321 LEU322 GLY323 GLN324 ILE325 LEU326 LEU327 THR328 ILE329 HIS330 ASN331 ILE332 ASN333 PHE334 MET335 ILE336 SER337 LEU338 MET339 LYS340 GLU341 VAL342 ARG343 ARG344 SER345 ILE346 GLU347 SER348 GLY349 THR350 PHE351 LYS352 GLU353 LEU354 LYS355 SER356 LYS357 VAL358 VAL359 GLU360 VAL361 TYR362 SER363
Ligands
Unit 5 ZN400 CL401 CL402 EDO403 EDO404 EDO405
Unit 6 ZN400 EDO401
Unit 7 ZN400 CL401 CL402 EDO403 EDO404 EDO405 EDO406
Unit 8 ZN400 CL401 EDO402 EDO403
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany