2AFB - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF 2-DEHYDRO-3- DEOXYGLUCONOKINASE (EC 2.7 (TM0067) FROM THERMOTOGA MARITIMA AT 2.05 A RESOLUTION
• Keywords: TM0067, 2-DEHYDRO-3- DEOXYGLUCONOKINASE, PFKB FAMILY CARBOHY KINASE, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GE JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2AFB	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	2-KETO-3-DEOXYGLUCONATE KINASE	A	329	2487	56
2	Protein	2-KETO-3-DEOXYGLUCONATE KINASE	B	326	2441	56
3	Ligand	2-KETO-3-DEOXYGLUCONATE KINASE	A	5	0	5
4	Ligand	2-KETO-3-DEOXYGLUCONATE KINASE	B	5	0	5
5	Water			394	0	394
total				1059	4928	516

Proteins

Unit 1

HIS -4 HIS -3 HIS -2 HIS -1 HIS 0 MSE 1 LYS 2 VAL 3 VAL 4 THR 5 PHE 6 GLY 7 GLU 8 ILE 9 MSE 10 LEU 11 ARG 12 LEU 13 SER 14 PRO 15 PRO 16 ASP 17 HIS 18 LYS 19 ARG 20 ILE 21 PHE 22 GLN 23 THR 24 ASP 25 SER 26 PHE 27 ASP 28 VAL 29 THR 30 TYR 31 GLY 32 GLY 33 ALA 34 GLU 35 ALA 36 ASN 37 VAL 38 ALA 39 ALA 40 PHE 41 LEU 42 ALA 43 GLN 44 MSE 45 GLY 46 LEU 47 ASP 48 ALA 49 TYR 50 PHE 51 VAL 52 THR 53 LYS 54 LEU 55 PRO 56 ASN 57 ASN 58 PRO 59 LEU 60 GLY 61 ASP 62 ALA 63 ALA 64 ALA 65 GLY 66 HIS 67 LEU 68 ARG 69 LYS 70 PHE 71 GLY 72 VAL 73 LYS 74 THR 75 ASP 76 TYR 77 ILE 78 ALA 79 ARG 80 GLY 81 GLY 82 ASN 83 ARG 84 ILE 85 GLY 86 ILE 87 TYR 88 PHE 89 LEU 90 GLU 91 ILE 92 GLY 93 ALA 94 SER 95 GLN 96 ARG 97 PRO 98 SER 99 LYS 100 VAL 101 VAL 102 TYR 103 ASP 104 ARG 105 ALA 106 HIS 107 SER 108 ALA 109 ILE 110 SER 111 GLU 112 ALA 113 LYS 114 ARG 115 GLU 116 ASP 117 PHE 118 ASP 119 TRP 120 GLU 121 LYS 122 ILE 123 LEU 124 ASP 125 GLY 126 ALA 127 ARG 128 TRP 129 PHE 130 HIS 131 PHE 132 SER 133 GLY 134 ILE 135 THR 136 PRO 137 PRO 138 LEU 139 GLY 140 LYS 141 GLU 142 LEU 143 PRO 144 LEU 145 ILE 146 LEU 147 GLU 148 ASP 149 ALA 150 LEU 151 LYS 152 VAL 153 ALA 154 ASN 155 GLU 156 LYS 157 GLY 158 VAL 159 THR 160 VAL 161 SER 162 CYS 163 ASP 164 LEU 165 ASN 166 TYR 167 ARG 168 ALA 169 ARG 170 LEU 171 TRP 172 THR 173 LYS 174 GLU 175 GLU 176 ALA 177 GLN 178 LYS 179 VAL 180 MSE 181 ILE 182 PRO 183 PHE 184 MSE 185 GLU 186 TYR 187 VAL 188 ASP 189 VAL 190 LEU 191 ILE 192 ALA 193 ASN 194 GLU 195 GLU 196 ASP 197 ILE 198 GLU 199 LYS 200 VAL 201 LEU 202 GLY 203 ILE 204 SER 205 VAL 206 GLU 207 GLY 208 LEU 209 ASN 217 ARG 218 GLU 219 ALA 220 TYR 221 ALA 222 LYS 223 ILE 224 ALA 225 GLU 226 GLU 227 VAL 228 THR 229 ARG 230 LYS 231 TYR 232 ASN 233 PHE 234 LYS 235 THR 236 VAL 237 GLY 238 ILE 239 THR 240 LEU 241 ARG 242 GLU 243 SER 244 ILE 245 SER 246 ALA 247 THR 248 VAL 249 ASN 250 TYR 251 TRP 252 SER 253 VAL 254 MSE 255 VAL 256 PHE 257 GLU 258 ASN 259 GLY 260 GLN 261 PRO 262 HIS 263 PHE 264 SER 265 ASN 266 ARG 267 TYR 268 GLU 269 ILE 270 HIS 271 ILE 272 VAL 273 ASP 274 ARG 275 VAL 276 GLY 277 ALA 278 GLY 279 ASP 280 SER 281 PHE 282 ALA 283 GLY 284 ALA 285 LEU 286 ILE 287 TYR 288 GLY 289 SER 290 LEU 291 MSE 292 GLY 293 PHE 294 ASP 295 SER 296 GLN 297 LYS 298 LYS 299 ALA 300 GLU 301 PHE 302 ALA 303 ALA 304 ALA 305 ALA 306 SER 307 CYS 308 LEU 309 LYS 310 HIS 311 THR 312 ILE 313 PRO 314 GLY 315 ASP 316 PHE 317 VAL 318 VAL 319 LEU 320 SER 321 ILE 322 GLU 323 GLU 324 ILE 325 GLU 326 LYS 327 LEU 328 ALA 329 SER 330 GLY 331

Unit 2

HIS 0 MSE 1 LYS 2 VAL 3 VAL 4 THR 5 PHE 6 GLY 7 GLU 8 ILE 9 MSE 10 LEU 11 ARG 12 LEU 13 SER 14 PRO 15 PRO 16 ASP 17 HIS 18 LYS 19 ARG 20 ILE 21 PHE 22 GLN 23 THR 24 ASP 25 SER 26 PHE 27 ASP 28 VAL 29 THR 30 TYR 31 GLY 32 GLY 33 ALA 34 GLU 35 ALA 36 ASN 37 VAL 38 ALA 39 ALA 40 PHE 41 LEU 42 ALA 43 GLN 44 MSE 45 GLY 46 LEU 47 ASP 48 ALA 49 TYR 50 PHE 51 VAL 52 THR 53 LYS 54 LEU 55 PRO 56 ASN 57 ASN 58 PRO 59 LEU 60 GLY 61 ASP 62 ALA 63 ALA 64 ALA 65 GLY 66 HIS 67 LEU 68 ARG 69 LYS 70 PHE 71 GLY 72 VAL 73 LYS 74 THR 75 ASP 76 TYR 77 ILE 78 ALA 79 ARG 80 GLY 81 GLY 82 ASN 83 ARG 84 ILE 85 GLY 86 ILE 87 TYR 88 PHE 89 LEU 90 GLU 91 ILE 92 GLY 93 ALA 94 SER 95 GLN 96 ARG 97 PRO 98 SER 99 LYS 100 VAL 101 VAL 102 TYR 103 ASP 104 ARG 105 ALA 106 HIS 107 SER 108 ALA 109 ILE 110 SER 111 GLU 112 ALA 113 LYS 114 ARG 115 GLU 116 ASP 117 PHE 118 ASP 119 TRP 120 GLU 121 LYS 122 ILE 123 LEU 124 ASP 125 GLY 126 ALA 127 ARG 128 TRP 129 PHE 130 HIS 131 PHE 132 SER 133 GLY 134 ILE 135 THR 136 PRO 137 PRO 138 LEU 139 GLY 140 LYS 141 GLU 142 LEU 143 PRO 144 LEU 145 ILE 146 LEU 147 GLU 148 ASP 149 ALA 150 LEU 151 LYS 152 VAL 153 ALA 154 ASN 155 GLU 156 LYS 157 GLY 158 VAL 159 THR 160 VAL 161 SER 162 CYS 163 ASP 164 LEU 165 ASN 166 TYR 167 ARG 168 ALA 169 ARG 170 LEU 171 TRP 172 THR 173 LYS 174 GLU 175 GLU 176 ALA 177 GLN 178 LYS 179 VAL 180 MSE 181 ILE 182 PRO 183 PHE 184 MSE 185 GLU 186 TYR 187 VAL 188 ASP 189 VAL 190 LEU 191 ILE 192 ALA 193 ASN 194 GLU 195 GLU 196 ASP 197 ILE 198 GLU 199 LYS 200 VAL 201 LEU 202 GLY 203 ILE 204 SER 205 VAL 206 GLU 207 GLY 208 LEU 209 ASP 210 ASN 217 ARG 218 GLU 219 ALA 220 TYR 221 ALA 222 LYS 223 ILE 224 ALA 225 GLU 226 GLU 227 VAL 228 THR 229 ARG 230 LYS 231 TYR 232 ASN 233 PHE 234 LYS 235 THR 236 VAL 237 GLY 238 ILE 239 THR 240 LEU 241 ARG 242 GLU 243 SER 244 ILE 245 SER 246 ALA 247 THR 248 VAL 249 ASN 250 TYR 251 TRP 252 SER 253 VAL 254 MSE 255 VAL 256 PHE 257 GLU 258 ASN 259 GLY 260 GLN 261 PRO 262 HIS 263 PHE 264 SER 265 ASN 266 ARG 267 TYR 268 GLU 269 ILE 270 HIS 271 ILE 272 VAL 273 ASP 274 ARG 275 VAL 276 GLY 277 ALA 278 GLY 279 ASP 280 SER 281 PHE 282 ALA 283 GLY 284 ALA 285 LEU 286 ILE 287 TYR 288 GLY 289 SER 290 LEU 291 MSE 292 GLY 293 PHE 294 ASP 295 SER 296 GLN 297 LYS 298 LYS 299 ALA 300 GLU 301 PHE 302 ALA 303 ALA 304 ALA 305 ALA 306 SER 307 CYS 308 LEU 309 LYS 310 HIS 311 THR 312 ILE 313 PRO 314 GLY 315 ASP 316 PHE 317 VAL 318 VAL 319 LEU 320 SER 321 ILE 322 GLU 323 GLU 324 ILE 325 GLU 326 LYS 327 LEU 328 ALA 329 SER 330 GLY 331

Ligands

Unit 3	NI 340 NI 341 NI 342 CA 343 CA 344
Unit 4	NI 340 NI 341 NI 342 CA 343 CA 344