2AD7 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF METHANOL DEHYDROGENASE FROM M. W3A1 (FO THE PRESENCE OF METHANOL
• Keywords: METHANOL DEHYDROGENASE, PQQ CONFIGURATION, METHANOL, OXIDORE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2AD7	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	METHANOL DEHYDROGENASE SUBUNIT 1	A	571	4402	0
2	Protein	METHANOL DEHYDROGENASE SUBUNIT 2	B	69	545	0
3	Protein	METHANOL DEHYDROGENASE SUBUNIT 1	C	571	4402	0
4	Protein	METHANOL DEHYDROGENASE SUBUNIT 2	D	69	545	0
5	Ligand	METHANOL DEHYDROGENASE SUBUNIT 1	A	2	0	25
6	Ligand	METHANOL DEHYDROGENASE SUBUNIT 1	C	2	0	25
7	Water			2060	0	2060
total				3344	9894	2110

Proteins

Unit 1	ASP 1 ALA 2 ASP 3 LEU 4 ASP 5 LYS 6 GLN 7 VAL 8 ASN 9 THR 10 ALA 11 GLY 12 ALA 13 TRP 14 PRO 15 ILE 16 ALA 17 THR 18 GLY 19 GLY 20 TYR 21 TYR 22 SER 23 GLN 24 HIS 25 ASN 26 SER 27 PRO 28 LEU 29 ALA 30 GLN 31 ILE 32 ASN 33 LYS 34 SER 35 ASN 36 VAL 37 LYS 38 ASN 39 VAL 40 LYS 41 ALA 42 ALA 43 TRP 44 SER 45 PHE 46 SER 47 THR 48 GLY 49 VAL 50 LEU 51 ASN 52 GLY 53 HIS 54 GLU 55 GLY 56 ALA 57 PRO 58 LEU 59 VAL 60 ILE 61 GLY 62 ASP 63 MET 64 MET 65 TYR 66 VAL 67 HIS 68 SER 69 ALA 70 PHE 71 PRO 72 ASN 73 ASN 74 THR 75 TYR 76 ALA 77 LEU 78 ASN 79 LEU 80 ASN 81 ASP 82 PRO 83 GLY 84 LYS 85 ILE 86 VAL 87 TRP 88 GLN 89 HIS 90 LYS 91 PRO 92 LYS 93 GLN 94 ASP 95 ALA 96 SER 97 THR 98 LYS 99 ALA 100 VAL 101 MET 102 CYS 103 CYS 104 ASP 105 VAL 106 VAL 107 ASP 108 ARG 109 GLY 110 LEU 111 ALA 112 TYR 113 GLY 114 ALA 115 GLY 116 GLN 117 ILE 118 VAL 119 LYS 120 LYS 121 GLN 122 ALA 123 ASN 124 GLY 125 HIS 126 LEU 127 LEU 128 ALA 129 LEU 130 ASP 131 ALA 132 LYS 133 THR 134 GLY 135 LYS 136 ILE 137 ASN 138 TRP 139 GLU 140 VAL 141 GLU 142 VAL 143 CYS 144 ASP 145 PRO 146 LYS 147 VAL 148 GLY 149 SER 150 THR 151 LEU 152 THR 153 GLN 154 ALA 155 PRO 156 PHE 157 VAL 158 ALA 159 LYS 160 ASP 161 THR 162 VAL 163 LEU 164 MET 165 GLY 166 CYS 167 SER 168 GLY 169 ALA 170 GLU 171 LEU 172 GLY 173 VAL 174 ARG 175 GLY 176 ALA 177 VAL 178 ASN 179 ALA 180 PHE 181 ASP 182 LEU 183 LYS 184 THR 185 GLY 186 GLU 187 LEU 188 LYS 189 TRP 190 ARG 191 ALA 192 PHE 193 ALA 194 THR 195 GLY 196 SER 197 ASP 198 ASP 199 SER 200 VAL 201 ARG 202 LEU 203 ALA 204 LYS 205 ASP 206 PHE 207 ASN 208 SER 209 ALA 210 ASN 211 PRO 212 HIS 213 TYR 214 GLY 215 GLN 216 PHE 217 GLY 218 LEU 219 GLY 220 THR 221 LYS 222 THR 223 TRP 224 GLU 225 GLY 226 ASP 227 ALA 228 TRP 229 LYS 230 ILE 231 GLY 232 GLY 233 GLY 234 THR 235 ASN 236 TRP 237 GLY 238 TRP 239 TYR 240 ALA 241 TYR 242 ASP 243 PRO 244 LYS 245 LEU 246 ASN 247 LEU 248 PHE 249 TYR 250 TYR 251 GLY 252 SER 253 GLY 254 ASN 255 PRO 256 ALA 257 PRO 258 TRP 259 ASN 260 GLU 261 THR 262 MET 263 ARG 264 PRO 265 GLY 266 ASP 267 ASN 268 LYS 269 TRP 270 THR 271 MET 272 THR 273 ILE 274 TRP 275 GLY 276 ARG 277 ASP 278 LEU 279 ASP 280 THR 281 GLY 282 MET 283 ALA 284 LYS 285 TRP 286 GLY 287 TYR 288 GLN 289 LYS 290 THR 291 PRO 292 HIS 293 ASP 294 GLU 295 TRP 296 ASP 297 PHE 298 ALA 299 GLY 300 VAL 301 ASN 302 GLN 303 MET 304 VAL 305 LEU 306 THR 307 ASP 308 GLN 309 PRO 310 VAL 311 ASN 312 GLY 313 LYS 314 MET 315 THR 316 PRO 317 LEU 318 LEU 319 SER 320 HIS 321 ILE 322 ASP 323 ARG 324 ASN 325 GLY 326 ILE 327 LEU 328 TYR 329 THR 330 LEU 331 ASN 332 ARG 333 GLU 334 ASN 335 GLY 336 ASN 337 LEU 338 ILE 339 VAL 340 ALA 341 GLU 342 LYS 343 VAL 344 ASP 345 PRO 346 ALA 347 VAL 348 ASN 349 VAL 350 PHE 351 LYS 352 LYS 353 VAL 354 ASP 355 LEU 356 LYS 357 THR 358 GLY 359 THR 360 PRO 361 VAL 362 ARG 363 ASP 364 PRO 365 GLU 366 PHE 367 ALA 368 THR 369 ARG 370 MET 371 ASP 372 HIS 373 LYS 374 GLY 375 THR 376 ASN 377 ILE 378 CYS 379 PRO 380 SER 381 ALA 382 MET 383 GLY 384 PHE 385 HIS 386 ASN 387 GLN 388 GLY 389 VAL 390 ASP 391 SER 392 TYR 393 ASP 394 PRO 395 GLU 396 SER 397 ARG 398 THR 399 LEU 400 TYR 401 ALA 402 GLY 403 LEU 404 ASN 405 HIS 406 ILE 407 CYS 408 MET 409 ASP 410 TRP 411 GLU 412 PRO 413 PHE 414 MET 415 LEU 416 PRO 417 TYR 418 ARG 419 ALA 420 GLY 421 GLN 422 PHE 423 PHE 424 VAL 425 GLY 426 ALA 427 THR 428 LEU 429 ALA 430 MET 431 TYR 432 PRO 433 GLY 434 PRO 435 ASN 436 GLY 437 PRO 438 THR 439 LYS 440 LYS 441 GLU 442 MET 443 GLY 444 GLN 445 ILE 446 ARG 447 ALA 448 PHE 449 ASP 450 LEU 451 THR 452 THR 453 GLY 454 LYS 455 ALA 456 LYS 457 TRP 458 THR 459 LYS 460 TRP 461 GLU 462 LYS 463 PHE 464 ALA 465 ALA 466 TRP 467 GLY 468 GLY 469 THR 470 LEU 471 TYR 472 THR 473 LYS 474 GLY 475 GLY 476 LEU 477 VAL 478 TRP 479 TYR 480 ALA 481 THR 482 LEU 483 ASP 484 GLY 485 TYR 486 LEU 487 LYS 488 ALA 489 LEU 490 ASP 491 ASN 492 LYS 493 ASP 494 GLY 495 LYS 496 GLU 497 LEU 498 TRP 499 ASN 500 PHE 501 LYS 502 MET 503 PRO 504 SER 505 GLY 506 GLY 507 ILE 508 GLY 509 SER 510 PRO 511 MET 512 THR 513 TYR 514 SER 515 PHE 516 LYS 517 GLY 518 LYS 519 GLN 520 TYR 521 ILE 522 GLY 523 SER 524 MET 525 TYR 526 GLY 527 VAL 528 GLY 529 GLY 530 TRP 531 PRO 532 GLY 533 VAL 534 GLY 535 LEU 536 VAL 537 PHE 538 ASP 539 LEU 540 THR 541 ASP 542 PRO 543 SER 544 ALA 545 GLY 546 LEU 547 GLY 548 ALA 549 VAL 550 GLY 551 ALA 552 PHE 553 ARG 554 GLU 555 LEU 556 GLN 557 ASN 558 HIS 559 THR 560 GLN 561 MET 562 GLY 563 GLY 564 GLY 565 LEU 566 MET 567 VAL 568 PHE 569 SER 570 LEU 571
Unit 2	TYR 1 ASP 2 GLY 3 GLN 4 ASN 5 CYS 6 LYS 7 GLU 8 PRO 9 GLY 10 ASN 11 CYS 12 TRP 13 GLU 14 ASN 15 LYS 16 PRO 17 GLY 18 TYR 19 PRO 20 GLU 21 LYS 22 ILE 23 ALA 24 GLY 25 SER 26 LYS 27 TYR 28 ASP 29 PRO 30 LYS 31 HIS 32 ASP 33 PRO 34 VAL 35 GLU 36 LEU 37 ASN 38 LYS 39 GLN 40 GLU 41 GLU 42 SER 43 ILE 44 LYS 45 ALA 46 MET 47 ASP 48 ALA 49 ARG 50 ASN 51 ALA 52 LYS 53 ARG 54 ILE 55 ALA 56 ASN 57 ALA 58 LYS 59 SER 60 SER 61 GLY 62 ASN 63 PHE 64 VAL 65 PHE 66 ASP 67 VAL 68 LYS 69
Unit 3	ASP 1 ALA 2 ASP 3 LEU 4 ASP 5 LYS 6 GLN 7 VAL 8 ASN 9 THR 10 ALA 11 GLY 12 ALA 13 TRP 14 PRO 15 ILE 16 ALA 17 THR 18 GLY 19 GLY 20 TYR 21 TYR 22 SER 23 GLN 24 HIS 25 ASN 26 SER 27 PRO 28 LEU 29 ALA 30 GLN 31 ILE 32 ASN 33 LYS 34 SER 35 ASN 36 VAL 37 LYS 38 ASN 39 VAL 40 LYS 41 ALA 42 ALA 43 TRP 44 SER 45 PHE 46 SER 47 THR 48 GLY 49 VAL 50 LEU 51 ASN 52 GLY 53 HIS 54 GLU 55 GLY 56 ALA 57 PRO 58 LEU 59 VAL 60 ILE 61 GLY 62 ASP 63 MET 64 MET 65 TYR 66 VAL 67 HIS 68 SER 69 ALA 70 PHE 71 PRO 72 ASN 73 ASN 74 THR 75 TYR 76 ALA 77 LEU 78 ASN 79 LEU 80 ASN 81 ASP 82 PRO 83 GLY 84 LYS 85 ILE 86 VAL 87 TRP 88 GLN 89 HIS 90 LYS 91 PRO 92 LYS 93 GLN 94 ASP 95 ALA 96 SER 97 THR 98 LYS 99 ALA 100 VAL 101 MET 102 CYS 103 CYS 104 ASP 105 VAL 106 VAL 107 ASP 108 ARG 109 GLY 110 LEU 111 ALA 112 TYR 113 GLY 114 ALA 115 GLY 116 GLN 117 ILE 118 VAL 119 LYS 120 LYS 121 GLN 122 ALA 123 ASN 124 GLY 125 HIS 126 LEU 127 LEU 128 ALA 129 LEU 130 ASP 131 ALA 132 LYS 133 THR 134 GLY 135 LYS 136 ILE 137 ASN 138 TRP 139 GLU 140 VAL 141 GLU 142 VAL 143 CYS 144 ASP 145 PRO 146 LYS 147 VAL 148 GLY 149 SER 150 THR 151 LEU 152 THR 153 GLN 154 ALA 155 PRO 156 PHE 157 VAL 158 ALA 159 LYS 160 ASP 161 THR 162 VAL 163 LEU 164 MET 165 GLY 166 CYS 167 SER 168 GLY 169 ALA 170 GLU 171 LEU 172 GLY 173 VAL 174 ARG 175 GLY 176 ALA 177 VAL 178 ASN 179 ALA 180 PHE 181 ASP 182 LEU 183 LYS 184 THR 185 GLY 186 GLU 187 LEU 188 LYS 189 TRP 190 ARG 191 ALA 192 PHE 193 ALA 194 THR 195 GLY 196 SER 197 ASP 198 ASP 199 SER 200 VAL 201 ARG 202 LEU 203 ALA 204 LYS 205 ASP 206 PHE 207 ASN 208 SER 209 ALA 210 ASN 211 PRO 212 HIS 213 TYR 214 GLY 215 GLN 216 PHE 217 GLY 218 LEU 219 GLY 220 THR 221 LYS 222 THR 223 TRP 224 GLU 225 GLY 226 ASP 227 ALA 228 TRP 229 LYS 230 ILE 231 GLY 232 GLY 233 GLY 234 THR 235 ASN 236 TRP 237 GLY 238 TRP 239 TYR 240 ALA 241 TYR 242 ASP 243 PRO 244 LYS 245 LEU 246 ASN 247 LEU 248 PHE 249 TYR 250 TYR 251 GLY 252 SER 253 GLY 254 ASN 255 PRO 256 ALA 257 PRO 258 TRP 259 ASN 260 GLU 261 THR 262 MET 263 ARG 264 PRO 265 GLY 266 ASP 267 ASN 268 LYS 269 TRP 270 THR 271 MET 272 THR 273 ILE 274 TRP 275 GLY 276 ARG 277 ASP 278 LEU 279 ASP 280 THR 281 GLY 282 MET 283 ALA 284 LYS 285 TRP 286 GLY 287 TYR 288 GLN 289 LYS 290 THR 291 PRO 292 HIS 293 ASP 294 GLU 295 TRP 296 ASP 297 PHE 298 ALA 299 GLY 300 VAL 301 ASN 302 GLN 303 MET 304 VAL 305 LEU 306 THR 307 ASP 308 GLN 309 PRO 310 VAL 311 ASN 312 GLY 313 LYS 314 MET 315 THR 316 PRO 317 LEU 318 LEU 319 SER 320 HIS 321 ILE 322 ASP 323 ARG 324 ASN 325 GLY 326 ILE 327 LEU 328 TYR 329 THR 330 LEU 331 ASN 332 ARG 333 GLU 334 ASN 335 GLY 336 ASN 337 LEU 338 ILE 339 VAL 340 ALA 341 GLU 342 LYS 343 VAL 344 ASP 345 PRO 346 ALA 347 VAL 348 ASN 349 VAL 350 PHE 351 LYS 352 LYS 353 VAL 354 ASP 355 LEU 356 LYS 357 THR 358 GLY 359 THR 360 PRO 361 VAL 362 ARG 363 ASP 364 PRO 365 GLU 366 PHE 367 ALA 368 THR 369 ARG 370 MET 371 ASP 372 HIS 373 LYS 374 GLY 375 THR 376 ASN 377 ILE 378 CYS 379 PRO 380 SER 381 ALA 382 MET 383 GLY 384 PHE 385 HIS 386 ASN 387 GLN 388 GLY 389 VAL 390 ASP 391 SER 392 TYR 393 ASP 394 PRO 395 GLU 396 SER 397 ARG 398 THR 399 LEU 400 TYR 401 ALA 402 GLY 403 LEU 404 ASN 405 HIS 406 ILE 407 CYS 408 MET 409 ASP 410 TRP 411 GLU 412 PRO 413 PHE 414 MET 415 LEU 416 PRO 417 TYR 418 ARG 419 ALA 420 GLY 421 GLN 422 PHE 423 PHE 424 VAL 425 GLY 426 ALA 427 THR 428 LEU 429 ALA 430 MET 431 TYR 432 PRO 433 GLY 434 PRO 435 ASN 436 GLY 437 PRO 438 THR 439 LYS 440 LYS 441 GLU 442 MET 443 GLY 444 GLN 445 ILE 446 ARG 447 ALA 448 PHE 449 ASP 450 LEU 451 THR 452 THR 453 GLY 454 LYS 455 ALA 456 LYS 457 TRP 458 THR 459 LYS 460 TRP 461 GLU 462 LYS 463 PHE 464 ALA 465 ALA 466 TRP 467 GLY 468 GLY 469 THR 470 LEU 471 TYR 472 THR 473 LYS 474 GLY 475 GLY 476 LEU 477 VAL 478 TRP 479 TYR 480 ALA 481 THR 482 LEU 483 ASP 484 GLY 485 TYR 486 LEU 487 LYS 488 ALA 489 LEU 490 ASP 491 ASN 492 LYS 493 ASP 494 GLY 495 LYS 496 GLU 497 LEU 498 TRP 499 ASN 500 PHE 501 LYS 502 MET 503 PRO 504 SER 505 GLY 506 GLY 507 ILE 508 GLY 509 SER 510 PRO 511 MET 512 THR 513 TYR 514 SER 515 PHE 516 LYS 517 GLY 518 LYS 519 GLN 520 TYR 521 ILE 522 GLY 523 SER 524 MET 525 TYR 526 GLY 527 VAL 528 GLY 529 GLY 530 TRP 531 PRO 532 GLY 533 VAL 534 GLY 535 LEU 536 VAL 537 PHE 538 ASP 539 LEU 540 THR 541 ASP 542 PRO 543 SER 544 ALA 545 GLY 546 LEU 547 GLY 548 ALA 549 VAL 550 GLY 551 ALA 552 PHE 553 ARG 554 GLU 555 LEU 556 GLN 557 ASN 558 HIS 559 THR 560 GLN 561 MET 562 GLY 563 GLY 564 GLY 565 LEU 566 MET 567 VAL 568 PHE 569 SER 570 LEU 571
Unit 4	TYR 1 ASP 2 GLY 3 GLN 4 ASN 5 CYS 6 LYS 7 GLU 8 PRO 9 GLY 10 ASN 11 CYS 12 TRP 13 GLU 14 ASN 15 LYS 16 PRO 17 GLY 18 TYR 19 PRO 20 GLU 21 LYS 22 ILE 23 ALA 24 GLY 25 SER 26 LYS 27 TYR 28 ASP 29 PRO 30 LYS 31 HIS 32 ASP 33 PRO 34 VAL 35 GLU 36 LEU 37 ASN 38 LYS 39 GLN 40 GLU 41 GLU 42 SER 43 ILE 44 LYS 45 ALA 46 MET 47 ASP 48 ALA 49 ARG 50 ASN 51 ALA 52 LYS 53 ARG 54 ILE 55 ALA 56 ASN 57 ALA 58 LYS 59 SER 60 SER 61 GLY 62 ASN 63 PHE 64 VAL 65 PHE 66 ASP 67 VAL 68 LYS 69

Ligands

Unit 5	PQQ 701 CA 702
Unit 6	PQQ 703 CA 704