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Sequence, Chains, Asymmetric and Biological Units

Title DISSECTING THE ROLES OF A STRICTLY CONSERVED TYROSINE IN SUB RECOGNITION AND CATALYSIS BY PSEUDOURIDINE 55 SYNTHASE
Keywords RNA MODIFICATIONS, ISOMERASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2AB4     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    B 20 401 22
2  Protein   TRNA PSEUDOURIDINE SYNTHASE B  A 300 2415 0
3  Ligand   TRNA PSEUDOURIDINE SYNTHASE B  A 1 0 1
4 Water     82 0 82
total       403 2816 105

Proteins
Unit 2 MET1 LYS2 HIS3 GLY4 ILE5 LEU6 VAL7 ALA8 TYR9 LYS10 PRO11 LYS12 GLY13 PRO14 THR15 SER16 HIS17 ASP18 VAL19 VAL20 ASP21 GLU22 VAL23 ARG24 LYS25 LYS26 LEU27 LYS28 THR29 ARG30 LYS31 VAL32 GLY33 HIS34 GLY35 GLY36 THR37 LEU38 ASP39 PRO40 PHE41 ALA42 CYS43 GLY44 VAL45 LEU46 ILE47 ILE48 GLY49 VAL50 ASN51 GLN52 GLY53 THR54 ARG55 ILE56 LEU57 GLU58 PHE59 TYR60 LYS61 ASP62 LEU63 LYS64 LYS65 VAL66 PHE67 TRP68 VAL69 LYS70 MET71 ARG72 LEU73 GLY74 LEU75 ILE76 THR77 GLU78 THR79 PHE80 ASP81 ILE82 THR83 GLY84 GLU85 VAL86 VAL87 GLU88 GLU89 ARG90 GLU91 CYS92 ASN93 VAL94 THR95 GLU96 GLU97 GLU98 ILE99 ARG100 GLU101 ALA102 ILE103 PHE104 SER105 PHE106 VAL107 GLY108 GLU109 TYR110 ASP111 GLN112 VAL113 PRO114 PRO115 ALA116 TYR117 SER118 ALA119 LYS120 LYS121 TYR122 LYS123 GLY124 GLU125 ARG126 LEU127 TYR128 LYS129 LEU130 ALA131 ARG132 GLU133 GLY134 LYS135 ILE136 ILE137 ASN138 LEU139 PRO140 PRO141 LYS142 ARG143 VAL144 LYS145 ILE146 PHE147 LYS148 ILE149 TRP150 ASP151 VAL152 ASN153 ILE154 GLU155 GLY156 ARG157 ASP158 VAL159 SER160 PHE161 ARG162 VAL163 GLU164 VAL165 SER166 PRO167 GLY168 THR169 TYR170 ILE171 ARG172 SER173 LEU174 CYS175 MET176 ASP177 ILE178 GLY179 TYR180 LYS181 LEU182 GLY183 CYS184 GLY185 ALA186 THR187 ALA188 VAL189 GLU190 LEU191 VAL192 ARG193 GLU194 SER195 VAL196 GLY197 PRO198 HIS199 THR200 ILE201 GLU202 GLU203 SER204 LEU205 ASN206 VAL207 PHE208 GLU209 ALA210 ALA211 PRO212 GLU213 GLU214 ILE215 GLU216 ASN217 ARG218 ILE219 ILE220 PRO221 LEU222 GLU223 LYS224 CYS225 LEU226 GLU227 TRP228 LEU229 PRO230 ARG231 VAL232 VAL233 VAL234 HIS235 GLN236 GLU237 SER238 THR239 LYS240 MET241 ILE242 LEU243 ASN244 GLY245 SER246 GLN247 ILE248 HIS249 LEU250 GLU251 MET252 LEU253 LYS254 GLU255 TRP256 ASP257 GLY258 PHE259 LYS260 LYS261 GLY262 GLU263 VAL264 VAL265 ARG266 VAL267 PHE268 ASN269 GLU270 GLU271 GLY272 ARG273 LEU274 LEU275 ALA276 LEU277 ALA278 GLU279 ALA280 GLU281 ARG282 ASN283 SER284 SER285 PHE286 ARG295 GLN296 GLU297 ARG298 VAL299 LEU300 THR301 LEU302 ARG303 LYS304 VAL305 PHE306 GLN307 THR308

Nucleic acids
Unit 1 C3 C4 A5 C6 G7 G8 U9 FHU10 C11 G12 A13 A14 U15 C16 C17 G18 U19 G20 G21 C22

Ligands
Unit 3 ZN310

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany