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Title | STRUCTURE OF TRIGGER FACTOR BINDING DOMAIN IN BIOLOGICALLY H COMPLEX WITH EUBACTERIAL RIBOSOME. | |
Keywords | TRIGGER FACTOR, 50S, RIBOSOME, CHEPERONE, TUNNEL | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2AAR | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | 0 | 2766 | 59359 | 0 | |
2 | Protein | 50S RIBOSOMAL PROTEIN L23 | R | 93 | 93 | 0 |
3 | Protein | 50S RIBOSOMAL PROTEIN L29 | W | 65 | 65 | 0 |
4 | Protein | TRIGGER FACTOR | 7 | 113 | 113 | 0 |
total | 3037 | 59630 | 0 |
Unit 2 | SER2 HIS3 TYR4 ASP5 ILE6 LEU7 GLN8 ALA9 PRO10 VAL11 ILE12 SER13 GLU14 LYS15 ALA16 TYR17 SER18 ALA19 MET20 GLU21 ARG22 GLY23 VAL24 TYR25 SER26 PHE27 TRP28 VAL29 SER30 PRO31 LYS32 ALA33 THR34 LYS35 THR36 GLU37 ILE38 LYS39 ASP40 ALA41 ILE42 GLN43 GLN44 ALA45 PHE46 GLY47 VAL48 ARG49 VAL50 ILE51 GLY52 ILE53 SER54 THR55 MET56 ASN57 VAL58 PRO59 GLY60 LYS61 ARG62 LYS63 ARG64 VAL65 GLY66 ARG67 PHE68 ILE69 GLY70 GLN71 ARG72 ASN73 ASP74 ARG75 LYS76 LYS77 ALA78 ILE79 VAL80 ARG81 LEU82 ALA83 GLU84 GLY85 GLN86 SER87 ILE88 GLU89 ALA90 LEU91 ALA92 GLY93 GLN94 |
Unit 3 | LYS2 PRO3 SER4 GLU5 MET6 ARG7 ASN8 LEU9 GLN10 ALA11 THR12 ASP13 PHE14 ALA15 LYS16 GLU17 ILE18 ASP19 ALA20 ARG21 LYS22 LYS23 GLU24 LEU25 MET26 GLU27 LEU28 ARG29 PHE30 GLN31 ALA32 ALA33 ALA34 GLY35 GLN36 LEU37 ALA38 GLN39 PRO40 HIS41 ARG42 VAL43 ARG44 GLN45 LEU46 ARG47 ARG48 GLU49 VAL50 ALA51 GLN52 LEU53 ASN54 THR55 VAL56 LYS57 ALA58 GLU59 LEU60 ALA61 ARG62 LYS63 GLY64 GLU65 GLN66 |
Unit 4 | ALA1 GLU2 LEU3 ILE4 SER5 LYS6 GLU7 GLY8 ASN9 LYS10 VAL11 GLU12 PHE13 LYS14 VAL15 SER16 VAL17 PRO18 ALA19 ALA20 GLU21 VAL22 ASN23 ARG24 ALA25 TYR26 ASP27 GLN28 VAL29 TRP30 ALA31 GLY32 LEU33 ALA34 ARG35 ASP36 VAL37 ARG38 VAL39 PRO40 GLY41 PHE42 ARG43 PRO44 GLY45 LYS46 ALA47 PRO48 ARG49 LYS50 VAL51 ILE52 GLU53 ASN54 ARG55 VAL56 GLY57 LYS58 GLY59 TYR60 VAL61 GLU62 SER63 GLN64 VAL65 ARG66 ASP67 ARG68 LEU69 LEU70 GLU71 THR72 HIS73 TYR74 SER75 GLN76 GLY77 LEU78 ARG79 GLU80 LEU81 GLY82 LEU83 ASN84 LEU85 VAL86 ASP87 ALA88 THR89 VAL90 ASP91 PRO92 GLN93 ASP94 VAL95 GLN96 SER97 GLY98 GLN99 ALA100 PHE101 GLU102 PHE103 THR104 VAL105 LYS106 GLY107 GLU108 THR109 TYR110 PRO111 GLU112 VAL113 |
Unit 1 | G1 G2 U3 C4 A5 A6 G7 A8 U9 A10 G11 U12 A13 A14 G15 G16 G17 U18 C19 C20 A21 C22 G23 G24 U25 G26 G27 A28 U29 G30 C31 C32 C33 U34 G35 G36 C37 G38 C39 U40 G41 G42 A43 G44 C45 C46 G47 A48 U49 G50 A51 A52 G53 G54 A55 C56 G57 C58 G59 A60 U61 U62 A63 C64 C65 U66 G67 C68 G69 A70 A71 A72 A73 G74 C75 C76 C77 C78 G79 A80 C81 G82 A83 G84 C85 U86 G87 G88 A89 G90 A91 U92 A93 C94 G95 C96 U97 U98 U99 G100 A101 C102 U103 C104 G105 G106 G107 G108 A109 U110 G111 U112 C113 C114 G115 A116 A117 U118 G119 G120 G121 G122 A123 A124 A125 C126 C127 C128 A129 C130 C131 U132 C133 G134 U135 A136 A137 G138 A139 G140 G141 U142 A143 U144 C145 C146 G147 C148 A149 A150 G151 G152 A153 U154 G155 G156 G157 A158 A159 C160 U161 C162 A163 G164 G165 G166 A167 A168 C169 U170 G171 A172 A173 A174 C175 A176 U177 C178 U179 C180 A181 G182 U183 A184 C185 C186 U187 G188 A189 A190 G191 G192 A193 G194 A195 A196 G197 A198 A199 A200 G201 A202 G203 A204 A205 U206 U207 C208 G209 A210 U211 U212 C213 C214 G215 U216 U217 A218 G219 U220 A221 G222 C223 G224 G225 C226 G227 A228 G229 C230 G231 A232 A233 C234 C235 C236 G237 G238 A239 U240 C241 A242 G243 C244 C245 C246 A247 A248 A292 U293 U294 C295 A296 A297 C298 C299 C300 C301 U302 C303 A304 A305 G306 C307 C308 G309 A310 A311 G312 U313 G314 G315 C316 U317 G318 G319 A320 A321 A322 G323 C324 U325 A326 C327 A328 C329 C330 U331 C332 A333 G334 A335 A336 G337 G338 U339 G340 A341 G342 A343 G344 U345 C346 C347 U348 G349 U350 A351 G352 G353 C354 G355 A356 A357 C358 G359 A360 G361 C362 G363 G364 U365 U366 G367 A368 C369 U370 G371 U372 A373 A387 G388 G389 U390 C391 G392 U393 U394 G395 U396 U397 C398 G399 U400 G401 A402 A403 A404 C405 G406 A407 U408 G409 A410 C411 U412 G413 A414 A415 U416 C417 C418 G419 C420 G421 C422 G423 G424 A425 C426 C427 A428 C429 C430 G431 C432 G433 C434 A435 A436 G437 G438 C439 U440 A441 A442 A443 U444 A445 C446 U447 C448 C449 C450 A451 G452 U453 G454 A455 C456 C457 G458 A459 U460 A461 G462 C463 G464 C465 A466 U467 A468 G469 U470 A471 C472 C473 G474 U475 G476 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G677 G678 C679 U680 A681 G682 A683 C684 U685 C686 G687 A688 A689 A690 C691 C692 A693 G694 G695 U696 G697 A698 G699 C700 U701 A702 A703 G704 C705 A706 U707 G708 A709 C710 C711 A712 G713 G714 U715 U716 G717 A718 A719 A720 C721 C722 C723 C724 C725 G726 U727 G728 A729 C730 A731 G732 G733 G734 G735 G736 C737 G738 G739 A740 G741 G742 A743 C744 C745 G746 A747 A748 C749 C750 G751 G752 U753 G754 C755 C756 U757 G758 C759 U760 G761 A762 A763 A764 C765 A766 G767 U768 C769 U770 C771 G772 G773 A774 U775 G776 A777 G778 U779 U780 G781 U782 G783 U784 U785 U786 A787 G788 G789 A790 G791 U792 G793 A794 A795 A796 A797 G798 C799 U800 A801 A802 C803 C804 G805 A806 A807 C808 C809 U810 G811 G812 A813 G814 A815 U816 A817 G818 C819 U820 A821 G822 U823 U824 C825 U826 C827 C828 C829 C830 G831 A832 A833 A834 U835 G836 U837 A838 U839 U840 G841 A842 G843 G844 U845 A846 C847 A848 G849 C850 C851 U852 C853 G854 G855 A856 U857 G858 U859 U860 G861 A862 C863 C864 A865 U866 G867 U868 C869 C870 U871 G872 U873 A874 G875 A876 G877 C878 A879 C880 U881 C882 A883 C884 A885 A886 G887 G888 C889 U890 A891 A911 A912 A913 C914 C915 U916 U917 A918 U919 G920 A921 A922 A923 C924 U925 C926 C927 G928 A929 A930 G931 G932 G933 G934 C935 A936 C937 G938 C939 G940 U941 U942 U943 A944 G945 U946 C947 C948 G949 G950 G951 A952 G953 U954 G955 A956 G957 G958 C959 U960 G961 C962 G963 A964 G965 A966 G967 C968 U969 A970 A971 C972 U973 U974 C975 C976 G977 U978 A979 G980 C981 C982 G983 A984 G985 A986 G987 G988 G989 A990 A991 A992 C993 A994 A995 C996 C997 C998 A999 G1000 A1001 C1002 C1003 A1004 U1005 C1006 A1007 G1008 C1009 U1010 A1011 A1012 G1013 G1014 U1015 C1016 C1017 C1018 U1019 A1020 A1021 A1022 U1023 G1024 A1025 U1026 C1027 G1028 C1029 U1030 C1031 A1032 G1033 U1034 G1035 G1036 U1037 U1038 A1039 A1040 G1041 G1042 A1043 U1044 G1045 U1046 G1047 U1048 C1049 G1050 U1051 C1052 G1053 C1054 A1055 U1056 A1057 G1058 A1059 C1060 A1061 G1062 C1063 C1064 A1065 G1066 G1067 A1068 G1069 G1070 U1071 U1072 G1073 G1074 C1075 U1076 U1077 A1078 G1079 A1080 A1081 G1082 C1083 A1084 G1085 C1086 C1087 A1088 C1089 C1090 C1091 U1092 U1093 C1094 A1095 A1096 A1097 G1098 A1099 G1100 U1101 G1102 C1103 G1104 U1105 A1106 A1107 U1108 A1109 G1110 C1111 U1112 C1113 A1114 C1115 U1116 G1117 G1118 U1119 C1120 G1121 A1122 G1123 U1124 G1125 A1126 C1127 G1128 A1129 U1130 G1131 C1132 G1133 C1134 C1135 G1136 A1137 A1138 A1139 A1140 U1141 G1142 A1143 U1144 C1145 G1146 G1147 G1148 G1149 C1150 U1151 C1152 A1153 A1154 G1155 U1156 G1157 A1158 U1159 C1160 U1161 A1162 C1163 C1164 G1165 A1166 A1167 G1168 C1169 U1170 A1171 U1172 G1173 G1174 A1175 U1176 U1177 C1178 A1179 A1180 C1181 U1182 C1183 G1184 C1185 G1186 A1187 A1188 G1189 C1190 G1191 A1192 G1193 U1194 U1195 G1196 U1197 C1198 U1199 G1200 G1201 U1202 A1203 G1204 G1205 G1206 G1207 A1208 G1209 C1210 G1211 U1212 U1213 C1214 A1215 G1216 U1217 C1218 C1219 G1220 C1221 G1222 G1223 A1224 G1225 A1226 A1227 G1228 C1229 C1230 A1231 U1232 A1233 C1234 C1235 G1236 G1237 A1238 A1239 G1240 G1241 A1242 G1243 U1244 G1245 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G1744 C1745 A1746 G1747 U1748 G1749 A1750 A1751 U1752 A1753 G1754 G1755 C1756 C1757 C1758 A1759 G1760 G1761 C1762 G1763 A1764 C1765 U1766 G1767 U1768 U1769 U1770 A1771 C1772 C1773 A1774 A1775 A1776 A1777 U1778 C1779 A1780 C1781 A1782 G1783 C1784 A1785 C1786 U1787 C1788 U1789 G1790 C1791 C1792 A1793 A1794 C1795 A1796 C1797 G1798 A1799 A1800 C1801 A1802 G1803 U1804 G1805 G1806 A1807 C1808 G1809 U1810 A1811 U1812 A1813 G1814 G1815 G1816 U1817 G1818 U1819 G1820 A1821 C1822 G1823 C1824 C1825 U1826 G1827 C1828 C1829 C1830 G1831 G1832 U1833 G1834 C1835 C1836 G1837 G1838 A1839 A1840 G1841 G1842 U1843 C1844 A1845 A1846 G1847 U1848 G1849 G1850 A1851 G1852 C1853 G1854 G1855 U1856 G1857 C1858 A1859 A1860 G1861 C1862 U1863 G1864 C1865 G1866 A1867 A1868 A1869 U1870 G1871 A1872 A1873 G1874 C1875 C1876 C1877 C1878 G1879 G1880 U1881 G1882 A1883 A1884 C1885 G1886 G1887 C1888 G1889 G1890 C1891 C1892 G1893 U1894 A1895 A1896 C1897 U1898 A1899 U1900 A1901 A1902 C1903 G1904 G1905 U1906 C1907 C1908 U1909 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U2275 C2276 A2277 A2278 G2279 A2280 C2281 G2282 G2283 U2284 U2285 G2286 G2287 A2288 A2289 A2290 U2291 C2292 G2293 U2294 C2295 U2296 G2297 U2298 A2299 G2300 A2301 G2302 C2303 G2304 C2305 A2306 A2307 A2308 G2309 G2310 U2311 A2312 G2313 A2314 A2315 G2316 G2317 U2318 G2319 G2320 C2321 U2322 U2323 G2324 A2325 C2326 U2327 G2328 C2329 G2330 A2331 G2332 A2333 C2334 U2335 G2336 A2337 C2338 A2339 C2340 G2341 U2342 C2343 G2344 A2345 G2346 C2347 A2348 G2349 G2350 G2351 A2352 G2353 G2354 A2355 A2356 A2357 C2358 U2359 C2360 G2361 G2362 G2363 C2364 U2365 U2366 A2367 G2368 U2369 G2370 A2371 A2372 C2373 C2374 G2375 G2376 U2377 G2378 G2379 U2380 A2381 C2382 C2383 G2384 U2385 G2386 U2387 G2388 G2389 A2390 A2391 G2392 G2393 G2394 C2395 C2396 A2397 U2398 C2399 G2400 A2401 U2402 C2403 A2404 A2405 C2406 G2407 G2408 A2409 U2410 A2411 A2412 A2413 A2414 G2415 U2416 U2417 A2418 C2419 C2420 C2421 C2422 G2423 G2424 G2425 G2426 A2427 U2428 A2429 A2430 C2431 A2432 G2433 G2434 C2435 U2436 G2437 A2438 U2439 C2440 U2441 C2442 C2443 C2444 C2445 C2446 G2447 A2448 G2449 A2450 G2451 U2452 C2453 C2454 A2455 U2456 A2457 U2458 C2459 G2460 G2461 C2462 G2463 G2464 G2465 G2466 A2467 G2468 G2469 U2470 U2471 U2472 G2473 G2474 C2475 A2476 C2477 C2478 U2479 C2480 G2481 A2482 U2483 G2484 U2485 C2486 G2487 G2488 C2489 U2490 C2491 G2492 U2493 C2494 G2495 C2496 A2497 U2498 C2499 C2500 U2501 G2502 G2503 G2504 G2505 C2506 U2507 G2508 A2509 A2510 G2511 A2512 A2513 G2514 G2515 U2516 C2517 C2518 C2519 A2520 A2521 G2522 G2523 G2524 U2525 U2526 G2527 G2528 G2529 C2530 U2531 G2532 U2533 U2534 C2535 G2536 C2537 C2538 C2539 A2540 U2541 U2542 A2543 A2544 A2545 G2546 C2547 G2548 G2549 C2550 A2551 C2552 G2553 C2554 G2555 A2556 G2557 C2558 U2559 G2560 G2561 G2562 U2563 U2564 C2565 A2566 G2567 A2568 A2569 C2570 G2571 U2572 C2573 G2574 U2575 G2576 A2577 G2578 A2579 C2580 A2581 G2582 U2583 U2584 C2585 G2586 G2587 U2588 C2589 U2590 C2591 U2592 A2593 U2594 C2595 C2596 G2597 C2598 U2599 A2600 C2601 G2602 G2603 G2604 C2605 G2606 C2607 A2608 G2609 G2610 A2611 G2612 A2613 A2614 U2615 U2616 G2617 A2618 G2619 G2620 G2621 G2622 A2623 G2624 U2625 U2626 G2627 C2628 U2629 C2630 C2631 U2632 A2633 G2634 U2635 A2636 C2637 G2638 A2639 G2640 A2641 G2642 G2643 A2644 C2645 C2646 G2647 G2648 A2649 G2650 U2651 G2652 A2653 A2654 C2655 G2656 G2657 A2658 C2659 C2660 G2661 C2662 U2663 G2664 G2665 U2666 C2667 U2668 C2669 C2670 C2671 U2672 G2673 C2674 U2675 G2676 U2677 C2678 G2679 U2680 A2681 C2682 C2683 A2684 A2685 C2686 G2687 G2688 C2689 A2690 C2691 A2692 U2693 G2694 C2695 A2696 G2697 G2698 G2699 U2700 A2701 G2702 C2703 U2704 A2705 U2706 G2707 U2708 C2709 C2710 G2711 G2712 A2713 A2714 C2715 G2716 G2717 A2718 U2719 A2720 A2721 C2722 C2723 G2724 C2725 U2726 G2727 A2728 A2729 A2730 G2731 C2732 A2733 U2734 C2735 U2736 A2737 A2738 G2739 C2740 G2741 G2742 G2743 A2744 A2745 G2746 C2747 C2748 A2749 G2750 C2751 C2752 C2753 C2754 A2755 A2756 G2757 A2758 U2759 G2760 A2761 G2762 U2763 U2764 C2765 U2766 C2767 C2768 C2769 A2770 C2771 U2772 G2773 U2774 U2778 C2779 A2780 G2781 G2782 U2783 A2784 A2785 G2786 A2787 C2788 U2789 C2790 C2791 C2792 G2793 G2794 A2795 A2796 G2797 A2798 C2799 C2800 A2801 C2802 C2803 G2804 G2805 G2806 U2807 U2808 A2809 A2810 G2811 A2812 G2813 G2814 C2815 C2816 A2817 G2818 G2819 C2820 G2821 U2822 G2823 C2824 A2825 C2826 G2827 C2828 A2829 U2830 A2831 G2832 C2833 A2834 A2835 U2836 G2837 U2838 G2839 U2840 U2841 C2842 A2843 G2844 C2845 G2846 G2847 A2848 C2849 U2850 G2851 G2852 U2853 G2854 C2855 U2856 C2857 A2858 U2859 C2860 A2861 G2862 U2863 C2864 G2865 A2866 G2867 G2868 U2869 C2870 U2871 U2872 G2873 A2874 C2875 C2876 A2877 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |