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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF H278A ARGININE DEIMINASE WITH L-ARGININE FORMIN ALKYLTHIOURONIUM REACTION INTERMEDIATE
Keywords ARGININE DEGRADATION PATHWAY, L-ARGININE DEIMINASE, CATALYTI MECHANISM, HYDROLASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2AAF     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ARGININE DEIMINASE  A 405 3153 17
2  Protein   ARGININE DEIMINASE  B 409 3185 17
3  Protein   ARGININE DEIMINASE  C 406 3168 17
4  Protein   ARGININE DEIMINASE  D 406 3166 17
5 Water     802 0 802
total       2428 12672 870

Proteins
Unit 1 THR6 LYS7 LEU8 GLY9 VAL10 HIS11 SER12 GLU13 ALA14 GLY15 LYS16 LEU17 ARG18 LYS19 VAL20 MET21 VAL22 CYS23 SER24 PRO25 GLY26 LEU27 ALA28 HIS29 GLN30 ARG31 LEU32 THR33 PRO34 SER35 ASN36 CYS37 ASP38 GLU39 LEU40 LEU41 PHE42 ASP43 ASP44 VAL45 ILE46 TRP47 VAL48 ASN49 GLN50 ALA51 LYS52 ARG53 ASP54 HIS55 PHE56 ASP57 PHE58 VAL59 THR60 LYS61 MET62 ARG63 GLU64 ARG65 GLY66 ILE67 ASP68 VAL69 LEU70 GLU71 MET72 HIS73 ASN74 LEU75 LEU76 THR77 GLU78 THR79 ILE80 GLN81 ASN82 PRO83 GLU84 ALA85 LEU86 LYS87 TRP88 ILE89 LEU90 ASP91 ARG92 LYS93 ILE94 THR95 ALA96 ASP97 SER98 VAL99 GLY100 LEU101 GLY102 LEU103 THR104 SER105 GLU106 LEU107 ARG108 SER109 TRP110 LEU111 GLU112 SER113 LEU114 GLU115 PRO116 ARG117 LYS118 LEU119 ALA120 GLU121 TYR122 LEU123 ILE124 GLY125 GLY126 VAL127 ALA128 ALA129 ASP130 ASP131 LEU132 PRO133 ALA134 SER135 GLU136 GLY137 ALA138 ASN139 ILE140 LEU141 LYS142 MET143 TYR144 ARG145 GLU146 TYR147 LEU148 GLY149 HIS150 SER151 SER152 PHE153 LEU154 LEU155 PRO156 PRO157 LEU158 PRO159 ASN160 THR161 GLN162 PHE163 THR164 ARG165 ASP166 THR167 THR168 CYS169 TRP170 ILE171 TYR172 GLY173 GLY174 VAL175 THR176 LEU177 ASN178 PRO179 MET180 TYR181 TRP182 PRO183 ALA184 ARG185 ARG186 GLN187 GLU188 THR189 LEU190 LEU191 THR192 THR193 ALA194 ILE195 TYR196 LYS197 PHE198 HIS199 PRO200 GLU201 PHE202 ALA203 ASN204 ALA205 GLU206 PHE207 GLU208 ILE209 TRP210 TYR211 GLY212 ASP213 PRO214 ASP215 LYS216 ASP217 HIS218 GLY219 SER220 SER221 THR222 LEU223 GLU224 GLY225 GLY226 ASP227 VAL228 MET229 PRO230 ILE231 GLY232 ASN233 GLY234 VAL235 VAL236 LEU237 ILE238 GLY239 MET240 GLY241 GLU242 ARG243 SER244 SER245 ARG246 GLN247 ALA248 ILE249 GLY250 GLN251 VAL252 ALA253 GLN254 SER255 LEU256 PHE257 ALA258 LYS259 GLY260 ALA261 ALA262 GLU263 ARG264 VAL265 ILE266 VAL267 ALA268 GLY269 LEU270 PRO271 LYS272 SER273 ARG274 ALA275 ALA276 MET277 ALA278 LEU279 ASP280 THR281 VAL282 PHE283 SER284 PHE285 CYS286 ASP287 ARG288 ASP289 LEU290 VAL291 THR292 VAL293 PHE294 PRO295 GLU296 VAL297 VAL298 LYS299 GLU300 ILE301 VAL302 PRO303 PHE304 SER305 LEU306 ARG307 PRO308 ASP309 PRO310 SER311 SER312 PRO313 TYR314 GLY315 MET316 ASN317 ILE318 ARG319 ARG320 GLU321 GLU322 LYS323 THR324 PHE325 LEU326 GLU327 VAL328 VAL329 ALA330 GLU331 SER332 LEU333 GLY334 LEU335 LYS336 LYS337 LEU338 ARG339 VAL340 VAL341 GLU342 THR343 GLY344 ARG352 GLU353 GLN354 TRP355 ASP356 ASP357 GLY358 ASN359 ASN360 VAL361 VAL362 CYS363 LEU364 GLU365 PRO366 GLY367 VAL368 VAL369 VAL370 GLY371 TYR372 ASP373 ARG374 ASN375 THR376 TYR377 THR378 ASN379 THR380 LEU381 LEU382 ARG383 LYS384 ALA385 GLY386 VAL387 GLU388 VAL389 ILE390 THR391 ILE392 SER393 ALA394 SER395 GLU396 LEU397 GLY398 ARG399 GLY400 ARG401 GLY402 GLY403 GLY404 HIS405 CYR406 MET407 THR408 CYS409 PRO410 ILE411 VAL412 ARG413 ASP414 PRO415 ILE416 ASP417
Unit 2 THR6 LYS7 LEU8 GLY9 VAL10 HIS11 SER12 GLU13 ALA14 GLY15 LYS16 LEU17 ARG18 LYS19 VAL20 MET21 VAL22 CYS23 SER24 PRO25 GLY26 LEU27 ALA28 HIS29 GLN30 ARG31 LEU32 THR33 PRO34 SER35 ASN36 CYS37 ASP38 GLU39 LEU40 LEU41 PHE42 ASP43 ASP44 VAL45 ILE46 TRP47 VAL48 ASN49 GLN50 ALA51 LYS52 ARG53 ASP54 HIS55 PHE56 ASP57 PHE58 VAL59 THR60 LYS61 MET62 ARG63 GLU64 ARG65 GLY66 ILE67 ASP68 VAL69 LEU70 GLU71 MET72 HIS73 ASN74 LEU75 LEU76 THR77 GLU78 THR79 ILE80 GLN81 ASN82 PRO83 GLU84 ALA85 LEU86 LYS87 TRP88 ILE89 LEU90 ASP91 ARG92 LYS93 ILE94 THR95 ALA96 ASP97 SER98 VAL99 GLY100 LEU101 GLY102 LEU103 THR104 SER105 GLU106 LEU107 ARG108 SER109 TRP110 LEU111 GLU112 SER113 LEU114 GLU115 PRO116 ARG117 LYS118 LEU119 ALA120 GLU121 TYR122 LEU123 ILE124 GLY125 GLY126 VAL127 ALA128 ALA129 ASP130 ASP131 LEU132 PRO133 ALA134 SER135 GLU136 GLY137 ALA138 ASN139 ILE140 LEU141 LYS142 MET143 TYR144 ARG145 GLU146 TYR147 LEU148 GLY149 HIS150 SER151 SER152 PHE153 LEU154 LEU155 PRO156 PRO157 LEU158 PRO159 ASN160 THR161 GLN162 PHE163 THR164 ARG165 ASP166 THR167 THR168 CYS169 TRP170 ILE171 TYR172 GLY173 GLY174 VAL175 THR176 LEU177 ASN178 PRO179 MET180 TYR181 TRP182 PRO183 ALA184 ARG185 ARG186 GLN187 GLU188 THR189 LEU190 LEU191 THR192 THR193 ALA194 ILE195 TYR196 LYS197 PHE198 HIS199 PRO200 GLU201 PHE202 ALA203 ASN204 ALA205 GLU206 PHE207 GLU208 ILE209 TRP210 TYR211 GLY212 ASP213 PRO214 ASP215 LYS216 ASP217 HIS218 GLY219 SER220 SER221 THR222 LEU223 GLU224 GLY225 GLY226 ASP227 VAL228 MET229 PRO230 ILE231 GLY232 ASN233 GLY234 VAL235 VAL236 LEU237 ILE238 GLY239 MET240 GLY241 GLU242 ARG243 SER244 SER245 ARG246 GLN247 ALA248 ILE249 GLY250 GLN251 VAL252 ALA253 GLN254 SER255 LEU256 PHE257 ALA258 LYS259 GLY260 ALA261 ALA262 GLU263 ARG264 VAL265 ILE266 VAL267 ALA268 GLY269 LEU270 PRO271 LYS272 SER273 ARG274 ALA275 ALA276 MET277 ALA278 LEU279 ASP280 THR281 VAL282 PHE283 SER284 PHE285 CYS286 ASP287 ARG288 ASP289 LEU290 VAL291 THR292 VAL293 PHE294 PRO295 GLU296 VAL297 VAL298 LYS299 GLU300 ILE301 VAL302 PRO303 PHE304 SER305 LEU306 ARG307 PRO308 ASP309 PRO310 SER311 SER312 PRO313 TYR314 GLY315 MET316 ASN317 ILE318 ARG319 ARG320 GLU321 GLU322 LYS323 THR324 PHE325 LEU326 GLU327 VAL328 VAL329 ALA330 GLU331 SER332 LEU333 GLY334 LEU335 LYS336 LYS337 LEU338 ARG339 VAL340 VAL341 GLU342 THR343 GLY344 ALA349 ALA350 GLU351 ARG352 GLU353 GLN354 TRP355 ASP356 ASP357 GLY358 ASN359 ASN360 VAL361 VAL362 CYS363 LEU364 GLU365 PRO366 GLY367 VAL368 VAL369 VAL370 GLY371 TYR372 ASP373 ARG374 ASN375 THR376 TYR377 THR378 ASN379 THR380 LEU381 LEU382 ARG383 LYS384 ALA385 GLY386 VAL387 GLU388 VAL389 ILE390 THR391 ILE392 SER393 ALA394 SER395 GLU396 LEU397 GLY398 ARG399 GLY400 ARG401 GLY402 GLY403 GLY404 HIS405 CYR406 MET407 THR408 CYS409 PRO410 ILE411 VAL412 ARG413 ASP414 PRO415 ILE416 ASP417 TYR418
Unit 3 LYS7 LEU8 GLY9 VAL10 HIS11 SER12 GLU13 ALA14 GLY15 LYS16 LEU17 ARG18 LYS19 VAL20 MET21 VAL22 CYS23 SER24 PRO25 GLY26 LEU27 ALA28 HIS29 GLN30 ARG31 LEU32 THR33 PRO34 SER35 ASN36 CYS37 ASP38 GLU39 LEU40 LEU41 PHE42 ASP43 ASP44 VAL45 ILE46 TRP47 VAL48 ASN49 GLN50 ALA51 LYS52 ARG53 ASP54 HIS55 PHE56 ASP57 PHE58 VAL59 THR60 LYS61 MET62 ARG63 GLU64 ARG65 GLY66 ILE67 ASP68 VAL69 LEU70 GLU71 MET72 HIS73 ASN74 LEU75 LEU76 THR77 GLU78 THR79 ILE80 GLN81 ASN82 PRO83 GLU84 ALA85 LEU86 LYS87 TRP88 ILE89 LEU90 ASP91 ARG92 LYS93 ILE94 THR95 ALA96 ASP97 SER98 VAL99 GLY100 LEU101 GLY102 LEU103 THR104 SER105 GLU106 LEU107 ARG108 SER109 TRP110 LEU111 GLU112 SER113 LEU114 GLU115 PRO116 ARG117 LYS118 LEU119 ALA120 GLU121 TYR122 LEU123 ILE124 GLY125 GLY126 VAL127 ALA128 ALA129 ASP130 ASP131 LEU132 PRO133 ALA134 SER135 GLU136 GLY137 ALA138 ASN139 ILE140 LEU141 LYS142 MET143 TYR144 ARG145 GLU146 TYR147 LEU148 GLY149 HIS150 SER151 SER152 PHE153 LEU154 LEU155 PRO156 PRO157 LEU158 PRO159 ASN160 THR161 GLN162 PHE163 THR164 ARG165 ASP166 THR167 THR168 CYS169 TRP170 ILE171 TYR172 GLY173 GLY174 VAL175 THR176 LEU177 ASN178 PRO179 MET180 TYR181 TRP182 PRO183 ALA184 ARG185 ARG186 GLN187 GLU188 THR189 LEU190 LEU191 THR192 THR193 ALA194 ILE195 TYR196 LYS197 PHE198 HIS199 PRO200 GLU201 PHE202 ALA203 ASN204 ALA205 GLU206 PHE207 GLU208 ILE209 TRP210 TYR211 GLY212 ASP213 PRO214 ASP215 LYS216 ASP217 HIS218 GLY219 SER220 SER221 THR222 LEU223 GLU224 GLY225 GLY226 ASP227 VAL228 MET229 PRO230 ILE231 GLY232 ASN233 GLY234 VAL235 VAL236 LEU237 ILE238 GLY239 MET240 GLY241 GLU242 ARG243 SER244 SER245 ARG246 GLN247 ALA248 ILE249 GLY250 GLN251 VAL252 ALA253 GLN254 SER255 LEU256 PHE257 ALA258 LYS259 GLY260 ALA261 ALA262 GLU263 ARG264 VAL265 ILE266 VAL267 ALA268 GLY269 LEU270 PRO271 LYS272 SER273 ARG274 ALA275 ALA276 MET277 ALA278 LEU279 ASP280 THR281 VAL282 PHE283 SER284 PHE285 CYS286 ASP287 ARG288 ASP289 LEU290 VAL291 THR292 VAL293 PHE294 PRO295 GLU296 VAL297 VAL298 LYS299 GLU300 ILE301 VAL302 PRO303 PHE304 SER305 LEU306 ARG307 PRO308 ASP309 PRO310 SER311 SER312 PRO313 TYR314 GLY315 MET316 ASN317 ILE318 ARG319 ARG320 GLU321 GLU322 LYS323 THR324 PHE325 LEU326 GLU327 VAL328 VAL329 ALA330 GLU331 SER332 LEU333 GLY334 LEU335 LYS336 LYS337 LEU338 ARG339 VAL340 VAL341 GLU342 THR343 GLY344 GLU351 ARG352 GLU353 GLN354 TRP355 ASP356 ASP357 GLY358 ASN359 ASN360 VAL361 VAL362 CYS363 LEU364 GLU365 PRO366 GLY367 VAL368 VAL369 VAL370 GLY371 TYR372 ASP373 ARG374 ASN375 THR376 TYR377 THR378 ASN379 THR380 LEU381 LEU382 ARG383 LYS384 ALA385 GLY386 VAL387 GLU388 VAL389 ILE390 THR391 ILE392 SER393 ALA394 SER395 GLU396 LEU397 GLY398 ARG399 GLY400 ARG401 GLY402 GLY403 GLY404 HIS405 CYR406 MET407 THR408 CYS409 PRO410 ILE411 VAL412 ARG413 ASP414 PRO415 ILE416 ASP417 TYR418
Unit 4 THR6 LYS7 LEU8 GLY9 VAL10 HIS11 SER12 GLU13 ALA14 GLY15 LYS16 LEU17 ARG18 LYS19 VAL20 MET21 VAL22 CYS23 SER24 PRO25 GLY26 LEU27 ALA28 HIS29 GLN30 ARG31 LEU32 THR33 PRO34 SER35 ASN36 CYS37 ASP38 GLU39 LEU40 LEU41 PHE42 ASP43 ASP44 VAL45 ILE46 TRP47 VAL48 ASN49 GLN50 ALA51 LYS52 ARG53 ASP54 HIS55 PHE56 ASP57 PHE58 VAL59 THR60 LYS61 MET62 ARG63 GLU64 ARG65 GLY66 ILE67 ASP68 VAL69 LEU70 GLU71 MET72 HIS73 ASN74 LEU75 LEU76 THR77 GLU78 THR79 ILE80 GLN81 ASN82 PRO83 GLU84 ALA85 LEU86 LYS87 TRP88 ILE89 LEU90 ASP91 ARG92 LYS93 ILE94 THR95 ALA96 ASP97 SER98 VAL99 GLY100 LEU101 GLY102 LEU103 THR104 SER105 GLU106 LEU107 ARG108 SER109 TRP110 LEU111 GLU112 SER113 LEU114 GLU115 PRO116 ARG117 LYS118 LEU119 ALA120 GLU121 TYR122 LEU123 ILE124 GLY125 GLY126 VAL127 ALA128 ALA129 ASP130 ASP131 LEU132 PRO133 ALA134 SER135 GLU136 GLY137 ALA138 ASN139 ILE140 LEU141 LYS142 MET143 TYR144 ARG145 GLU146 TYR147 LEU148 GLY149 HIS150 SER151 SER152 PHE153 LEU154 LEU155 PRO156 PRO157 LEU158 PRO159 ASN160 THR161 GLN162 PHE163 THR164 ARG165 ASP166 THR167 THR168 CYS169 TRP170 ILE171 TYR172 GLY173 GLY174 VAL175 THR176 LEU177 ASN178 PRO179 MET180 TYR181 TRP182 PRO183 ALA184 ARG185 ARG186 GLN187 GLU188 THR189 LEU190 LEU191 THR192 THR193 ALA194 ILE195 TYR196 LYS197 PHE198 HIS199 PRO200 GLU201 PHE202 ALA203 ASN204 ALA205 GLU206 PHE207 GLU208 ILE209 TRP210 TYR211 GLY212 ASP213 PRO214 ASP215 LYS216 ASP217 HIS218 GLY219 SER220 SER221 THR222 LEU223 GLU224 GLY225 GLY226 ASP227 VAL228 MET229 PRO230 ILE231 GLY232 ASN233 GLY234 VAL235 VAL236 LEU237 ILE238 GLY239 MET240 GLY241 GLU242 ARG243 SER244 SER245 ARG246 GLN247 ALA248 ILE249 GLY250 GLN251 VAL252 ALA253 GLN254 SER255 LEU256 PHE257 ALA258 LYS259 GLY260 ALA261 ALA262 GLU263 ARG264 VAL265 ILE266 VAL267 ALA268 GLY269 LEU270 PRO271 LYS272 SER273 ARG274 ALA275 ALA276 MET277 ALA278 LEU279 ASP280 THR281 VAL282 PHE283 SER284 PHE285 CYS286 ASP287 ARG288 ASP289 LEU290 VAL291 THR292 VAL293 PHE294 PRO295 GLU296 VAL297 VAL298 LYS299 GLU300 ILE301 VAL302 PRO303 PHE304 SER305 LEU306 ARG307 PRO308 ASP309 PRO310 SER311 SER312 PRO313 TYR314 GLY315 MET316 ASN317 ILE318 ARG319 ARG320 GLU321 GLU322 LYS323 THR324 PHE325 LEU326 GLU327 VAL328 VAL329 ALA330 GLU331 SER332 LEU333 GLY334 LEU335 LYS336 LYS337 LEU338 ARG339 VAL340 VAL341 GLU342 THR343 GLY344 ARG352 GLU353 GLN354 TRP355 ASP356 ASP357 GLY358 ASN359 ASN360 VAL361 VAL362 CYS363 LEU364 GLU365 PRO366 GLY367 VAL368 VAL369 VAL370 GLY371 TYR372 ASP373 ARG374 ASN375 THR376 TYR377 THR378 ASN379 THR380 LEU381 LEU382 ARG383 LYS384 ALA385 GLY386 VAL387 GLU388 VAL389 ILE390 THR391 ILE392 SER393 ALA394 SER395 GLU396 LEU397 GLY398 ARG399 GLY400 ARG401 GLY402 GLY403 GLY404 HIS405 CYR406 MET407 THR408 CYS409 PRO410 ILE411 VAL412 ARG413 ASP414 PRO415 ILE416 ASP417 TYR418

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany