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Sequence, Chains, Asymmetric and Biological Units

Title MOLECULAR RECOGNITION OF RNA BY NEOMYCIN AND A RESTRICTED NEOMYCIN DERIVATIVE
Keywords RIBOSOME, RNA, A-SITE. DOUBLE HELIX, NEOMYCIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2A04     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 15 325 0
2  RNA    B 14 289 0
3  RNA    C 15 325 0
4  RNA    D 14 289 0
5  Ligand   5'- R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)-3'  A 3 0 85
6  Ligand   5'- R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)-3'  C 3 0 85
7 Water     20 0 20
total       84 1228 190
Nucleic acids
Unit 1 G2 U3 G4 G5 U6 G7 A8 A9 G10 U11 C12 G13 C14 G15 G16
Unit 2 C21 G22 C23 G24 U25 C26 A27 C28 A29 C30 C31 A32 C33 C34
Unit 3 G2 U3 G4 G5 U6 G7 A8 A9 G10 U11 C12 G13 C14 G15 G16
Unit 4 C21 G22 C23 G24 U25 C26 A27 C28 A29 C30 C31 A32 C33 C34
Ligands
Unit 5 NMY17 NMY18 MG41
Unit 6 NMY1 NMY17 MG48
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany