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Sequence, Chains, Asymmetric and Biological Units

Title DNA/RNA HYBRID DUPLEX (5'-D(*GP*CP*TP*AP*TP*AP*APS*TP*GP*G)- 3')(DOT) (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') WITH A PHOSPHOROTHIOATE MOIETY
Keywords DNA, RNA, NMR, HYBRID, PHOSPHOROTHIOATE, DNA/RNA COMPLEX, DNA-RNA HYBRID
Experiment NMR
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   219D     released     available     available     Quaternary Structure Server  
NDB   219D                         


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Other macromolecule   DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3')  A 10 185 20
2  RNA    B 10 206 0
total       20 391 20

Nucleic acids
Unit 2 C11 C12 A13 U14 U15 A16 U17 A18 G19 C20

Other macromolecules
Unit 1 DG1 DC2 DT3 DA4 DT5 DA6 DA7 PST8 DG9 DG10

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany