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Sequence, Chains, Asymmetric and Biological Units

Title THE CRYSTAL STRUCTURE OF HUMAN CD1D WITH AND WITHOUT ALPHA- GALACTOSYLCERAMIDE
Keywords HUMAN CD1D, CD1, MHC CLASS I, EMPTY BINDING GROOVE, GLYCOLIP ALPHA-GALACTOSYLCERAMIDE, ALPHA-GALCER, STRUCTURAL PROTEOMI EUROPE, SPINE, STRUCTURAL GENOMICS, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1ZT4     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   T-CELL SURFACE GLYCOPROTEIN CD1D  A 272 2161 0
2  Protein   BETA-2-MICROGLOBULIN  B 100 829 0
3  Protein   T-CELL SURFACE GLYCOPROTEIN CD1D  C 278 2196 0
4  Protein   BETA-2-MICROGLOBULIN  D 100 829 0
5  Ligand   T-CELL SURFACE GLYCOPROTEIN CD1D  A 1 0 60
6 Water     18 0 18
total       769 6015 78
Proteins
Unit 1 ARG6 LEU7 PHE8 PRO9 LEU10 ARG11 CYS12 LEU13 GLN14 ILE15 SER16 SER17 PHE18 ALA19 ASN20 SER21 SER22 TRP23 THR24 ARG25 THR26 ASP27 GLY28 LEU29 ALA30 TRP31 LEU32 GLY33 GLU34 LEU35 GLN36 THR37 HIS38 SER39 TRP40 SER41 ASN42 ASP43 SER44 ASP45 THR46 VAL47 ARG48 SER49 LEU50 LYS51 PRO52 TRP53 SER54 GLN55 GLY56 THR57 PHE58 SER59 ASP60 GLN61 GLN62 TRP63 GLU64 THR65 LEU66 GLN67 HIS68 ILE69 PHE70 ARG71 VAL72 TYR73 ARG74 SER75 SER76 PHE77 THR78 ARG79 ASP80 VAL81 LYS82 GLU83 PHE84 ALA85 LYS86 MET87 LEU88 ARG89 LEU90 SER91 TYR92 PRO93 LEU94 GLU95 LEU96 GLN97 VAL98 SER99 ALA100 GLY101 CYS102 GLU103 VAL104 HIS105 PRO106 GLY107 ASN108 ALA109 SER110 ASN111 ASN112 PHE113 PHE114 HIS115 VAL116 ALA117 PHE118 GLN119 GLY120 LYS121 ASP122 ILE123 LEU124 SER125 PHE126 GLN127 GLY128 THR129 SER130 TRP131 GLU132 PRO133 THR134 GLN135 GLU136 ALA137 PRO138 LEU139 TRP140 VAL141 ASN142 LEU143 ALA144 ILE145 GLN146 VAL147 LEU148 ASN149 GLN150 ASP151 LYS152 TRP153 THR154 ARG155 GLU156 THR157 VAL158 GLN159 TRP160 LEU161 LEU162 ASN163 GLY164 THR165 CYS166 PRO167 GLN168 PHE169 VAL170 SER171 GLY172 LEU173 LEU174 GLU175 SER176 GLY177 LYS178 SER179 GLU180 LEU181 LYS182 LYS183 GLN184 VAL185 LYS186 PRO187 LYS188 ALA189 TRP190 LEU191 SER192 ARG193 GLY194 PRO195 SER196 PRO197 GLY198 PRO199 GLY200 ARG201 LEU202 LEU203 LEU204 VAL205 CYS206 HIS207 VAL208 SER209 GLY210 PHE211 TYR212 PRO213 LYS214 PRO215 VAL216 TRP217 VAL218 LYS219 TRP220 MET221 ARG222 GLY223 GLU224 GLN225 GLU226 GLN227 GLN228 GLY229 THR230 GLN231 PRO232 GLY233 ASP234 ILE235 LEU236 PRO237 ASN238 ALA239 ASP240 GLU241 THR242 TRP243 TYR244 LEU245 ARG246 ALA247 THR248 LEU249 ASP250 VAL251 VAL252 ALA253 GLY254 GLU255 ALA256 ALA257 GLY258 LEU259 SER260 CYS261 ARG262 VAL263 LYS264 HIS265 SER266 SER267 LEU268 GLU269 GLY270 GLN271 ASP272 ILE273 VAL274 LEU275 TYR276 TRP277
Unit 2 MET0 ILE1 GLN2 ARG3 THR4 PRO5 LYS6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 ALA15 GLU16 ASN17 GLY18 LYS19 SER20 ASN21 PHE22 LEU23 ASN24 CYS25 TYR26 VAL27 SER28 GLY29 PHE30 HIS31 PRO32 SER33 ASP34 ILE35 GLU36 VAL37 ASP38 LEU39 LEU40 LYS41 ASN42 GLY43 GLU44 ARG45 ILE46 GLU47 LYS48 VAL49 GLU50 HIS51 SER52 ASP53 LEU54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 LEU64 LEU65 TYR66 TYR67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 LYS75 ASP76 GLU77 TYR78 ALA79 CYS80 ARG81 VAL82 ASN83 HIS84 VAL85 THR86 LEU87 SER88 GLN89 PRO90 LYS91 ILE92 VAL93 LYS94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 3 PRO4 GLN5 ARG6 LEU7 PHE8 PRO9 LEU10 ARG11 CYS12 LEU13 GLN14 ILE15 SER16 SER17 PHE18 ALA19 ASN20 SER21 SER22 TRP23 THR24 ARG25 THR26 ASP27 GLY28 LEU29 ALA30 TRP31 LEU32 GLY33 GLU34 LEU35 GLN36 THR37 HIS38 SER39 TRP40 SER41 ASN42 ASP43 SER44 ASP45 THR46 VAL47 ARG48 SER49 LEU50 LYS51 PRO52 TRP53 SER54 GLN55 GLY56 THR57 PHE58 SER59 ASP60 GLN61 GLN62 TRP63 GLU64 THR65 LEU66 GLN67 HIS68 ILE69 PHE70 ARG71 VAL72 TYR73 ARG74 SER75 SER76 PHE77 THR78 ARG79 ASP80 VAL81 LYS82 GLU83 PHE84 ALA85 LYS86 MET87 LEU88 ARG89 LEU90 SER91 TYR92 PRO93 LEU94 GLU95 LEU96 GLN97 VAL98 SER99 ALA100 GLY101 CYS102 GLU103 VAL104 HIS105 PRO106 GLY107 ASN108 ALA109 SER110 ASN111 ASN112 PHE113 PHE114 HIS115 VAL116 ALA117 PHE118 GLN119 GLY120 LYS121 ASP122 ILE123 LEU124 SER125 PHE126 GLN127 GLY128 THR129 SER130 TRP131 GLU132 PRO133 THR134 GLN135 GLU136 ALA137 PRO138 LEU139 TRP140 VAL141 ASN142 LEU143 ALA144 ILE145 GLN146 VAL147 LEU148 ASN149 GLN150 ASP151 LYS152 TRP153 THR154 ARG155 GLU156 THR157 VAL158 GLN159 TRP160 LEU161 LEU162 ASN163 GLY164 THR165 CYS166 PRO167 GLN168 PHE169 VAL170 SER171 GLY172 LEU173 LEU174 GLU175 SER176 GLY177 LYS178 SER179 GLU180 LEU181 LYS182 LYS183 GLN184 VAL185 LYS186 PRO187 LYS188 ALA189 TRP190 LEU191 SER192 ARG193 GLY194 PRO195 SER196 PRO197 GLY198 PRO199 GLY200 ARG201 LEU202 LEU203 LEU204 VAL205 CYS206 HIS207 VAL208 SER209 GLY210 PHE211 TYR212 PRO213 LYS214 PRO215 VAL216 TRP217 VAL218 LYS219 TRP220 MET221 ARG222 GLY223 GLU224 GLN225 GLU226 GLN227 GLN228 GLY229 THR230 GLN231 PRO232 GLY233 ASP234 ILE235 LEU236 PRO237 ASN238 ALA239 ASP240 GLU241 THR242 TRP243 TYR244 LEU245 ARG246 ALA247 THR248 LEU249 ASP250 VAL251 VAL252 ALA253 GLY254 GLU255 ALA256 ALA257 GLY258 LEU259 SER260 CYS261 ARG262 VAL263 LYS264 HIS265 SER266 SER267 LEU268 GLU269 GLY270 GLN271 ASP272 ILE273 VAL274 LEU275 TYR276 TRP277 GLY278 GLY279 SER280 TYR281
Unit 4 MET0 ILE1 GLN2 ARG3 THR4 PRO5 LYS6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 ALA15 GLU16 ASN17 GLY18 LYS19 SER20 ASN21 PHE22 LEU23 ASN24 CYS25 TYR26 VAL27 SER28 GLY29 PHE30 HIS31 PRO32 SER33 ASP34 ILE35 GLU36 VAL37 ASP38 LEU39 LEU40 LYS41 ASN42 GLY43 GLU44 ARG45 ILE46 GLU47 LYS48 VAL49 GLU50 HIS51 SER52 ASP53 LEU54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 LEU64 LEU65 TYR66 TYR67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 LYS75 ASP76 GLU77 TYR78 ALA79 CYS80 ARG81 VAL82 ASN83 HIS84 VAL85 THR86 LEU87 SER88 GLN89 PRO90 LYS91 ILE92 VAL93 LYS94 TRP95 ASP96 ARG97 ASP98 MET99
Ligands
Unit 5 AGH282
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany