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Sequence, Chains, Asymmetric and Biological Units

Title GLUTAMINYL-TRNA SYNTHETASE COMPLEXED TO GLUTAMINE AND 2'DEOXY A76 GLUTAMINE TRNA
Keywords PROTEIN-RNA COMPLEX, LIGASE/RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1ZJW     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA/RNA    B 74 1569 0
2  Protein   GLUTAMINYL-TRNA SYNTHETASE  A 529 4279 0
3  Protein   GLUTAMINYL-TRNA SYNTHETASE  A 4 0 43
4 Water     142 0 142
total       749 5848 185

Proteins
Unit 2 THR8 ASN9 PHE10 ILE11 ARG12 GLN13 ILE14 ILE15 ASP16 GLU17 ASP18 LEU19 ALA20 SER21 GLY22 LYS23 HIS24 THR25 THR26 VAL27 HIS28 THR29 ARG30 PHE31 PRO32 PRO33 GLU34 PRO35 ASN36 GLY37 TYR38 LEU39 HIS40 ILE41 GLY42 HIS43 ALA44 LYS45 SER46 ILE47 CYS48 LEU49 ASN50 PHE51 GLY52 ILE53 ALA54 GLN55 ASP56 TYR57 LYS58 GLY59 GLN60 CYS61 ASN62 LEU63 ARG64 PHE65 ASP66 ASP67 THR68 ASN69 PRO70 VAL71 LYS72 GLU73 ASP74 ILE75 GLU76 TYR77 VAL78 GLU79 SER80 ILE81 LYS82 ASN83 ASP84 VAL85 GLU86 TRP87 LEU88 GLY89 PHE90 HIS91 TRP92 SER93 GLY94 ASN95 VAL96 ARG97 TYR98 SER99 SER100 ASP101 TYR102 PHE103 ASP104 GLN105 LEU106 HIS107 ALA108 TYR109 ALA110 ILE111 GLU112 LEU113 ILE114 ASN115 LYS116 GLY117 LEU118 ALA119 TYR120 VAL121 ASP122 GLU123 LEU124 THR125 PRO126 GLU127 GLN128 ILE129 ARG130 GLU131 TYR132 ARG133 GLY134 THR135 LEU136 THR137 GLN138 PRO139 GLY140 LYS141 ASN142 SER143 PRO144 TYR145 ARG146 ASP147 ARG148 SER149 VAL150 GLU151 GLU152 ASN153 LEU154 ALA155 LEU156 PHE157 GLU158 LYS159 MET160 ARG161 ALA162 GLY163 GLY164 PHE165 GLU166 GLU167 GLY168 LYS169 ALA170 CYS171 LEU172 ARG173 ALA174 LYS175 ILE176 ASP177 MET178 ALA179 SER180 PRO181 PHE182 ILE183 VAL184 MET185 ARG186 ASP187 PRO188 VAL189 LEU190 TYR191 ARG192 ILE193 LYS194 PHE195 ALA196 GLU197 HIS198 HIS199 GLN200 THR201 GLY202 ASN203 LYS204 TRP205 CYS206 ILE207 TYR208 PRO209 MET210 TYR211 ASP212 PHE213 THR214 HIS215 CYS216 ILE217 SER218 ASP219 ALA220 LEU221 GLU222 GLY223 ILE224 THR225 HIS226 SER227 LEU228 CYS229 THR230 LEU231 GLU232 PHE233 GLN234 ASP235 ASN236 ARG237 ARG238 LEU239 TYR240 ASP241 TRP242 VAL243 LEU244 ASP245 ASN246 ILE247 THR248 ILE249 PRO250 VAL251 HIS252 PRO253 ARG254 GLN255 TYR256 GLU257 PHE258 SER259 ARG260 LEU261 ASN262 LEU263 GLU264 TYR265 THR266 VAL267 MET268 SER269 LYS270 ARG271 LYS272 LEU273 ASN274 LEU275 LEU276 VAL277 THR278 ASP279 LYS280 HIS281 VAL282 GLU283 GLY284 TRP285 ASP286 ASP287 PRO288 ARG289 MET290 PRO291 THR292 ILE293 SER294 GLY295 LEU296 ARG297 ARG298 ARG299 GLY300 TYR301 THR302 ALA303 ALA304 SER305 ILE306 ARG307 GLU308 PHE309 CYS310 LYS311 ARG312 ILE313 GLY314 VAL315 THR316 LYS317 GLN318 ASP319 ASN320 THR321 ILE322 GLU323 MET324 ALA325 SER326 LEU327 GLU328 SER329 CYS330 ILE331 ARG332 GLU333 ASP334 LEU335 ASN336 GLU337 ASN338 ALA339 PRO340 ARG341 ALA342 MET343 ALA344 VAL345 ILE346 ASP347 PRO348 VAL349 LYS350 LEU351 VAL352 ILE353 GLU354 ASN355 TYR356 GLN357 GLY358 GLU359 GLY360 GLU361 MET362 VAL363 THR364 MET365 PRO366 ASN367 HIS368 PRO369 ASN370 LYS371 PRO372 GLU373 MET374 GLY375 SER376 ARG377 GLN378 VAL379 PRO380 PHE381 SER382 GLY383 GLU384 ILE385 TRP386 ILE387 ASP388 ARG389 ALA390 ASP391 PHE392 ARG393 GLU394 GLU395 ALA396 ASN397 LYS398 GLN399 TYR400 LYS401 ARG402 LEU403 VAL404 LEU405 GLY406 LYS407 GLU408 VAL409 ARG410 LEU411 ARG412 ASN413 ALA414 TYR415 VAL416 ILE417 LYS418 ALA419 GLU420 ARG421 VAL422 GLU423 LYS424 ASP425 ALA426 GLU427 GLY428 ASN429 ILE430 THR431 THR432 ILE433 PHE434 CYS435 THR436 TYR437 ASP438 ALA439 ASP440 THR441 LEU442 GLY454 VAL455 ILE456 HIS457 TRP458 VAL459 SER460 ALA461 ALA462 HIS463 ALA464 LEU465 PRO466 VAL467 GLU468 ILE469 ARG470 LEU471 TYR472 ASP473 ARG474 LEU475 PHE476 SER477 VAL478 PRO479 ASN480 PRO481 GLY482 ALA483 ALA484 ASP485 ASP486 PHE487 LEU488 SER489 VAL490 ILE491 ASN492 PRO493 GLU494 SER495 LEU496 VAL497 ILE498 LYS499 GLN500 GLY501 PHE502 ALA503 GLU504 PRO505 SER506 LEU507 LYS508 ASP509 ALA510 VAL511 ALA512 GLY513 LYS514 ALA515 PHE516 GLN517 PHE518 GLU519 ARG520 GLU521 GLY522 TYR523 PHE524 CYS525 LEU526 ASP527 SER528 ARG529 HIS530 SER531 THR532 ALA533 GLU534 LYS535 PRO536 VAL537 PHE538 ASN539 ARG540 THR541 VAL542 GLY543 LEU544 ARG545 ASP546 THR547
Unit 3 GLN996 AMP998 SO41394 SO41395

Nucleic acids
Unit 1 G902 G903 G904 G905 U906 A907 U908 C909 G910 C911 C912 A913 A914 G915 C916 G918 G919 U920 A921 A922 G923 G924 C925 A926 C927 C928 G929 G930 A931 U932 U933 C934 U935 G936 A937 U938 U939 C940 C941 G942 G943 C944 A945 U946 U947 C948 C949 G950 A951 G952 G953 U954 U955 C956 G957 A958 A959 U960 C961 C962 U963 C964 G965 U966 A967 C968 C969 C970 C971 A972 G973 C974 C975 A976

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany