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Sequence, Chains, Asymmetric and Biological Units

Title 3'-END SPECIFIC RECOGNITION OF HISTONE MRNA STEM-LOOP BY 3'- EXONUCLEASE
Keywords HISTONE MRNA 3'-END-SPECIFIC RECOGNITION; STRUCTURES OF 3'- EXONUCLEASE AND ITS RNA COMPLEX, HYDROLASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1ZBH     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    F 16 333 0
2  RNA    E 16 333 0
3  Protein   3'-5' EXONUCLEASE ERI1  A 289 2354 0
4  Protein   3'-5' EXONUCLEASE ERI1  B 225 1823 0
5  Protein   3'-5' EXONUCLEASE ERI1  C 225 1823 0
6  Protein   3'-5' EXONUCLEASE ERI1  D 289 2354 0
7  Ligand   3'-5' EXONUCLEASE ERI1  A 3 0 25
8  Ligand   3'-5' EXONUCLEASE ERI1  B 3 0 25
9  Ligand   3'-5' EXONUCLEASE ERI1  C 3 0 25
10  Ligand   3'-5' EXONUCLEASE ERI1  D 3 0 25
11 Water     18 0 18
total       1090 9020 118
Proteins
Unit 3 ASP60 PHE61 SER62 ASP63 PRO64 VAL65 TYR66 LYS67 GLU68 ILE69 ALA70 ILE71 THR72 ASN73 GLY74 CYS75 ILE76 ASN77 ARG78 MET79 SER80 LYS81 GLU82 GLU83 LEU84 ARG85 ALA86 LYS87 LEU88 SER89 GLU90 PHE91 LYS92 LEU93 GLU94 THR95 ARG96 GLY97 VAL98 LYS99 ASP100 VAL101 LEU102 LYS103 LYS104 ARG105 LEU106 LYS107 ASN108 TYR109 TYR110 LYS111 LYS112 GLN113 LYS114 LEU115 MET116 LEU117 LYS118 GLU119 SER120 ASN121 PHE122 ALA123 ASP124 SER125 TYR126 TYR127 ASP128 TYR129 ILE130 CYS131 ILE132 ILE133 ASP134 PHE135 GLU136 ALA137 THR138 CYS139 GLU140 GLU141 GLY142 ASN143 PRO144 PRO145 GLU146 PHE147 VAL148 HIS149 GLU150 ILE151 ILE152 GLU153 PHE154 PRO155 VAL156 VAL157 LEU158 LEU159 ASN160 THR161 HIS162 THR163 LEU164 GLU165 ILE166 GLU167 ASP168 THR169 PHE170 GLN171 GLN172 TYR173 VAL174 ARG175 PRO176 GLU177 ILE178 ASN179 THR180 GLN181 LEU182 SER183 ASP184 PHE185 CYS186 ILE187 SER188 LEU189 THR190 GLY191 ILE192 THR193 GLN194 ASP195 GLN196 VAL197 ASP198 ARG199 ALA200 ASP201 THR202 PHE203 PRO204 GLN205 VAL206 LEU207 LYS208 LYS209 VAL210 ILE211 ASP212 LEU213 MET214 LYS215 LEU216 LYS217 GLU218 LEU219 GLY220 THR221 LYS222 TYR223 LYS224 TYR225 SER226 LEU227 LEU228 THR229 ASP230 GLY231 SER232 TRP233 ASP234 MET235 SER236 LYS237 PHE238 LEU239 ASN240 ILE241 GLN242 CYS243 GLN244 LEU245 SER246 ARG247 LEU248 LYS249 TYR250 PRO251 PRO252 PHE253 ALA254 LYS255 LYS256 TRP257 ILE258 ASN259 ILE260 ARG261 LYS262 SER263 TYR264 GLY265 ASN266 PHE267 TYR268 LYS269 VAL270 PRO271 ARG272 SER273 GLN274 THR275 LYS276 LEU277 THR278 ILE279 MET280 LEU281 GLU282 LYS283 LEU284 GLY285 MET286 ASP287 TYR288 ASP289 GLY290 ARG291 PRO292 ASN293 CYS294 GLY295 LEU296 ASP297 ASP298 SER299 LYS300 ASN301 ILE302 ALA303 ARG304 ILE305 ALA306 VAL307 ARG308 MET309 LEU310 GLN311 ASP312 GLY313 CYS314 GLU315 LEU316 ARG317 ILE318 ASN319 GLU320 LYS321 MET322 HIS323 ALA324 GLY325 GLN326 LEU327 MET328 SER329 VAL330 SER331 SER332 SER333 LEU334 PRO335 ILE336 GLU337 GLY338 THR339 PRO340 PRO341 PRO342 GLN343 MET344 PRO345 HIS346 PHE347 ARG348
Unit 4 ASP124 SER125 TYR126 TYR127 ASP128 TYR129 ILE130 CYS131 ILE132 ILE133 ASP134 PHE135 GLU136 ALA137 THR138 CYS139 GLU140 GLU141 GLY142 ASN143 PRO144 PRO145 GLU146 PHE147 VAL148 HIS149 GLU150 ILE151 ILE152 GLU153 PHE154 PRO155 VAL156 VAL157 LEU158 LEU159 ASN160 THR161 HIS162 THR163 LEU164 GLU165 ILE166 GLU167 ASP168 THR169 PHE170 GLN171 GLN172 TYR173 VAL174 ARG175 PRO176 GLU177 ILE178 ASN179 THR180 GLN181 LEU182 SER183 ASP184 PHE185 CYS186 ILE187 SER188 LEU189 THR190 GLY191 ILE192 THR193 GLN194 ASP195 GLN196 VAL197 ASP198 ARG199 ALA200 ASP201 THR202 PHE203 PRO204 GLN205 VAL206 LEU207 LYS208 LYS209 VAL210 ILE211 ASP212 LEU213 MET214 LYS215 LEU216 LYS217 GLU218 LEU219 GLY220 THR221 LYS222 TYR223 LYS224 TYR225 SER226 LEU227 LEU228 THR229 ASP230 GLY231 SER232 TRP233 ASP234 MET235 SER236 LYS237 PHE238 LEU239 ASN240 ILE241 GLN242 CYS243 GLN244 LEU245 SER246 ARG247 LEU248 LYS249 TYR250 PRO251 PRO252 PHE253 ALA254 LYS255 LYS256 TRP257 ILE258 ASN259 ILE260 ARG261 LYS262 SER263 TYR264 GLY265 ASN266 PHE267 TYR268 LYS269 VAL270 PRO271 ARG272 SER273 GLN274 THR275 LYS276 LEU277 THR278 ILE279 MET280 LEU281 GLU282 LYS283 LEU284 GLY285 MET286 ASP287 TYR288 ASP289 GLY290 ARG291 PRO292 ASN293 CYS294 GLY295 LEU296 ASP297 ASP298 SER299 LYS300 ASN301 ILE302 ALA303 ARG304 ILE305 ALA306 VAL307 ARG308 MET309 LEU310 GLN311 ASP312 GLY313 CYS314 GLU315 LEU316 ARG317 ILE318 ASN319 GLU320 LYS321 MET322 HIS323 ALA324 GLY325 GLN326 LEU327 MET328 SER329 VAL330 SER331 SER332 SER333 LEU334 PRO335 ILE336 GLU337 GLY338 THR339 PRO340 PRO341 PRO342 GLN343 MET344 PRO345 HIS346 PHE347 ARG348
Unit 5 ASP124 SER125 TYR126 TYR127 ASP128 TYR129 ILE130 CYS131 ILE132 ILE133 ASP134 PHE135 GLU136 ALA137 THR138 CYS139 GLU140 GLU141 GLY142 ASN143 PRO144 PRO145 GLU146 PHE147 VAL148 HIS149 GLU150 ILE151 ILE152 GLU153 PHE154 PRO155 VAL156 VAL157 LEU158 LEU159 ASN160 THR161 HIS162 THR163 LEU164 GLU165 ILE166 GLU167 ASP168 THR169 PHE170 GLN171 GLN172 TYR173 VAL174 ARG175 PRO176 GLU177 ILE178 ASN179 THR180 GLN181 LEU182 SER183 ASP184 PHE185 CYS186 ILE187 SER188 LEU189 THR190 GLY191 ILE192 THR193 GLN194 ASP195 GLN196 VAL197 ASP198 ARG199 ALA200 ASP201 THR202 PHE203 PRO204 GLN205 VAL206 LEU207 LYS208 LYS209 VAL210 ILE211 ASP212 LEU213 MET214 LYS215 LEU216 LYS217 GLU218 LEU219 GLY220 THR221 LYS222 TYR223 LYS224 TYR225 SER226 LEU227 LEU228 THR229 ASP230 GLY231 SER232 TRP233 ASP234 MET235 SER236 LYS237 PHE238 LEU239 ASN240 ILE241 GLN242 CYS243 GLN244 LEU245 SER246 ARG247 LEU248 LYS249 TYR250 PRO251 PRO252 PHE253 ALA254 LYS255 LYS256 TRP257 ILE258 ASN259 ILE260 ARG261 LYS262 SER263 TYR264 GLY265 ASN266 PHE267 TYR268 LYS269 VAL270 PRO271 ARG272 SER273 GLN274 THR275 LYS276 LEU277 THR278 ILE279 MET280 LEU281 GLU282 LYS283 LEU284 GLY285 MET286 ASP287 TYR288 ASP289 GLY290 ARG291 PRO292 ASN293 CYS294 GLY295 LEU296 ASP297 ASP298 SER299 LYS300 ASN301 ILE302 ALA303 ARG304 ILE305 ALA306 VAL307 ARG308 MET309 LEU310 GLN311 ASP312 GLY313 CYS314 GLU315 LEU316 ARG317 ILE318 ASN319 GLU320 LYS321 MET322 HIS323 ALA324 GLY325 GLN326 LEU327 MET328 SER329 VAL330 SER331 SER332 SER333 LEU334 PRO335 ILE336 GLU337 GLY338 THR339 PRO340 PRO341 PRO342 GLN343 MET344 PRO345 HIS346 PHE347 ARG348
Unit 6 ASP60 PHE61 SER62 ASP63 PRO64 VAL65 TYR66 LYS67 GLU68 ILE69 ALA70 ILE71 THR72 ASN73 GLY74 CYS75 ILE76 ASN77 ARG78 MET79 SER80 LYS81 GLU82 GLU83 LEU84 ARG85 ALA86 LYS87 LEU88 SER89 GLU90 PHE91 LYS92 LEU93 GLU94 THR95 ARG96 GLY97 VAL98 LYS99 ASP100 VAL101 LEU102 LYS103 LYS104 ARG105 LEU106 LYS107 ASN108 TYR109 TYR110 LYS111 LYS112 GLN113 LYS114 LEU115 MET116 LEU117 LYS118 GLU119 SER120 ASN121 PHE122 ALA123 ASP124 SER125 TYR126 TYR127 ASP128 TYR129 ILE130 CYS131 ILE132 ILE133 ASP134 PHE135 GLU136 ALA137 THR138 CYS139 GLU140 GLU141 GLY142 ASN143 PRO144 PRO145 GLU146 PHE147 VAL148 HIS149 GLU150 ILE151 ILE152 GLU153 PHE154 PRO155 VAL156 VAL157 LEU158 LEU159 ASN160 THR161 HIS162 THR163 LEU164 GLU165 ILE166 GLU167 ASP168 THR169 PHE170 GLN171 GLN172 TYR173 VAL174 ARG175 PRO176 GLU177 ILE178 ASN179 THR180 GLN181 LEU182 SER183 ASP184 PHE185 CYS186 ILE187 SER188 LEU189 THR190 GLY191 ILE192 THR193 GLN194 ASP195 GLN196 VAL197 ASP198 ARG199 ALA200 ASP201 THR202 PHE203 PRO204 GLN205 VAL206 LEU207 LYS208 LYS209 VAL210 ILE211 ASP212 LEU213 MET214 LYS215 LEU216 LYS217 GLU218 LEU219 GLY220 THR221 LYS222 TYR223 LYS224 TYR225 SER226 LEU227 LEU228 THR229 ASP230 GLY231 SER232 TRP233 ASP234 MET235 SER236 LYS237 PHE238 LEU239 ASN240 ILE241 GLN242 CYS243 GLN244 LEU245 SER246 ARG247 LEU248 LYS249 TYR250 PRO251 PRO252 PHE253 ALA254 LYS255 LYS256 TRP257 ILE258 ASN259 ILE260 ARG261 LYS262 SER263 TYR264 GLY265 ASN266 PHE267 TYR268 LYS269 VAL270 PRO271 ARG272 SER273 GLN274 THR275 LYS276 LEU277 THR278 ILE279 MET280 LEU281 GLU282 LYS283 LEU284 GLY285 MET286 ASP287 TYR288 ASP289 GLY290 ARG291 PRO292 ASN293 CYS294 GLY295 LEU296 ASP297 ASP298 SER299 LYS300 ASN301 ILE302 ALA303 ARG304 ILE305 ALA306 VAL307 ARG308 MET309 LEU310 GLN311 ASP312 GLY313 CYS314 GLU315 LEU316 ARG317 ILE318 ASN319 GLU320 LYS321 MET322 HIS323 ALA324 GLY325 GLN326 LEU327 MET328 SER329 VAL330 SER331 SER332 SER333 LEU334 PRO335 ILE336 GLU337 GLY338 THR339 PRO340 PRO341 PRO342 GLN343 MET344 PRO345 HIS346 PHE347 ARG348
Nucleic acids
Unit 1 G6 G7 C8 U9 C10 U11 U12 U13 U14 C15 A16 G17 A18 G19 C20 C21
Unit 2 G6 G7 C8 U9 C10 U11 U12 U13 U14 C15 A16 G17 A18 G19 C20 C21
Ligands
Unit 7 MG1000 MG1001 AMP1002
Unit 8 MG2000 MG2001 AMP2002
Unit 9 MG3000 MG3001 AMP3002
Unit 10 MG4000 MG4001 AMP4002
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany