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Sequence, Chains, Asymmetric and Biological Units

Title LACTOSE OPERON REPRESSOR COMPLEXED WITH DNA
Keywords PROTEIN-DNA COMPLEX, TETRAMER, HEADGROUP, HELICAL BUNDLE
Experiment theoretical model
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1Z04     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LACTOSE OPERON REPRESSOR  A 357 5439 0
2  Protein   LACTOSE OPERON REPRESSOR  B 357 5439 0
3  Protein   LACTOSE OPERON REPRESSOR  C 357 5439 0
4  Protein   LACTOSE OPERON REPRESSOR  D 357 5439 0
5  DNA    E 16 507 0
6  DNA    F 16 507 0
7  DNA    G 16 507 0
8  DNA    H 16 507 0
total       1492 23784 0
Proteins
Unit 1 MET1 LYS2 PRO3 VAL4 THR5 LEU6 TYR7 ASP8 VAL9 ALA10 GLU11 TYR12 ALA13 GLY14 VAL15 SER16 TYR17 GLN18 THR19 VAL20 SER21 ARG22 VAL23 VAL24 ASN25 GLN26 ALA27 SER28 HIS29 VAL30 SER31 ALA32 LYS33 THR34 ARG35 GLU36 LYS37 VAL38 GLU39 ALA40 ALA41 MET42 ALA43 GLU44 LEU45 ASN46 TYR47 ILE48 PRO49 ASN50 ARG51 VAL52 ALA53 GLN54 GLN55 LEU56 ALA57 GLY58 LYS59 GLN60 SER61 LEU62 LEU63 ILE64 GLY65 VAL66 ALA67 THR68 SER69 SER70 LEU71 ALA72 LEU73 HIS74 ALA75 PRO76 SER77 GLN78 ILE79 VAL80 ALA81 ALA82 ILE83 LYS84 SER85 ARG86 ALA87 ASP88 GLN89 LEU90 GLY91 ALA92 SER93 VAL94 VAL95 VAL96 SER97 MET98 VAL99 GLU100 ARG101 SER102 GLY103 VAL104 GLU105 ALA106 CYS107 LYS108 THR109 ALA110 VAL111 HIS112 ASN113 LEU114 LEU115 ALA116 GLN117 ARG118 VAL119 SER120 GLY121 LEU122 ILE123 ILE124 ASN125 TYR126 PRO127 LEU128 ASP129 ASP130 GLN131 ASP132 ALA133 ILE134 ALA135 VAL136 GLU137 ALA138 ALA139 CYS140 THR141 ASN142 VAL143 PRO144 ALA145 LEU146 PHE147 LEU148 ASP149 VAL150 SER151 ASP152 GLN153 THR154 PRO155 ILE156 ASN157 SER158 ILE159 ILE160 PHE161 SER162 HIS163 GLU164 ASP165 GLY166 THR167 ARG168 LEU169 GLY170 VAL171 GLU172 HIS173 LEU174 VAL175 ALA176 LEU177 GLY178 HIS179 GLN180 GLN181 ILE182 ALA183 LEU184 LEU185 ALA186 GLY187 PRO188 LEU189 SER190 SER191 VAL192 SER193 ALA194 ARG195 LEU196 ARG197 LEU198 ALA199 GLY200 TRP201 HIS202 LYS203 TYR204 LEU205 THR206 ARG207 ASN208 GLN209 ILE210 GLN211 PRO212 ILE213 ALA214 GLU215 ARG216 GLU217 GLY218 ASP219 TRP220 SER221 ALA222 MET223 SER224 GLY225 PHE226 GLN227 GLN228 THR229 MET230 GLN231 MET232 LEU233 ASN234 GLU235 GLY236 ILE237 VAL238 PRO239 THR240 ALA241 MET242 LEU243 VAL244 ALA245 ASN246 ASP247 GLN248 MET249 ALA250 LEU251 GLY252 ALA253 MET254 ARG255 ALA256 ILE257 THR258 GLU259 SER260 GLY261 LEU262 ARG263 VAL264 GLY265 ALA266 ASP267 ILE268 SER269 VAL270 VAL271 GLY272 TYR273 ASP274 ASP275 THR276 GLU277 ASP278 SER279 SER280 CYS281 TYR282 ILE283 PRO284 PRO285 LEU286 THR287 THR288 ILE289 LYS290 GLN291 ASP292 PHE293 ARG294 LEU295 LEU296 GLY297 GLN298 THR299 SER300 VAL301 ASP302 ARG303 LEU304 LEU305 GLN306 LEU307 SER308 GLN309 GLY310 GLN311 ALA312 VAL313 LYS314 GLY315 ASN316 GLN317 LEU318 LEU319 PRO320 VAL321 SER322 LEU323 VAL324 LYS325 ARG326 LYS327 THR328 THR329 LEU330 ALA331 PRO332 ASN333 THR334 GLN335 THR336 ALA337 SER338 PRO339 ARG340 ALA341 LEU342 ALA343 ASP344 SER345 LEU346 MET347 GLN348 LEU349 ALA350 ARG351 GLN352 VAL353 SER354 ARG355 LEU356 GLU357
Unit 2 MET1 LYS2 PRO3 VAL4 THR5 LEU6 TYR7 ASP8 VAL9 ALA10 GLU11 TYR12 ALA13 GLY14 VAL15 SER16 TYR17 GLN18 THR19 VAL20 SER21 ARG22 VAL23 VAL24 ASN25 GLN26 ALA27 SER28 HIS29 VAL30 SER31 ALA32 LYS33 THR34 ARG35 GLU36 LYS37 VAL38 GLU39 ALA40 ALA41 MET42 ALA43 GLU44 LEU45 ASN46 TYR47 ILE48 PRO49 ASN50 ARG51 VAL52 ALA53 GLN54 GLN55 LEU56 ALA57 GLY58 LYS59 GLN60 SER61 LEU62 LEU63 ILE64 GLY65 VAL66 ALA67 THR68 SER69 SER70 LEU71 ALA72 LEU73 HIS74 ALA75 PRO76 SER77 GLN78 ILE79 VAL80 ALA81 ALA82 ILE83 LYS84 SER85 ARG86 ALA87 ASP88 GLN89 LEU90 GLY91 ALA92 SER93 VAL94 VAL95 VAL96 SER97 MET98 VAL99 GLU100 ARG101 SER102 GLY103 VAL104 GLU105 ALA106 CYS107 LYS108 THR109 ALA110 VAL111 HIS112 ASN113 LEU114 LEU115 ALA116 GLN117 ARG118 VAL119 SER120 GLY121 LEU122 ILE123 ILE124 ASN125 TYR126 PRO127 LEU128 ASP129 ASP130 GLN131 ASP132 ALA133 ILE134 ALA135 VAL136 GLU137 ALA138 ALA139 CYS140 THR141 ASN142 VAL143 PRO144 ALA145 LEU146 PHE147 LEU148 ASP149 VAL150 SER151 ASP152 GLN153 THR154 PRO155 ILE156 ASN157 SER158 ILE159 ILE160 PHE161 SER162 HIS163 GLU164 ASP165 GLY166 THR167 ARG168 LEU169 GLY170 VAL171 GLU172 HIS173 LEU174 VAL175 ALA176 LEU177 GLY178 HIS179 GLN180 GLN181 ILE182 ALA183 LEU184 LEU185 ALA186 GLY187 PRO188 LEU189 SER190 SER191 VAL192 SER193 ALA194 ARG195 LEU196 ARG197 LEU198 ALA199 GLY200 TRP201 HIS202 LYS203 TYR204 LEU205 THR206 ARG207 ASN208 GLN209 ILE210 GLN211 PRO212 ILE213 ALA214 GLU215 ARG216 GLU217 GLY218 ASP219 TRP220 SER221 ALA222 MET223 SER224 GLY225 PHE226 GLN227 GLN228 THR229 MET230 GLN231 MET232 LEU233 ASN234 GLU235 GLY236 ILE237 VAL238 PRO239 THR240 ALA241 MET242 LEU243 VAL244 ALA245 ASN246 ASP247 GLN248 MET249 ALA250 LEU251 GLY252 ALA253 MET254 ARG255 ALA256 ILE257 THR258 GLU259 SER260 GLY261 LEU262 ARG263 VAL264 GLY265 ALA266 ASP267 ILE268 SER269 VAL270 VAL271 GLY272 TYR273 ASP274 ASP275 THR276 GLU277 ASP278 SER279 SER280 CYS281 TYR282 ILE283 PRO284 PRO285 LEU286 THR287 THR288 ILE289 LYS290 GLN291 ASP292 PHE293 ARG294 LEU295 LEU296 GLY297 GLN298 THR299 SER300 VAL301 ASP302 ARG303 LEU304 LEU305 GLN306 LEU307 SER308 GLN309 GLY310 GLN311 ALA312 VAL313 LYS314 GLY315 ASN316 GLN317 LEU318 LEU319 PRO320 VAL321 SER322 LEU323 VAL324 LYS325 ARG326 LYS327 THR328 THR329 LEU330 ALA331 PRO332 ASN333 THR334 GLN335 THR336 ALA337 SER338 PRO339 ARG340 ALA341 LEU342 ALA343 ASP344 SER345 LEU346 MET347 GLN348 LEU349 ALA350 ARG351 GLN352 VAL353 SER354 ARG355 LEU356 GLU357
Unit 3 MET1 LYS2 PRO3 VAL4 THR5 LEU6 TYR7 ASP8 VAL9 ALA10 GLU11 TYR12 ALA13 GLY14 VAL15 SER16 TYR17 GLN18 THR19 VAL20 SER21 ARG22 VAL23 VAL24 ASN25 GLN26 ALA27 SER28 HIS29 VAL30 SER31 ALA32 LYS33 THR34 ARG35 GLU36 LYS37 VAL38 GLU39 ALA40 ALA41 MET42 ALA43 GLU44 LEU45 ASN46 TYR47 ILE48 PRO49 ASN50 ARG51 VAL52 ALA53 GLN54 GLN55 LEU56 ALA57 GLY58 LYS59 GLN60 SER61 LEU62 LEU63 ILE64 GLY65 VAL66 ALA67 THR68 SER69 SER70 LEU71 ALA72 LEU73 HIS74 ALA75 PRO76 SER77 GLN78 ILE79 VAL80 ALA81 ALA82 ILE83 LYS84 SER85 ARG86 ALA87 ASP88 GLN89 LEU90 GLY91 ALA92 SER93 VAL94 VAL95 VAL96 SER97 MET98 VAL99 GLU100 ARG101 SER102 GLY103 VAL104 GLU105 ALA106 CYS107 LYS108 THR109 ALA110 VAL111 HIS112 ASN113 LEU114 LEU115 ALA116 GLN117 ARG118 VAL119 SER120 GLY121 LEU122 ILE123 ILE124 ASN125 TYR126 PRO127 LEU128 ASP129 ASP130 GLN131 ASP132 ALA133 ILE134 ALA135 VAL136 GLU137 ALA138 ALA139 CYS140 THR141 ASN142 VAL143 PRO144 ALA145 LEU146 PHE147 LEU148 ASP149 VAL150 SER151 ASP152 GLN153 THR154 PRO155 ILE156 ASN157 SER158 ILE159 ILE160 PHE161 SER162 HIS163 GLU164 ASP165 GLY166 THR167 ARG168 LEU169 GLY170 VAL171 GLU172 HIS173 LEU174 VAL175 ALA176 LEU177 GLY178 HIS179 GLN180 GLN181 ILE182 ALA183 LEU184 LEU185 ALA186 GLY187 PRO188 LEU189 SER190 SER191 VAL192 SER193 ALA194 ARG195 LEU196 ARG197 LEU198 ALA199 GLY200 TRP201 HIS202 LYS203 TYR204 LEU205 THR206 ARG207 ASN208 GLN209 ILE210 GLN211 PRO212 ILE213 ALA214 GLU215 ARG216 GLU217 GLY218 ASP219 TRP220 SER221 ALA222 MET223 SER224 GLY225 PHE226 GLN227 GLN228 THR229 MET230 GLN231 MET232 LEU233 ASN234 GLU235 GLY236 ILE237 VAL238 PRO239 THR240 ALA241 MET242 LEU243 VAL244 ALA245 ASN246 ASP247 GLN248 MET249 ALA250 LEU251 GLY252 ALA253 MET254 ARG255 ALA256 ILE257 THR258 GLU259 SER260 GLY261 LEU262 ARG263 VAL264 GLY265 ALA266 ASP267 ILE268 SER269 VAL270 VAL271 GLY272 TYR273 ASP274 ASP275 THR276 GLU277 ASP278 SER279 SER280 CYS281 TYR282 ILE283 PRO284 PRO285 LEU286 THR287 THR288 ILE289 LYS290 GLN291 ASP292 PHE293 ARG294 LEU295 LEU296 GLY297 GLN298 THR299 SER300 VAL301 ASP302 ARG303 LEU304 LEU305 GLN306 LEU307 SER308 GLN309 GLY310 GLN311 ALA312 VAL313 LYS314 GLY315 ASN316 GLN317 LEU318 LEU319 PRO320 VAL321 SER322 LEU323 VAL324 LYS325 ARG326 LYS327 THR328 THR329 LEU330 ALA331 PRO332 ASN333 THR334 GLN335 THR336 ALA337 SER338 PRO339 ARG340 ALA341 LEU342 ALA343 ASP344 SER345 LEU346 MET347 GLN348 LEU349 ALA350 ARG351 GLN352 VAL353 SER354 ARG355 LEU356 GLU357
Unit 4 MET1 LYS2 PRO3 VAL4 THR5 LEU6 TYR7 ASP8 VAL9 ALA10 GLU11 TYR12 ALA13 GLY14 VAL15 SER16 TYR17 GLN18 THR19 VAL20 SER21 ARG22 VAL23 VAL24 ASN25 GLN26 ALA27 SER28 HIS29 VAL30 SER31 ALA32 LYS33 THR34 ARG35 GLU36 LYS37 VAL38 GLU39 ALA40 ALA41 MET42 ALA43 GLU44 LEU45 ASN46 TYR47 ILE48 PRO49 ASN50 ARG51 VAL52 ALA53 GLN54 GLN55 LEU56 ALA57 GLY58 LYS59 GLN60 SER61 LEU62 LEU63 ILE64 GLY65 VAL66 ALA67 THR68 SER69 SER70 LEU71 ALA72 LEU73 HIS74 ALA75 PRO76 SER77 GLN78 ILE79 VAL80 ALA81 ALA82 ILE83 LYS84 SER85 ARG86 ALA87 ASP88 GLN89 LEU90 GLY91 ALA92 SER93 VAL94 VAL95 VAL96 SER97 MET98 VAL99 GLU100 ARG101 SER102 GLY103 VAL104 GLU105 ALA106 CYS107 LYS108 THR109 ALA110 VAL111 HIS112 ASN113 LEU114 LEU115 ALA116 GLN117 ARG118 VAL119 SER120 GLY121 LEU122 ILE123 ILE124 ASN125 TYR126 PRO127 LEU128 ASP129 ASP130 GLN131 ASP132 ALA133 ILE134 ALA135 VAL136 GLU137 ALA138 ALA139 CYS140 THR141 ASN142 VAL143 PRO144 ALA145 LEU146 PHE147 LEU148 ASP149 VAL150 SER151 ASP152 GLN153 THR154 PRO155 ILE156 ASN157 SER158 ILE159 ILE160 PHE161 SER162 HIS163 GLU164 ASP165 GLY166 THR167 ARG168 LEU169 GLY170 VAL171 GLU172 HIS173 LEU174 VAL175 ALA176 LEU177 GLY178 HIS179 GLN180 GLN181 ILE182 ALA183 LEU184 LEU185 ALA186 GLY187 PRO188 LEU189 SER190 SER191 VAL192 SER193 ALA194 ARG195 LEU196 ARG197 LEU198 ALA199 GLY200 TRP201 HIS202 LYS203 TYR204 LEU205 THR206 ARG207 ASN208 GLN209 ILE210 GLN211 PRO212 ILE213 ALA214 GLU215 ARG216 GLU217 GLY218 ASP219 TRP220 SER221 ALA222 MET223 SER224 GLY225 PHE226 GLN227 GLN228 THR229 MET230 GLN231 MET232 LEU233 ASN234 GLU235 GLY236 ILE237 VAL238 PRO239 THR240 ALA241 MET242 LEU243 VAL244 ALA245 ASN246 ASP247 GLN248 MET249 ALA250 LEU251 GLY252 ALA253 MET254 ARG255 ALA256 ILE257 THR258 GLU259 SER260 GLY261 LEU262 ARG263 VAL264 GLY265 ALA266 ASP267 ILE268 SER269 VAL270 VAL271 GLY272 TYR273 ASP274 ASP275 THR276 GLU277 ASP278 SER279 SER280 CYS281 TYR282 ILE283 PRO284 PRO285 LEU286 THR287 THR288 ILE289 LYS290 GLN291 ASP292 PHE293 ARG294 LEU295 LEU296 GLY297 GLN298 THR299 SER300 VAL301 ASP302 ARG303 LEU304 LEU305 GLN306 LEU307 SER308 GLN309 GLY310 GLN311 ALA312 VAL313 LYS314 GLY315 ASN316 GLN317 LEU318 LEU319 PRO320 VAL321 SER322 LEU323 VAL324 LYS325 ARG326 LYS327 THR328 THR329 LEU330 ALA331 PRO332 ASN333 THR334 GLN335 THR336 ALA337 SER338 PRO339 ARG340 ALA341 LEU342 ALA343 ASP344 SER345 LEU346 MET347 GLN348 LEU349 ALA350 ARG351 GLN352 VAL353 SER354 ARG355 LEU356 GLU357
Nucleic acids
Unit 5 T4 T5 G6 T7 G8 A9 G10 C11 G12 C13 T14 C15 A16 C17 A18 A19
Unit 6 T4 T5 G6 T7 G8 A9 G10 C11 G12 C13 T14 C15 A16 C17 A18 A19
Unit 7 T4 T5 G6 T7 G8 A9 G10 C11 G12 C13 T14 C15 A16 C17 A18 A19
Unit 8 T4 T5 G6 T7 G8 A9 G10 C11 G12 C13 T14 C15 A16 C17 A18 A19
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany