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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF RNASE III MUTANT E110K FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE-STRANDED RNA AT 2.9- ANGSTROM RESOLUTION
Keywords RIBONUCLEASE III, DOUBLE-STRANDED RNA, RNA INTERFERENCE, ENDONUCLEOLYTIC CLEAVAGE, HYDROLASE/RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1YYO     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    C 12 253 0
2  RNA    D 12 253 0
3  RNA    E 12 253 0
4  RNA    F 12 253 0
5  Protein   RIBONUCLEASE III  A 220 1837 0
6  Protein   RIBONUCLEASE III  B 219 1829 0
7  Ligand   5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*G)-3'  E 1 0 8
8 Water     35 0 35
total       523 4678 43

Proteins
Unit 5 MET1 LYS2 MET3 LEU4 GLU5 GLN6 LEU7 GLU8 LYS9 LYS10 LEU11 GLY12 TYR13 THR14 PHE15 LYS16 ASP17 LYS18 SER19 LEU20 LEU21 GLU22 LYS23 ALA24 LEU25 THR26 HIS27 VAL28 SER29 TYR30 SER31 LYS32 LYS33 GLU34 HIS35 TYR36 GLU37 THR38 LEU39 GLU40 PHE41 LEU42 GLY43 ASP44 ALA45 LEU46 VAL47 ASN48 PHE49 PHE50 ILE51 VAL52 ASP53 LEU54 LEU55 VAL56 GLN57 TYR58 SER59 PRO60 ASN61 LYS62 ARG63 GLU64 GLY65 PHE66 LEU67 SER68 PRO69 LEU70 LYS71 ALA72 TYR73 LEU74 ILE75 SER76 GLU77 GLU78 PHE79 PHE80 ASN81 LEU82 LEU83 ALA84 GLN85 LYS86 LEU87 GLU88 LEU89 HIS90 LYS91 PHE92 ILE93 ARG94 ILE95 LYS96 ARG97 GLY98 LYS99 ILE100 ASN101 GLU102 THR103 ILE104 ILE105 GLY106 ASP107 VAL108 PHE109 LYS110 ALA111 LEU112 TRP113 ALA114 ALA115 VAL116 TYR117 ILE118 ASP119 SER120 GLY121 ARG122 ASP123 ALA124 ASN125 PHE126 THR127 ARG128 GLU129 LEU130 PHE131 TYR132 LYS133 LEU134 PHE135 LYS136 GLU137 ASP138 ILE139 LEU140 SER141 ALA142 ILE143 LYS144 GLU145 GLY146 ARG147 VAL148 LYS149 LYS150 ASP151 TYR152 LYS153 THR154 ILE155 LEU156 GLN157 GLU158 ILE159 THR160 GLN161 LYS162 ARG163 TRP164 LYS165 GLU166 ARG167 PRO168 GLU169 TYR170 ARG171 LEU172 ILE173 SER174 VAL175 GLU176 GLY177 PRO178 HIS179 HIS180 LYS181 LYS182 LYS183 PHE184 ILE185 VAL186 GLU187 ALA188 LYS189 ILE190 LYS191 GLU192 TYR193 ARG194 THR195 LEU196 GLY197 GLU198 GLY199 LYS200 SER201 LYS202 LYS203 GLU204 ALA205 GLU206 GLN207 ARG208 ALA209 ALA210 GLU211 GLU212 LEU213 ILE214 LYS215 LEU216 LEU217 GLU218 GLU219 SER220
Unit 6 LYS2 MET3 LEU4 GLU5 GLN6 LEU7 GLU8 LYS9 LYS10 LEU11 GLY12 TYR13 THR14 PHE15 LYS16 ASP17 LYS18 SER19 LEU20 LEU21 GLU22 LYS23 ALA24 LEU25 THR26 HIS27 VAL28 SER29 TYR30 SER31 LYS32 LYS33 GLU34 HIS35 TYR36 GLU37 THR38 LEU39 GLU40 PHE41 LEU42 GLY43 ASP44 ALA45 LEU46 VAL47 ASN48 PHE49 PHE50 ILE51 VAL52 ASP53 LEU54 LEU55 VAL56 GLN57 TYR58 SER59 PRO60 ASN61 LYS62 ARG63 GLU64 GLY65 PHE66 LEU67 SER68 PRO69 LEU70 LYS71 ALA72 TYR73 LEU74 ILE75 SER76 GLU77 GLU78 PHE79 PHE80 ASN81 LEU82 LEU83 ALA84 GLN85 LYS86 LEU87 GLU88 LEU89 HIS90 LYS91 PHE92 ILE93 ARG94 ILE95 LYS96 ARG97 GLY98 LYS99 ILE100 ASN101 GLU102 THR103 ILE104 ILE105 GLY106 ASP107 VAL108 PHE109 LYS110 ALA111 LEU112 TRP113 ALA114 ALA115 VAL116 TYR117 ILE118 ASP119 SER120 GLY121 ARG122 ASP123 ALA124 ASN125 PHE126 THR127 ARG128 GLU129 LEU130 PHE131 TYR132 LYS133 LEU134 PHE135 LYS136 GLU137 ASP138 ILE139 LEU140 SER141 ALA142 ILE143 LYS144 GLU145 GLY146 ARG147 VAL148 LYS149 LYS150 ASP151 TYR152 LYS153 THR154 ILE155 LEU156 GLN157 GLU158 ILE159 THR160 GLN161 LYS162 ARG163 TRP164 LYS165 GLU166 ARG167 PRO168 GLU169 TYR170 ARG171 LEU172 ILE173 SER174 VAL175 GLU176 GLY177 PRO178 HIS179 HIS180 LYS181 LYS182 LYS183 PHE184 ILE185 VAL186 GLU187 ALA188 LYS189 ILE190 LYS191 GLU192 TYR193 ARG194 THR195 LEU196 GLY197 GLU198 GLY199 LYS200 SER201 LYS202 LYS203 GLU204 ALA205 GLU206 GLN207 ARG208 ALA209 ALA210 GLU211 GLU212 LEU213 ILE214 LYS215 LEU216 LEU217 GLU218 GLU219 SER220

Nucleic acids
Unit 1 C1 G2 C3 G4 A5 A6 U7 U8 C9 G10 C11 G12
Unit 2 C13 G14 C15 G16 A17 A18 U19 U20 C21 G22 C23 G24
Unit 3 C1 G2 C3 G4 A5 A6 U7 U8 C9 G10 C11 G12
Unit 4 C13 G14 C15 G16 A17 A18 U19 U20 C21 G22 C23 G24

Ligands
Unit 7 TRS201

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany