Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE EPIDERMAL GROWT RECEPTOR IN COMPLEX WITH THE FAB FRAGMENT OF CETUXIMAB/ERBI C225
Keywords CELL SURFACE RECEPTOR; TYROSINE KINASE; GLYCOPROTEIN; ANTIGEN:ANTIBODY COMPLEX; FAB FRAGMENT; ANTITUMOR; DRUG, IM SYSTEM-TRANSFERASE COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1YY9     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   EPIDERMAL GROWTH FACTOR RECEPTOR  A 613 4653 0
2  Protein   CETUXIMAB FAB LIGHT CHAIN  C 211 1609 0
3  Protein   CETUXIMAB FAB HEAVY CHAIN  D 220 1648 0
4  Ligand    B 9 0 105
5  Ligand    E 2 0 28
6  Ligand    F 2 0 28
7  Ligand    G 2 0 28
8  Ligand   EPIDERMAL GROWTH FACTOR RECEPTOR  A 4 0 56
9  Ligand   CETUXIMAB FAB HEAVY CHAIN  D 1 0 14
10 Water     56 0 56
total       1120 7910 315

Proteins
Unit 1 GLU2 GLU3 LYS4 LYS5 VAL6 CYS7 GLN8 GLY9 THR10 SER11 ASN12 LYS13 LEU14 THR15 GLN16 LEU17 GLY18 THR19 PHE20 GLU21 ASP22 HIS23 PHE24 LEU25 SER26 LEU27 GLN28 ARG29 MET30 PHE31 ASN32 ASN33 CYS34 GLU35 VAL36 VAL37 LEU38 GLY39 ASN40 LEU41 GLU42 ILE43 THR44 TYR45 VAL46 GLN47 ARG48 ASN49 TYR50 ASP51 LEU52 SER53 PHE54 LEU55 LYS56 THR57 ILE58 GLN59 GLU60 VAL61 ALA62 GLY63 TYR64 VAL65 LEU66 ILE67 ALA68 LEU69 ASN70 THR71 VAL72 GLU73 ARG74 ILE75 PRO76 LEU77 GLU78 ASN79 LEU80 GLN81 ILE82 ILE83 ARG84 GLY85 ASN86 MET87 TYR88 TYR89 GLU90 ASN91 SER92 TYR93 ALA94 LEU95 ALA96 VAL97 LEU98 SER99 ASN100 TYR101 ASP102 ALA103 ASN104 LYS105 THR106 GLY107 LEU108 LYS109 GLU110 LEU111 PRO112 MET113 ARG114 ASN115 LEU116 GLN117 GLU118 ILE119 LEU120 HIS121 GLY122 ALA123 VAL124 ARG125 PHE126 SER127 ASN128 ASN129 PRO130 ALA131 LEU132 CYS133 ASN134 VAL135 GLU136 SER137 ILE138 GLN139 TRP140 ARG141 ASP142 ILE143 VAL144 SER145 SER146 ASP147 PHE148 LEU149 SER150 ASN151 MET152 SER153 MET154 ASP155 PHE156 GLN157 ASN158 HIS159 LEU160 GLY161 SER162 CYS163 GLN164 LYS165 CYS166 ASP167 PRO168 SER169 CYS170 PRO171 ASN172 GLY173 SER174 CYS175 TRP176 GLY177 ALA178 GLY179 GLU180 GLU181 ASN182 CYS183 GLN184 LYS185 LEU186 THR187 LYS188 ILE189 ILE190 CYS191 ALA192 GLN193 GLN194 CYS195 SER196 GLY197 ARG198 CYS199 ARG200 GLY201 LYS202 SER203 PRO204 SER205 ASP206 CYS207 CYS208 HIS209 ASN210 GLN211 CYS212 ALA213 ALA214 GLY215 CYS216 THR217 GLY218 PRO219 ARG220 GLU221 SER222 ASP223 CYS224 LEU225 VAL226 CYS227 ARG228 LYS229 PHE230 ARG231 ASP232 GLU233 ALA234 THR235 CYS236 LYS237 ASP238 THR239 CYS240 PRO241 PRO242 LEU243 MET244 LEU245 TYR246 ASN247 PRO248 THR249 THR250 TYR251 GLN252 MET253 ASP254 VAL255 ASN256 PRO257 GLU258 GLY259 LYS260 TYR261 SER262 PHE263 GLY264 ALA265 THR266 CYS267 VAL268 LYS269 LYS270 CYS271 PRO272 ARG273 ASN274 TYR275 VAL276 VAL277 THR278 ASP279 HIS280 GLY281 SER282 CYS283 VAL284 ARG285 ALA286 CYS287 GLY288 ALA289 ASP290 SER291 TYR292 GLU293 MET294 GLU295 GLU296 ASP297 GLY298 VAL299 ARG300 LYS301 CYS302 LYS303 LYS304 CYS305 GLU306 GLY307 PRO308 CYS309 ARG310 LYS311 VAL312 CYS313 ASN314 GLY315 ILE316 GLY317 ILE318 GLY319 GLU320 PHE321 LYS322 ASP323 SER324 LEU325 SER326 ILE327 ASN328 ALA329 THR330 ASN331 ILE332 LYS333 HIS334 PHE335 LYS336 ASN337 CYS338 THR339 SER340 ILE341 SER342 GLY343 ASP344 LEU345 HIS346 ILE347 LEU348 PRO349 VAL350 ALA351 PHE352 ARG353 GLY354 ASP355 SER356 PHE357 THR358 HIS359 THR360 PRO361 PRO362 LEU363 ASP364 PRO365 GLN366 GLU367 LEU368 ASP369 ILE370 LEU371 LYS372 THR373 VAL374 LYS375 GLU376 ILE377 THR378 GLY379 PHE380 LEU381 LEU382 ILE383 GLN384 ALA385 TRP386 PRO387 GLU388 ASN389 ARG390 THR391 ASP392 LEU393 HIS394 ALA395 PHE396 GLU397 ASN398 LEU399 GLU400 ILE401 ILE402 ARG403 GLY404 ARG405 THR406 LYS407 GLN408 HIS409 GLY410 GLN411 PHE412 SER413 LEU414 ALA415 VAL416 VAL417 SER418 LEU419 ASN420 ILE421 THR422 SER423 LEU424 GLY425 LEU426 ARG427 SER428 LEU429 LYS430 GLU431 ILE432 SER433 ASP434 GLY435 ASP436 VAL437 ILE438 ILE439 SER440 GLY441 ASN442 LYS443 ASN444 LEU445 CYS446 TYR447 ALA448 ASN449 THR450 ILE451 ASN452 TRP453 LYS454 LYS455 LEU456 PHE457 GLY458 THR459 SER460 GLY461 GLN462 LYS463 THR464 LYS465 ILE466 ILE467 SER468 ASN469 ARG470 GLY471 GLU472 ASN473 LYS474 CYS475 LYS476 ALA477 THR478 GLY479 GLN480 VAL481 CYS482 HIS483 ALA484 LEU485 CYS486 SER487 PRO488 GLU489 GLY490 CYS491 TRP492 GLY493 PRO494 GLU495 PRO496 ARG497 ASP498 CYS499 VAL500 SER501 CYS502 ARG503 ASN504 VAL505 SER506 ARG507 GLY508 ARG509 GLU510 CYS511 VAL512 ASP513 LYS514 CYS515 LYS516 LEU517 LEU518 GLU519 GLY520 GLU521 PRO522 ARG523 GLU524 PHE525 VAL526 GLU527 ASN528 SER529 GLU530 CYS531 ILE532 GLN533 CYS534 HIS535 PRO536 GLU537 CYS538 LEU539 PRO540 GLN541 ALA542 MET543 ASN544 ILE545 THR546 CYS547 THR548 GLY549 ARG550 GLY551 PRO552 ASP553 ASN554 CYS555 ILE556 GLN557 CYS558 ALA559 HIS560 TYR561 ILE562 ASP563 GLY564 PRO565 HIS566 CYS567 VAL568 LYS569 THR570 CYS571 PRO572 ALA573 GLY574 VAL575 MET576 GLY577 GLU578 ASN579 ASN580 THR581 LEU582 VAL583 TRP584 LYS585 TYR586 ALA587 ASP588 ALA589 GLY590 HIS591 VAL592 CYS593 HIS594 LEU595 CYS596 HIS597 PRO598 ASN599 CYS600 THR601 TYR602 GLY603 CYS604 THR605 GLY606 PRO607 GLY608 LEU609 ARG610 GLY611 CYS612 PRO613 THR614
Unit 2 ASP1 ILE2 LEU3 LEU4 THR5 GLN6 SER7 PRO8 VAL9 ILE10 LEU11 SER12 VAL13 SER14 PRO15 GLY16 GLU17 ARG18 VAL19 SER20 PHE21 SER22 CYS23 ARG24 ALA25 SER26 GLN27 SER28 ILE29 GLY30 THR31 ASN32 ILE33 HIS34 TRP35 TYR36 GLN37 GLN38 ARG39 THR40 ASN41 GLY42 SER43 PRO44 ARG45 LEU46 LEU47 ILE48 LYS49 TYR50 ALA51 SER52 GLU53 SER54 ILE55 SER56 GLY57 ILE58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 SER74 ILE75 ASN76 SER77 VAL78 GLU79 SER80 GLU81 ASP82 ILE83 ALA84 ASP85 TYR86 TYR87 CYS88 GLN89 GLN90 ASN91 ASN92 ASN93 TRP94 PRO95 THR96 THR97 PHE98 GLY99 ALA100 GLY101 THR102 LYS103 LEU104 GLU105 LEU106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211
Unit 3 GLN1 VAL2 GLN3 LEU4 LYS5 GLN6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 GLN13 PRO14 SER15 GLN16 SER17 LEU18 SER19 ILE20 THR21 CYS22 THR23 VAL24 SER25 GLY26 PHE27 SER28 LEU29 THR30 ASN31 TYR32 GLY33 VAL34 HIS35 TRP36 VAL37 ARG38 GLN39 SER40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 LEU48 GLY49 VAL50 ILE51 TRP52 SER53 GLY54 GLY55 ASN56 THR57 ASP58 TYR59 ASN60 THR61 PRO62 PHE63 THR64 SER65 ARG66 LEU67 SER68 ILE69 ASN70 LYS71 ASP72 ASN73 SER74 LYS75 SER76 GLN77 VAL78 PHE79 PHE80 LYS81 MET82 ASN83 SER84 LEU85 GLN86 SER87 ASN88 ASP89 THR90 ALA91 ILE92 TYR93 TYR94 CYS95 ALA96 ARG97 ALA98 LEU99 THR100 TYR101 TYR102 ASP103 TYR104 GLU105 PHE106 ALA107 TYR108 TRP109 GLY110 GLN111 GLY112 THR113 LEU114 VAL115 THR116 VAL117 SER118 ALA119 ALA120 SER121 THR122 LYS123 GLY124 PRO125 SER126 VAL127 PHE128 PRO129 LEU130 ALA131 PRO132 SER133 SER134 LYS135 SER136 THR137 SER138 GLY139 GLY140 THR141 ALA142 ALA143 LEU144 GLY145 CYS146 LEU147 VAL148 LYS149 ASP150 TYR151 PHE152 PRO153 GLU154 PRO155 VAL156 THR157 VAL158 SER159 TRP160 ASN161 SER162 GLY163 ALA164 LEU165 THR166 SER167 GLY168 VAL169 HIS170 THR171 PHE172 PRO173 ALA174 VAL175 LEU176 GLN177 SER178 SER179 GLY180 LEU181 TYR182 SER183 LEU184 SER185 SER186 VAL187 VAL188 THR189 VAL190 PRO191 SER192 SER193 SER194 LEU195 GLY196 THR197 GLN198 THR199 TYR200 ILE201 CYS202 ASN203 VAL204 ASN205 HIS206 LYS207 PRO208 SER209 ASN210 THR211 LYS212 VAL213 ASP214 LYS215 ARG216 VAL217 GLU218 PRO219 LYS220

Ligands
Unit 4 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 MAN8 MAN9
Unit 5 NAG1 NAG2
Unit 6 NAG1 NAG2
Unit 7 NAG1 NAG2
Unit 8 NAG625 NAG3891 NAG5041 NAG5441
Unit 9 NAG881

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany