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Sequence, Chains, Asymmetric and Biological Units

Title RO AUTOANTIGEN COMPLEXED WITH RNAS
Keywords HEAT REPEAT; VON WILLEBRAND FACTOR A; ROSSMANN FOLD; MIDAS M DUPLEX; SSRNA, RNA BINDING PROTEIN-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1YVP     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    C 10 191 21
2  RNA    D 10 150 60
3  RNA    E 10 191 21
4  RNA    F 10 150 60
5  RNA    G 5 102 0
6  RNA    H 7 148 0
7  Protein   60-KDA SS-A/RO RIBONUCLEOPROTEIN  A 529 4177 0
8  Protein   60-KDA SS-A/RO RIBONUCLEOPROTEIN  B 532 4201 0
9  Ligand   60-KDA SS-A/RO RIBONUCLEOPROTEIN  A 2 0 5
10  Ligand   60-KDA SS-A/RO RIBONUCLEOPROTEIN  B 2 0 5
11 Water     408 0 408
total       1525 9310 580
Proteins
Unit 7 MET5 ASP6 GLN7 THR8 GLN9 PRO10 LEU11 ASN12 GLU13 LYS14 GLN15 VAL16 PRO17 ASN18 SER19 GLU20 GLY21 CYS22 TYR23 VAL24 TRP25 GLN26 VAL27 SER28 ASP29 MET30 ASN31 ARG32 LEU33 ARG34 ARG35 PHE36 LEU37 CYS38 PHE39 GLY40 SER41 GLU42 GLY43 GLY44 THR45 TYR46 TYR47 ILE48 GLU49 GLU50 LYS51 LYS52 LEU53 GLY54 GLN55 GLU56 ASN57 ALA58 GLU59 ALA60 LEU61 LEU62 ARG63 LEU64 ILE65 GLU66 ASP67 GLY68 LYS69 GLY70 CYS71 GLU72 VAL73 VAL74 GLN75 GLU76 ILE77 LYS78 THR79 PHE80 SER81 GLN82 GLU83 GLY84 ARG85 ALA86 ALA87 LYS88 GLN89 GLU90 PRO91 THR92 LEU93 PHE94 ALA95 LEU96 ALA97 VAL98 CYS99 SER100 GLN101 CYS102 SER103 ASP104 ILE105 LYS106 THR107 LYS108 GLN109 ALA110 ALA111 PHE112 ARG113 ALA114 VAL115 PRO116 GLU117 VAL118 CYS119 ARG120 ILE121 PRO122 THR123 HIS124 LEU125 PHE126 THR127 PHE128 ILE129 GLN130 PHE131 LYS132 LYS133 ASP134 LEU135 LYS136 GLU137 GLY138 MET139 LYS140 CYS141 GLY142 MET143 TRP144 GLY145 ARG146 ALA147 LEU148 ARG149 LYS150 ALA151 VAL152 SER153 ASP154 TRP155 TYR156 ASN157 THR158 LYS159 ASP160 ALA161 LEU162 ASN163 LEU164 ALA165 MET166 ALA167 VAL168 THR169 LYS170 TYR171 LYS172 GLN173 ARG174 ASN175 GLY176 TRP177 SER178 HIS179 LYS180 ASP181 LEU182 LEU183 ARG184 LEU185 SER186 HIS187 ILE188 LYS189 PRO190 ALA191 ASN192 GLU193 GLY194 LEU195 THR196 MET197 VAL198 ALA199 LYS200 TYR201 VAL202 SER203 LYS204 GLY205 TRP206 LYS207 GLU208 VAL209 GLN210 GLU211 ALA212 TYR213 LYS214 GLU215 LYS216 GLU217 LEU218 SER219 PRO220 GLU221 THR222 GLU223 LYS224 VAL225 LEU226 LYS227 TYR228 LEU229 GLU230 ALA231 THR232 GLU233 ARG234 VAL235 LYS236 ARG237 THR238 LYS239 ASP240 GLU241 LEU242 GLU243 ILE244 ILE245 HIS246 LEU247 ILE248 ASP249 GLU250 TYR251 ARG252 LEU253 VAL254 ARG255 GLU256 HIS257 LEU258 LEU259 THR260 ILE261 HIS262 LEU263 LYS264 SER265 LYS266 GLU267 ILE268 TRP269 LYS270 SER271 LEU272 LEU273 GLN274 ASP275 MET276 PRO277 LEU278 THR279 ALA280 LEU281 LEU282 ARG283 ASN284 LEU285 GLY286 LYS287 MET288 THR289 ALA290 ASP291 SER292 VAL293 LEU294 ALA295 PRO296 ALA297 SER298 SER299 GLU300 VAL301 SER302 SER303 VAL304 CYS305 GLU306 ARG307 LEU308 THR309 ASN310 GLU311 LYS312 LEU313 LEU314 LYS315 LYS316 ALA317 ARG318 ILE319 HIS320 PRO321 PHE322 HIS323 ILE324 LEU325 VAL326 ALA327 LEU328 GLU329 THR330 TYR331 LYS332 LYS333 GLY334 HIS335 GLY336 LEU341 ARG342 TRP343 ILE344 PRO345 ASP346 THR347 SER348 ILE349 VAL350 GLU351 ALA352 LEU353 ASP354 ASN355 ALA356 PHE357 TYR358 LYS359 SER360 PHE361 LYS362 LEU363 VAL364 GLU365 PRO366 THR367 GLY368 LYS369 ARG370 PHE371 LEU372 LEU373 ALA374 ILE375 ASP376 VAL377 SER378 ALA379 SER380 MET381 ASN382 GLN383 ARG384 VAL385 LEU386 GLY387 SER388 ILE389 LEU390 ASN391 ALA392 SER393 VAL394 VAL395 ALA396 ALA397 ALA398 MET399 CYS400 MET401 LEU402 VAL403 ALA404 ARG405 THR406 GLU407 LYS408 ASP409 SER410 HIS411 MET412 VAL413 ALA414 PHE415 SER416 ASP417 GLU418 MET419 LEU420 PRO421 CYS422 PRO423 ILE424 THR425 VAL426 ASN427 MET428 LEU429 LEU430 HIS431 GLU432 VAL433 VAL434 GLU435 LYS436 MET437 SER438 ASP439 ILE440 THR441 MET442 GLY443 SER444 THR445 ASP446 CYS447 ALA448 LEU449 PRO450 MET451 LEU452 TRP453 ALA454 GLN455 LYS456 THR457 ASN458 THR459 ALA460 ALA461 ASP462 ILE463 PHE464 ILE465 VAL466 PHE467 THR468 ASP469 CYS470 GLU471 THR472 ASN473 VAL474 GLU475 ASP476 VAL477 HIS478 PRO479 ALA480 THR481 ALA482 LEU483 LYS484 GLN485 TYR486 ARG487 GLU488 LYS489 MET490 GLY491 ILE492 PRO493 ALA494 LYS495 LEU496 ILE497 VAL498 CYS499 ALA500 MET501 THR502 SER503 ASN504 GLY505 PHE506 SER507 ILE508 ALA509 ASP510 PRO511 ASP512 ASP513 ARG514 GLY515 MET516 LEU517 ASP518 ILE519 CYS520 GLY521 PHE522 ASP523 SER524 GLY525 ALA526 LEU527 ASP528 VAL529 ILE530 ARG531 ASN532 PHE533 THR534 LEU535 ASP536 LEU537
Unit 8 THR4 MET5 ASP6 GLN7 THR8 GLN9 PRO10 LEU11 ASN12 GLU13 LYS14 GLN15 VAL16 PRO17 ASN18 SER19 GLU20 GLY21 CYS22 TYR23 VAL24 TRP25 GLN26 VAL27 SER28 ASP29 MET30 ASN31 ARG32 LEU33 ARG34 ARG35 PHE36 LEU37 CYS38 PHE39 GLY40 SER41 GLU42 GLY43 GLY44 THR45 TYR46 TYR47 ILE48 GLU49 GLU50 LYS51 LYS52 LEU53 GLY54 GLN55 GLU56 ASN57 ALA58 GLU59 ALA60 LEU61 LEU62 ARG63 LEU64 ILE65 GLU66 ASP67 GLY68 LYS69 GLY70 CYS71 GLU72 VAL73 VAL74 GLN75 GLU76 ILE77 LYS78 THR79 PHE80 SER81 GLN82 GLU83 GLY84 ARG85 ALA86 ALA87 LYS88 GLN89 GLU90 PRO91 THR92 LEU93 PHE94 ALA95 LEU96 ALA97 VAL98 CYS99 SER100 GLN101 CYS102 SER103 ASP104 ILE105 LYS106 THR107 LYS108 GLN109 ALA110 ALA111 PHE112 ARG113 ALA114 VAL115 PRO116 GLU117 VAL118 CYS119 ARG120 ILE121 PRO122 THR123 HIS124 LEU125 PHE126 THR127 PHE128 ILE129 GLN130 PHE131 LYS132 LYS133 ASP134 LEU135 LYS136 GLU137 GLY138 MET139 LYS140 CYS141 GLY142 MET143 TRP144 GLY145 ARG146 ALA147 LEU148 ARG149 LYS150 ALA151 VAL152 SER153 ASP154 TRP155 TYR156 ASN157 THR158 LYS159 ASP160 ALA161 LEU162 ASN163 LEU164 ALA165 MET166 ALA167 VAL168 THR169 LYS170 TYR171 LYS172 GLN173 ARG174 ASN175 GLY176 TRP177 SER178 HIS179 LYS180 ASP181 LEU182 LEU183 ARG184 LEU185 SER186 HIS187 ILE188 LYS189 PRO190 ALA191 ASN192 GLU193 GLY194 LEU195 THR196 MET197 VAL198 ALA199 LYS200 TYR201 VAL202 SER203 LYS204 GLY205 TRP206 LYS207 GLU208 VAL209 GLN210 GLU211 ALA212 TYR213 LYS214 GLU215 LYS216 GLU217 LEU218 SER219 PRO220 GLU221 THR222 GLU223 LYS224 VAL225 LEU226 LYS227 TYR228 LEU229 GLU230 ALA231 THR232 GLU233 ARG234 VAL235 LYS236 ARG237 THR238 LYS239 ASP240 GLU241 LEU242 GLU243 ILE244 ILE245 HIS246 LEU247 ILE248 ASP249 GLU250 TYR251 ARG252 LEU253 VAL254 ARG255 GLU256 HIS257 LEU258 LEU259 THR260 ILE261 HIS262 LEU263 LYS264 SER265 LYS266 GLU267 ILE268 TRP269 LYS270 SER271 LEU272 LEU273 GLN274 ASP275 MET276 PRO277 LEU278 THR279 ALA280 LEU281 LEU282 ARG283 ASN284 LEU285 GLY286 LYS287 MET288 THR289 ALA290 ASP291 SER292 VAL293 LEU294 ALA295 PRO296 ALA297 SER298 SER299 GLU300 VAL301 SER302 SER303 VAL304 CYS305 GLU306 ARG307 LEU308 THR309 ASN310 GLU311 LYS312 LEU313 LEU314 LYS315 LYS316 ALA317 ARG318 ILE319 HIS320 PRO321 PHE322 HIS323 ILE324 LEU325 VAL326 ALA327 LEU328 GLU329 THR330 TYR331 LYS332 LYS333 GLY334 HIS335 GLY336 ASN337 LYS340 LEU341 ARG342 TRP343 ILE344 PRO345 ASP346 THR347 SER348 ILE349 VAL350 GLU351 ALA352 LEU353 ASP354 ASN355 ALA356 PHE357 TYR358 LYS359 SER360 PHE361 LYS362 LEU363 VAL364 GLU365 PRO366 THR367 GLY368 LYS369 ARG370 PHE371 LEU372 LEU373 ALA374 ILE375 ASP376 VAL377 SER378 ALA379 SER380 MET381 ASN382 GLN383 ARG384 VAL385 LEU386 GLY387 SER388 ILE389 LEU390 ASN391 ALA392 SER393 VAL394 VAL395 ALA396 ALA397 ALA398 MET399 CYS400 MET401 LEU402 VAL403 ALA404 ARG405 THR406 GLU407 LYS408 ASP409 SER410 HIS411 MET412 VAL413 ALA414 PHE415 SER416 ASP417 GLU418 MET419 LEU420 PRO421 CYS422 PRO423 ILE424 THR425 VAL426 ASN427 MET428 LEU429 LEU430 HIS431 GLU432 VAL433 VAL434 GLU435 LYS436 MET437 SER438 ASP439 ILE440 THR441 MET442 GLY443 SER444 THR445 ASP446 CYS447 ALA448 LEU449 PRO450 MET451 LEU452 TRP453 ALA454 GLN455 LYS456 THR457 ASN458 THR459 ALA460 ALA461 ASP462 ILE463 PHE464 ILE465 VAL466 PHE467 THR468 ASP469 CYS470 GLU471 THR472 ASN473 VAL474 GLU475 ASP476 VAL477 HIS478 PRO479 ALA480 THR481 ALA482 LEU483 LYS484 GLN485 TYR486 ARG487 GLU488 LYS489 MET490 GLY491 ILE492 PRO493 ALA494 LYS495 LEU496 ILE497 VAL498 CYS499 ALA500 MET501 THR502 SER503 ASN504 GLY505 PHE506 SER507 ILE508 ALA509 ASP510 PRO511 ASP512 ASP513 ARG514 GLY515 MET516 LEU517 ASP518 ILE519 CYS520 GLY521 PHE522 ASP523 SER524 GLY525 ALA526 LEU527 ASP528 VAL529 ILE530 ARG531 ASN532 PHE533 THR534 LEU535 ASP536 LEU537
Nucleic acids
Unit 1 G1 C2 IU3 G4 G5 U6 C7 C8 G9 A10
Unit 2 IU1 IU2 G3 A4 C5 IU6 A7 G8 C9 C10
Unit 3 G1 C2 IU3 G4 G5 U6 C7 C8 G9 A10
Unit 4 IU1 IU2 G3 A4 C5 IU6 A7 G8 C9 C10
Unit 5 U6 C7 C8 G9 A10
Unit 6 G4 G5 U6 C7 C8 G9 A10
Ligands
Unit 9 MG1001 ACT2001
Unit 10 MG1002 ACT2002
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany