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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF PHOSPHOENOLPYRUVATE CARBOXYKINASE OF ANAEROBIOSPIRILLUM SUCCINICIPRODUCENS COMPLEXED WITH ATP, O MAGNESIUM AND MANGANESE IONS
Keywords KINASE; DOMAIN CLOSURE; NUCLEOTIDE BINDING; PARALLEL BETA SH HYDROGEN BOND, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1YTM     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PHOSPHOENOLPYRUVATE CARBOXYKINASE [ATP]  A 517 3992 0
2  Protein   PHOSPHOENOLPYRUVATE CARBOXYKINASE [ATP]  B 517 4008 0
3  Ligand   PHOSPHOENOLPYRUVATE CARBOXYKINASE [ATP]  A 4 0 39
4  Ligand   PHOSPHOENOLPYRUVATE CARBOXYKINASE [ATP]  B 4 0 39
5 Water     384 0 384
total       1426 8000 462
Proteins
Unit 1 SER2 LEU3 SER4 GLU5 SER6 LEU7 ALA8 LYS9 TYR10 GLY11 ILE12 THR13 GLY14 ALA15 THR16 ASN17 ILE18 VAL19 HIS20 ASN21 PRO22 SER23 HIS24 GLU25 GLU26 LEU27 PHE28 ALA29 ALA30 GLU31 THR32 GLN33 ALA34 SER35 LEU36 GLU37 GLY38 PHE39 GLU40 LYS41 GLY42 THR43 VAL44 THR45 GLU46 MET47 GLY48 ALA49 VAL50 ASN51 VAL52 MET53 THR54 GLY55 VAL56 TYR57 THR58 GLY59 ARG60 SER61 PRO62 LYS63 ASP64 LYS65 PHE66 ILE67 VAL68 LYS69 ASN70 GLU71 ALA72 SER73 LYS74 GLU75 ILE76 TRP77 TRP78 THR79 SER80 ASP81 GLU82 PHE83 LYS84 ASN85 ASP86 ASN87 LYS88 PRO89 VAL90 THR91 GLU92 GLU93 ALA94 TRP95 ALA96 GLN97 LEU98 LYS99 ALA100 LEU101 ALA102 GLY103 LYS104 GLU105 LEU106 SER107 ASN108 LYS109 PRO110 LEU111 TYR112 VAL113 VAL114 ASP115 LEU116 PHE117 CYS118 GLY119 ALA120 ASN121 GLU122 ASN123 THR124 ARG125 LEU126 LYS127 ILE128 ARG129 PHE130 VAL131 MET132 GLU133 VAL134 ALA135 TRP136 GLN137 ALA138 HIS139 PHE140 VAL141 THR142 ASN143 MET144 PHE145 ILE146 ARG147 PRO148 THR149 GLU150 GLU151 GLU152 LEU153 LYS154 GLY155 PHE156 GLU157 PRO158 ASP159 PHE160 VAL161 VAL162 LEU163 ASN164 ALA165 SER166 LYS167 ALA168 LYS169 VAL170 GLU171 ASN172 PHE173 LYS174 GLU175 LEU176 GLY177 LEU178 ASN179 SER180 GLU181 THR182 ALA183 VAL184 VAL185 PHE186 ASN187 LEU188 ALA189 GLU190 LYS191 MET192 GLN193 ILE194 ILE195 LEU196 ASN197 THR198 TRP199 TYR200 GLY201 GLY202 GLU203 MET204 LYS205 LYS206 GLY207 MET208 PHE209 SER210 MET211 MET212 ASN213 PHE214 TYR215 LEU216 PRO217 LEU218 GLN219 GLY220 ILE221 ALA222 ALA223 MET224 HIS225 CYS226 SER227 ALA228 ASN229 THR230 ASP231 LEU232 GLU233 GLY234 LYS235 ASN236 THR237 ALA238 ILE239 PHE240 PHE241 GLY242 LEU243 SER244 GLY245 THR246 GLY247 LYS248 THR249 THR250 LEU251 SER252 THR253 ASP254 PRO255 LYS256 ARG257 LEU258 LEU259 ILE260 GLY261 ASP262 ASP263 GLU264 HIS265 GLY266 TRP267 ASP268 ASP269 ASP270 GLY271 VAL272 PHE273 ASN274 PHE275 GLU276 GLY277 GLY278 CYS279 TYR280 ALA281 LYS282 VAL283 ILE284 ASN285 LEU286 SER287 LYS288 GLU289 ASN290 GLU291 PRO292 ASP293 ILE294 TRP295 GLY296 ALA297 ILE298 LYS299 ARG300 ASN301 ALA302 LEU303 LEU304 GLU305 ASN306 VAL307 THR308 VAL309 ASP310 ALA311 ASN312 GLY313 LYS314 VAL315 ASP316 PHE317 ALA318 ASP319 LYS320 SER321 VAL322 THR323 GLU324 ASN325 THR326 ARG327 VAL328 SER329 TYR330 PRO331 ILE332 PHE333 HIS334 ILE335 LYS336 ASN337 ILE338 VAL339 LYS340 PRO341 VAL342 SER343 LYS344 ALA345 PRO346 ALA347 ALA348 LYS349 ARG350 VAL351 ILE352 PHE353 LEU354 SER355 ALA356 ASP357 ALA358 PHE359 GLY360 VAL361 LEU362 PRO363 PRO364 VAL365 SER366 ILE367 LEU368 SER369 LYS370 GLU371 GLN372 THR373 LYS374 TYR375 TYR376 PHE377 LEU378 SER379 GLY380 PHE381 THR382 ALA383 LYS384 LEU385 ALA386 GLY387 THR388 GLU389 ARG390 GLY391 ILE392 THR393 GLU394 PRO395 THR396 PRO397 THR398 PHE399 SER400 SER401 CYS402 PHE403 GLY404 ALA405 ALA406 PHE407 LEU408 THR409 LEU410 PRO411 PRO412 THR413 LYS414 TYR415 ALA416 GLU417 VAL418 LEU419 VAL420 LYS421 ARG422 MET423 GLU424 ALA425 SER426 GLY427 ALA428 LYS429 ALA430 TYR431 LEU432 VAL433 ASN434 THR435 GLY436 TRP437 ASN438 GLY439 THR440 GLY441 LYS442 ARG443 ILE444 SER445 ILE446 LYS447 ASP448 THR449 ARG450 GLY451 ILE452 ILE453 ASP454 ALA455 ILE456 LEU457 ASP458 GLY459 SER460 ILE461 ASP462 THR463 ALA464 ASN465 THR466 ALA467 THR468 ILE469 PRO470 TYR471 PHE472 ASN473 PHE474 THR475 VAL476 PRO477 THR478 GLU479 LEU480 LYS481 GLY482 VAL483 ASP484 THR485 LYS486 ILE487 LEU488 ASP489 PRO490 ARG491 ASN492 THR493 TYR494 ALA495 ASP496 ALA497 SER498 GLU499 TRP500 GLU501 VAL502 LYS503 ALA504 LYS505 ASP506 LEU507 ALA508 GLU509 ARG510 PHE511 GLN512 LYS513 ASN514 PHE515 LYS516 LYS517 PHE518
Unit 2 SER1002 LEU1003 SER1004 GLU1005 SER1006 LEU1007 ALA1008 LYS1009 TYR1010 GLY1011 ILE1012 THR1013 GLY1014 ALA1015 THR1016 ASN1017 ILE1018 VAL1019 HIS1020 ASN1021 PRO1022 SER1023 HIS1024 GLU1025 GLU1026 LEU1027 PHE1028 ALA1029 ALA1030 GLU1031 THR1032 GLN1033 ALA1034 SER1035 LEU1036 GLU1037 GLY1038 PHE1039 GLU1040 LYS1041 GLY1042 THR1043 VAL1044 THR1045 GLU1046 MET1047 GLY1048 ALA1049 VAL1050 ASN1051 VAL1052 MET1053 THR1054 GLY1055 VAL1056 TYR1057 THR1058 GLY1059 ARG1060 SER1061 PRO1062 LYS1063 ASP1064 LYS1065 PHE1066 ILE1067 VAL1068 LYS1069 ASN1070 GLU1071 ALA1072 SER1073 LYS1074 GLU1075 ILE1076 TRP1077 TRP1078 THR1079 SER1080 ASP1081 GLU1082 PHE1083 LYS1084 ASN1085 ASP1086 ASN1087 LYS1088 PRO1089 VAL1090 THR1091 GLU1092 GLU1093 ALA1094 TRP1095 ALA1096 GLN1097 LEU1098 LYS1099 ALA1100 LEU1101 ALA1102 GLY1103 LYS1104 GLU1105 LEU1106 SER1107 ASN1108 LYS1109 PRO1110 LEU1111 TYR1112 VAL1113 VAL1114 ASP1115 LEU1116 PHE1117 CYS1118 GLY1119 ALA1120 ASN1121 GLU1122 ASN1123 THR1124 ARG1125 LEU1126 LYS1127 ILE1128 ARG1129 PHE1130 VAL1131 MET1132 GLU1133 VAL1134 ALA1135 TRP1136 GLN1137 ALA1138 HIS1139 PHE1140 VAL1141 THR1142 ASN1143 MET1144 PHE1145 ILE1146 ARG1147 PRO1148 THR1149 GLU1150 GLU1151 GLU1152 LEU1153 LYS1154 GLY1155 PHE1156 GLU1157 PRO1158 ASP1159 PHE1160 VAL1161 VAL1162 LEU1163 ASN1164 ALA1165 SER1166 LYS1167 ALA1168 LYS1169 VAL1170 GLU1171 ASN1172 PHE1173 LYS1174 GLU1175 LEU1176 GLY1177 LEU1178 ASN1179 SER1180 GLU1181 THR1182 ALA1183 VAL1184 VAL1185 PHE1186 ASN1187 LEU1188 ALA1189 GLU1190 LYS1191 MET1192 GLN1193 ILE1194 ILE1195 LEU1196 ASN1197 THR1198 TRP1199 TYR1200 GLY1201 GLY1202 GLU1203 MET1204 LYS1205 LYS1206 GLY1207 MET1208 PHE1209 SER1210 MET1211 MET1212 ASN1213 PHE1214 TYR1215 LEU1216 PRO1217 LEU1218 GLN1219 GLY1220 ILE1221 ALA1222 ALA1223 MET1224 HIS1225 CYS1226 SER1227 ALA1228 ASN1229 THR1230 ASP1231 LEU1232 GLU1233 GLY1234 LYS1235 ASN1236 THR1237 ALA1238 ILE1239 PHE1240 PHE1241 GLY1242 LEU1243 SER1244 GLY1245 THR1246 GLY1247 LYS1248 THR1249 THR1250 LEU1251 SER1252 THR1253 ASP1254 PRO1255 LYS1256 ARG1257 LEU1258 LEU1259 ILE1260 GLY1261 ASP1262 ASP1263 GLU1264 HIS1265 GLY1266 TRP1267 ASP1268 ASP1269 ASP1270 GLY1271 VAL1272 PHE1273 ASN1274 PHE1275 GLU1276 GLY1277 GLY1278 CYS1279 TYR1280 ALA1281 LYS1282 VAL1283 ILE1284 ASN1285 LEU1286 SER1287 LYS1288 GLU1289 ASN1290 GLU1291 PRO1292 ASP1293 ILE1294 TRP1295 GLY1296 ALA1297 ILE1298 LYS1299 ARG1300 ASN1301 ALA1302 LEU1303 LEU1304 GLU1305 ASN1306 VAL1307 THR1308 VAL1309 ASP1310 ALA1311 ASN1312 GLY1313 LYS1314 VAL1315 ASP1316 PHE1317 ALA1318 ASP1319 LYS1320 SER1321 VAL1322 THR1323 GLU1324 ASN1325 THR1326 ARG1327 VAL1328 SER1329 TYR1330 PRO1331 ILE1332 PHE1333 HIS1334 ILE1335 LYS1336 ASN1337 ILE1338 VAL1339 LYS1340 PRO1341 VAL1342 SER1343 LYS1344 ALA1345 PRO1346 ALA1347 ALA1348 LYS1349 ARG1350 VAL1351 ILE1352 PHE1353 LEU1354 SER1355 ALA1356 ASP1357 ALA1358 PHE1359 GLY1360 VAL1361 LEU1362 PRO1363 PRO1364 VAL1365 SER1366 ILE1367 LEU1368 SER1369 LYS1370 GLU1371 GLN1372 THR1373 LYS1374 TYR1375 TYR1376 PHE1377 LEU1378 SER1379 GLY1380 PHE1381 THR1382 ALA1383 LYS1384 LEU1385 ALA1386 GLY1387 THR1388 GLU1389 ARG1390 GLY1391 ILE1392 THR1393 GLU1394 PRO1395 THR1396 PRO1397 THR1398 PHE1399 SER1400 SER1401 CYS1402 PHE1403 GLY1404 ALA1405 ALA1406 PHE1407 LEU1408 THR1409 LEU1410 PRO1411 PRO1412 THR1413 LYS1414 TYR1415 ALA1416 GLU1417 VAL1418 LEU1419 VAL1420 LYS1421 ARG1422 MET1423 GLU1424 ALA1425 SER1426 GLY1427 ALA1428 LYS1429 ALA1430 TYR1431 LEU1432 VAL1433 ASN1434 THR1435 GLY1436 TRP1437 ASN1438 GLY1439 THR1440 GLY1441 LYS1442 ARG1443 ILE1444 SER1445 ILE1446 LYS1447 ASP1448 THR1449 ARG1450 GLY1451 ILE1452 ILE1453 ASP1454 ALA1455 ILE1456 LEU1457 ASP1458 GLY1459 SER1460 ILE1461 ASP1462 THR1463 ALA1464 ASN1465 THR1466 ALA1467 THR1468 ILE1469 PRO1470 TYR1471 PHE1472 ASN1473 PHE1474 THR1475 VAL1476 PRO1477 THR1478 GLU1479 LEU1480 LYS1481 GLY1482 VAL1483 ASP1484 THR1485 LYS1486 ILE1487 LEU1488 ASP1489 PRO1490 ARG1491 ASN1492 THR1493 TYR1494 ALA1495 ASP1496 ALA1497 SER1498 GLU1499 TRP1500 GLU1501 VAL1502 LYS1503 ALA1504 LYS1505 ASP1506 LEU1507 ALA1508 GLU1509 ARG1510 PHE1511 GLN1512 LYS1513 ASN1514 PHE1515 LYS1516 LYS1517 PHE1518
Ligands
Unit 3 ATP541 OXD543 MG998 MN999
Unit 4 ATP1541 OXD1543 MG1998 MN1999
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany