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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF NAD KINASE FROM THERMOTOGA MARITIMA
Keywords DOMAIN 1: ALPHA/BETA DOMAIN2: BETA SANDWICH, STRUCTURAL GENO PSI, PROTEIN STRUCTURE INITIATIVE, BERKELEY STRUCTURAL GENO CENTER, BSGC, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1YT5     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   INORGANIC POLYPHOSPHATE/ATP-NAD KINASE  A 256 2044 0
2  Protein   INORGANIC POLYPHOSPHATE/ATP-NAD KINASE  B 256 2044 0
3  Protein   INORGANIC POLYPHOSPHATE/ATP-NAD KINASE  C 252 2015 0
4  Protein   INORGANIC POLYPHOSPHATE/ATP-NAD KINASE  D 256 2044 0
5  Ligand   INORGANIC POLYPHOSPHATE/ATP-NAD KINASE  A 6 0 30
6  Ligand   INORGANIC POLYPHOSPHATE/ATP-NAD KINASE  B 3 0 15
7  Ligand   INORGANIC POLYPHOSPHATE/ATP-NAD KINASE  C 2 0 10
8  Ligand   INORGANIC POLYPHOSPHATE/ATP-NAD KINASE  D 7 0 35
9 Water     120 0 120
total       1158 8147 210
Proteins
Unit 1 MET1 LYS2 ILE3 ALA4 ILE5 LEU6 TYR7 ARG8 GLU9 GLU10 ARG11 GLU12 LYS13 GLU14 GLY15 GLU16 PHE17 LEU18 LYS19 GLU20 LYS21 ILE22 SER23 LYS24 GLU25 HIS26 GLU27 VAL28 ILE29 GLU30 PHE31 GLY32 GLU33 ALA34 ASN35 ALA36 PRO37 GLY38 ARG39 VAL40 THR41 ALA42 ASP43 LEU44 ILE45 VAL46 VAL47 VAL48 GLY49 GLY50 ASP51 GLY52 THR53 VAL54 LEU55 LYS56 ALA57 ALA58 LYS59 LYS60 ALA61 ALA62 ASP63 GLY64 THR65 PRO66 MET67 VAL68 GLY69 PHE70 LYS71 ALA72 GLY73 ARG74 LEU75 GLY76 PHE77 LEU78 THR79 SER80 TYR81 THR82 LEU83 ASP84 GLU85 ILE86 ASP87 ARG88 PHE89 LEU90 GLU91 ASP92 LEU93 ARG94 ASN95 TRP96 ASN97 PHE98 ARG99 GLU100 GLU101 THR102 ARG103 TRP104 PHE105 ILE106 GLN107 ILE108 GLU109 SER110 GLU111 LEU112 GLY113 ASN114 HIS115 LEU116 ALA117 LEU118 ASN119 ASP120 VAL121 THR122 LEU123 GLU124 ARG125 ASP126 LEU127 SER128 GLY129 LYS130 MET131 VAL132 GLU133 ILE134 GLU135 VAL136 GLU137 VAL138 GLU139 HIS140 HIS141 SER142 SER143 MET144 TRP145 PHE146 PHE147 ALA148 ASP149 GLY150 VAL151 VAL152 ILE153 SER154 THR155 PRO156 THR157 GLY158 SER159 THR160 ALA161 TYR162 SER163 LEU164 SER165 ILE166 GLY167 GLY168 PRO169 ILE170 ILE171 PHE172 PRO173 GLU174 CYS175 GLU176 VAL177 LEU178 GLU179 ILE180 SER181 PRO182 ILE183 ALA184 PRO185 GLN186 PHE187 PHE188 LEU189 THR190 ARG191 SER192 VAL193 VAL194 ILE195 PRO196 SER197 ASN198 PHE199 LYS200 VAL201 VAL202 VAL203 GLU204 SER205 GLN206 ARG207 ASP208 ILE209 ASN210 MET211 LEU212 VAL213 ASP214 GLY215 VAL216 LEU217 THR218 GLY219 LYS220 THR221 LYS222 ARG223 ILE224 GLU225 VAL226 LYS227 LYS228 SER229 ARG230 ARG231 TYR232 VAL233 ARG234 ILE235 LEU236 ARG237 PRO238 PRO239 GLU240 TYR241 ASP242 TYR243 VAL244 THR245 VAL246 ILE247 ARG248 ASP249 LYS250 LEU251 GLY252 TYR253 GLY254 ARG255 ARG256
Unit 2 MET1 LYS2 ILE3 ALA4 ILE5 LEU6 TYR7 ARG8 GLU9 GLU10 ARG11 GLU12 LYS13 GLU14 GLY15 GLU16 PHE17 LEU18 LYS19 GLU20 LYS21 ILE22 SER23 LYS24 GLU25 HIS26 GLU27 VAL28 ILE29 GLU30 PHE31 GLY32 GLU33 ALA34 ASN35 ALA36 PRO37 GLY38 ARG39 VAL40 THR41 ALA42 ASP43 LEU44 ILE45 VAL46 VAL47 VAL48 GLY49 GLY50 ASP51 GLY52 THR53 VAL54 LEU55 LYS56 ALA57 ALA58 LYS59 LYS60 ALA61 ALA62 ASP63 GLY64 THR65 PRO66 MET67 VAL68 GLY69 PHE70 LYS71 ALA72 GLY73 ARG74 LEU75 GLY76 PHE77 LEU78 THR79 SER80 TYR81 THR82 LEU83 ASP84 GLU85 ILE86 ASP87 ARG88 PHE89 LEU90 GLU91 ASP92 LEU93 ARG94 ASN95 TRP96 ASN97 PHE98 ARG99 GLU100 GLU101 THR102 ARG103 TRP104 PHE105 ILE106 GLN107 ILE108 GLU109 SER110 GLU111 LEU112 GLY113 ASN114 HIS115 LEU116 ALA117 LEU118 ASN119 ASP120 VAL121 THR122 LEU123 GLU124 ARG125 ASP126 LEU127 SER128 GLY129 LYS130 MET131 VAL132 GLU133 ILE134 GLU135 VAL136 GLU137 VAL138 GLU139 HIS140 HIS141 SER142 SER143 MET144 TRP145 PHE146 PHE147 ALA148 ASP149 GLY150 VAL151 VAL152 ILE153 SER154 THR155 PRO156 THR157 GLY158 SER159 THR160 ALA161 TYR162 SER163 LEU164 SER165 ILE166 GLY167 GLY168 PRO169 ILE170 ILE171 PHE172 PRO173 GLU174 CYS175 GLU176 VAL177 LEU178 GLU179 ILE180 SER181 PRO182 ILE183 ALA184 PRO185 GLN186 PHE187 PHE188 LEU189 THR190 ARG191 SER192 VAL193 VAL194 ILE195 PRO196 SER197 ASN198 PHE199 LYS200 VAL201 VAL202 VAL203 GLU204 SER205 GLN206 ARG207 ASP208 ILE209 ASN210 MET211 LEU212 VAL213 ASP214 GLY215 VAL216 LEU217 THR218 GLY219 LYS220 THR221 LYS222 ARG223 ILE224 GLU225 VAL226 LYS227 LYS228 SER229 ARG230 ARG231 TYR232 VAL233 ARG234 ILE235 LEU236 ARG237 PRO238 PRO239 GLU240 TYR241 ASP242 TYR243 VAL244 THR245 VAL246 ILE247 ARG248 ASP249 LYS250 LEU251 GLY252 TYR253 GLY254 ARG255 ARG256
Unit 3 MET1 LYS2 ILE3 ALA4 ILE5 LEU6 TYR7 ARG8 GLU9 GLU10 ARG11 GLU12 LYS13 GLU14 GLY15 GLU16 PHE17 LEU18 LYS19 GLU20 LYS21 ILE22 SER23 LYS24 GLU25 HIS26 GLU27 VAL28 ILE29 GLU30 PHE31 GLY32 GLU33 ALA34 ASN35 ALA36 PRO37 GLY38 ARG39 VAL40 THR41 ALA42 ASP43 LEU44 ILE45 VAL46 VAL47 VAL48 GLY49 GLY50 ASP51 GLY52 THR53 VAL54 LEU55 LYS56 ALA57 ALA58 LYS59 LYS60 ALA61 ALA62 ASP63 GLY64 THR65 PRO66 MET67 VAL68 GLY69 PHE70 LEU75 GLY76 PHE77 LEU78 THR79 SER80 TYR81 THR82 LEU83 ASP84 GLU85 ILE86 ASP87 ARG88 PHE89 LEU90 GLU91 ASP92 LEU93 ARG94 ASN95 TRP96 ASN97 PHE98 ARG99 GLU100 GLU101 THR102 ARG103 TRP104 PHE105 ILE106 GLN107 ILE108 GLU109 SER110 GLU111 LEU112 GLY113 ASN114 HIS115 LEU116 ALA117 LEU118 ASN119 ASP120 VAL121 THR122 LEU123 GLU124 ARG125 ASP126 LEU127 SER128 GLY129 LYS130 MET131 VAL132 GLU133 ILE134 GLU135 VAL136 GLU137 VAL138 GLU139 HIS140 HIS141 SER142 SER143 MET144 TRP145 PHE146 PHE147 ALA148 ASP149 GLY150 VAL151 VAL152 ILE153 SER154 THR155 PRO156 THR157 GLY158 SER159 THR160 ALA161 TYR162 SER163 LEU164 SER165 ILE166 GLY167 GLY168 PRO169 ILE170 ILE171 PHE172 PRO173 GLU174 CYS175 GLU176 VAL177 LEU178 GLU179 ILE180 SER181 PRO182 ILE183 ALA184 PRO185 GLN186 PHE187 PHE188 LEU189 THR190 ARG191 SER192 VAL193 VAL194 ILE195 PRO196 SER197 ASN198 PHE199 LYS200 VAL201 VAL202 VAL203 GLU204 SER205 GLN206 ARG207 ASP208 ILE209 ASN210 MET211 LEU212 VAL213 ASP214 GLY215 VAL216 LEU217 THR218 GLY219 LYS220 THR221 LYS222 ARG223 ILE224 GLU225 VAL226 LYS227 LYS228 SER229 ARG230 ARG231 TYR232 VAL233 ARG234 ILE235 LEU236 ARG237 PRO238 PRO239 GLU240 TYR241 ASP242 TYR243 VAL244 THR245 VAL246 ILE247 ARG248 ASP249 LYS250 LEU251 GLY252 TYR253 GLY254 ARG255 ARG256
Unit 4 MET1 LYS2 ILE3 ALA4 ILE5 LEU6 TYR7 ARG8 GLU9 GLU10 ARG11 GLU12 LYS13 GLU14 GLY15 GLU16 PHE17 LEU18 LYS19 GLU20 LYS21 ILE22 SER23 LYS24 GLU25 HIS26 GLU27 VAL28 ILE29 GLU30 PHE31 GLY32 GLU33 ALA34 ASN35 ALA36 PRO37 GLY38 ARG39 VAL40 THR41 ALA42 ASP43 LEU44 ILE45 VAL46 VAL47 VAL48 GLY49 GLY50 ASP51 GLY52 THR53 VAL54 LEU55 LYS56 ALA57 ALA58 LYS59 LYS60 ALA61 ALA62 ASP63 GLY64 THR65 PRO66 MET67 VAL68 GLY69 PHE70 LYS71 ALA72 GLY73 ARG74 LEU75 GLY76 PHE77 LEU78 THR79 SER80 TYR81 THR82 LEU83 ASP84 GLU85 ILE86 ASP87 ARG88 PHE89 LEU90 GLU91 ASP92 LEU93 ARG94 ASN95 TRP96 ASN97 PHE98 ARG99 GLU100 GLU101 THR102 ARG103 TRP104 PHE105 ILE106 GLN107 ILE108 GLU109 SER110 GLU111 LEU112 GLY113 ASN114 HIS115 LEU116 ALA117 LEU118 ASN119 ASP120 VAL121 THR122 LEU123 GLU124 ARG125 ASP126 LEU127 SER128 GLY129 LYS130 MET131 VAL132 GLU133 ILE134 GLU135 VAL136 GLU137 VAL138 GLU139 HIS140 HIS141 SER142 SER143 MET144 TRP145 PHE146 PHE147 ALA148 ASP149 GLY150 VAL151 VAL152 ILE153 SER154 THR155 PRO156 THR157 GLY158 SER159 THR160 ALA161 TYR162 SER163 LEU164 SER165 ILE166 GLY167 GLY168 PRO169 ILE170 ILE171 PHE172 PRO173 GLU174 CYS175 GLU176 VAL177 LEU178 GLU179 ILE180 SER181 PRO182 ILE183 ALA184 PRO185 GLN186 PHE187 PHE188 LEU189 THR190 ARG191 SER192 VAL193 VAL194 ILE195 PRO196 SER197 ASN198 PHE199 LYS200 VAL201 VAL202 VAL203 GLU204 SER205 GLN206 ARG207 ASP208 ILE209 ASN210 MET211 LEU212 VAL213 ASP214 GLY215 VAL216 LEU217 THR218 GLY219 LYS220 THR221 LYS222 ARG223 ILE224 GLU225 VAL226 LYS227 LYS228 SER229 ARG230 ARG231 TYR232 VAL233 ARG234 ILE235 LEU236 ARG237 PRO238 PRO239 GLU240 TYR241 ASP242 TYR243 VAL244 THR245 VAL246 ILE247 ARG248 ASP249 LYS250 LEU251 GLY252 TYR253 GLY254 ARG255 ARG256
Ligands
Unit 5 SO4301 SO4304 SO4309 SO4313 SO4316 SO4317
Unit 6 SO4302 SO4310 SO4318
Unit 7 SO4305 SO4307
Unit 8 SO4303 SO4306 SO4308 SO4311 SO4312 SO4314 SO4315
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany