1YT3 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF ESCHERICHIA COLI RNASE D, AN EXORIBONUCLEASE INVOLVED IN STRUCTURED RNA PROCESSING
• Keywords: RNASE; EXORIBONUCLEASE; RIBONUCLEASE; EXONUCLEASE; NUCLEASE; HYDROLASE; TRNA PROCESSING, HYDROLASE,TRANSLATION
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1YT3	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	RIBONUCLEASE D	A	375	3007	0
2	Ligand	RIBONUCLEASE D	A	12	0	40
3	Water			492	0	492
total				879	3007	532

Proteins

Unit 1

MET 1 ASN 2 TYR 3 GLN 4 MET 5 ILE 6 THR 7 THR 8 ASP 9 ASP 10 ALA 11 LEU 12 ALA 13 SER 14 LEU 15 CYS 16 GLU 17 ALA 18 VAL 19 ARG 20 ALA 21 PHE 22 PRO 23 ALA 24 ILE 25 ALA 26 LEU 27 ASP 28 THR 29 GLU 30 PHE 31 VAL 32 ARG 33 THR 34 ARG 35 THR 36 TYR 37 TYR 38 PRO 39 GLN 40 LEU 41 GLY 42 LEU 43 ILE 44 GLN 45 LEU 46 PHE 47 ASP 48 GLY 49 GLU 50 HIS 51 LEU 52 ALA 53 LEU 54 ILE 55 ASP 56 PRO 57 LEU 58 GLY 59 ILE 60 THR 61 ASP 62 TRP 63 SER 64 PRO 65 LEU 66 LYS 67 ALA 68 ILE 69 LEU 70 ARG 71 ASP 72 PRO 73 SER 74 ILE 75 THR 76 LYS 77 PHE 78 LEU 79 HIS 80 ALA 81 GLY 82 SER 83 GLU 84 ASP 85 LEU 86 GLU 87 VAL 88 PHE 89 LEU 90 ASN 91 VAL 92 PHE 93 GLY 94 GLU 95 LEU 96 PRO 97 GLN 98 PRO 99 LEU 100 ILE 101 ASP 102 THR 103 GLN 104 ILE 105 LEU 106 ALA 107 ALA 108 PHE 109 CYS 110 GLY 111 ARG 112 PRO 113 MET 114 SER 115 TRP 116 GLY 117 PHE 118 ALA 119 SER 120 MET 121 VAL 122 GLU 123 GLU 124 TYR 125 SER 126 GLY 127 VAL 128 THR 129 LEU 130 ASP 131 LYS 132 SER 133 GLU 134 SER 135 ARG 136 THR 137 ASP 138 TRP 139 LEU 140 ALA 141 ARG 142 PRO 143 LEU 144 THR 145 GLU 146 ARG 147 GLN 148 CYS 149 GLU 150 TYR 151 ALA 152 ALA 153 ALA 154 ASP 155 VAL 156 TRP 157 TYR 158 LEU 159 LEU 160 PRO 161 ILE 162 THR 163 ALA 164 LYS 165 LEU 166 MET 167 VAL 168 GLU 169 THR 170 GLU 171 ALA 172 SER 173 GLY 174 TRP 175 LEU 176 PRO 177 ALA 178 ALA 179 LEU 180 ASP 181 GLU 182 CYS 183 ARG 184 LEU 185 MET 186 GLN 187 MET 188 ARG 189 ARG 190 GLN 191 GLU 192 VAL 193 VAL 194 ALA 195 PRO 196 GLU 197 ASP 198 ALA 199 TRP 200 ARG 201 ASP 202 ILE 203 THR 204 ASN 205 ALA 206 TRP 207 GLN 208 LEU 209 ARG 210 THR 211 ARG 212 GLN 213 LEU 214 ALA 215 CYS 216 LEU 217 GLN 218 LEU 219 LEU 220 ALA 221 ASP 222 TRP 223 ARG 224 LEU 225 ARG 226 LYS 227 ALA 228 ARG 229 GLU 230 ARG 231 ASP 232 LEU 233 ALA 234 VAL 235 ASN 236 PHE 237 VAL 238 VAL 239 ARG 240 GLU 241 GLU 242 HIS 243 LEU 244 TRP 245 SER 246 VAL 247 ALA 248 ARG 249 TYR 250 MET 251 PRO 252 GLY 253 SER 254 LEU 255 GLY 256 GLU 257 LEU 258 ASP 259 SER 260 LEU 261 GLY 262 LEU 263 SER 264 GLY 265 SER 266 GLU 267 ILE 268 ARG 269 PHE 270 HIS 271 GLY 272 LYS 273 THR 274 LEU 275 LEU 276 ALA 277 LEU 278 VAL 279 GLU 280 LYS 281 ALA 282 GLN 283 THR 284 LEU 285 PRO 286 GLU 287 ASP 288 ALA 289 LEU 290 PRO 291 GLN 292 PRO 293 MET 294 LEU 295 ASN 296 LEU 297 MET 298 ASP 299 MET 300 PRO 301 GLY 302 TYR 303 ARG 304 LYS 305 ALA 306 PHE 307 LYS 308 ALA 309 ILE 310 LYS 311 SER 312 LEU 313 ILE 314 THR 315 ASP 316 VAL 317 SER 318 GLU 319 THR 320 HIS 321 LYS 322 ILE 323 SER 324 ALA 325 GLU 326 LEU 327 LEU 328 ALA 329 SER 330 ARG 331 ARG 332 GLN 333 ILE 334 ASN 335 GLN 336 LEU 337 LEU 338 ASN 339 TRP 340 HIS 341 TRP 342 LYS 343 LEU 344 LYS 345 PRO 346 GLN 347 ASN 348 ASN 349 LEU 350 PRO 351 GLU 352 LEU 353 ILE 354 SER 355 GLY 356 TRP 357 ARG 358 GLY 359 GLU 360 LEU 361 MET 362 ALA 363 GLU 364 ALA 365 LEU 366 HIS 367 ASN 368 LEU 369 LEU 370 GLN 371 GLU 372 TYR 373 PRO 374 GLN 375

Ligands

Unit 2

SO4 601 SO4 602 SO4 603 SO4 604 SO4 605 SO4 606 SO4 607 ZN 1001 ZN 1002 ZN 1003 ZN 1004 ZN 1005