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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF A NOVEL PHOTORECEPTOR: THE BLUF DOMAIN OF APPA RHODOBACTER SPHAEROIDES
Keywords FERREDOXIN-LIKE FOLD, FLAVIN BINDING, PHOTORECEPTOR, TRANSCR
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1YRX     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HYPOTHETICAL PROTEIN RSPH03001874  A 118 918 0
2  Protein   HYPOTHETICAL PROTEIN RSPH03001874  B 116 909 0
3  Protein   HYPOTHETICAL PROTEIN RSPH03001874  C 115 869 0
4  Ligand   HYPOTHETICAL PROTEIN RSPH03001874  A 4 0 68
5  Ligand   HYPOTHETICAL PROTEIN RSPH03001874  B 1 0 31
6  Ligand   HYPOTHETICAL PROTEIN RSPH03001874  C 4 0 70
7 Water     97 0 97
total       455 2696 266

Proteins
Unit 1 ALA13 GLY14 HIS15 MET16 VAL17 SER18 CYS19 CYS20 TYR21 ARG22 SER23 LEU24 ALA25 ALA26 PRO27 ASP28 LEU29 THR30 LEU31 ARG32 ASP33 LEU34 LEU35 ASP36 ILE37 VAL38 GLU39 THR40 SER41 GLN42 ALA43 HIS44 ASN45 ALA46 ARG47 ALA48 GLN49 LEU50 THR51 GLY52 ALA53 LEU54 PHE55 TYR56 SER57 GLN58 GLY59 VAL60 PHE61 PHE62 GLN63 TRP64 LEU65 GLU66 GLY67 ARG68 PRO69 ALA70 ALA71 VAL72 ALA73 GLU74 VAL75 MET76 THR77 HIS78 ILE79 GLN80 ARG81 ASP82 ARG83 ARG84 HIS85 SER86 ASN87 VAL88 GLU89 ILE90 LEU91 ALA92 GLU93 GLU94 PRO95 ILE96 ALA97 LYS98 ARG99 ARG100 PHE101 ALA102 GLY103 TRP104 HIS105 MET106 GLN107 LEU108 SER109 CYS110 SER111 GLU112 ALA113 ASP114 MET115 ARG116 SER117 LEU118 GLY119 LEU120 ALA121 GLU122 SER123 ARG124 GLN125 ILE126 VAL127 THR128 VAL129 GLY130
Unit 2 GLY14 HIS15 MET16 VAL17 SER18 CYS19 CYS20 TYR21 ARG22 SER23 LEU24 ALA25 ALA26 PRO27 ASP28 LEU29 THR30 LEU31 ARG32 ASP33 LEU34 LEU35 ASP36 ILE37 VAL38 GLU39 THR40 SER41 GLN42 ALA43 HIS44 ASN45 ALA46 ARG47 ALA48 GLN49 LEU50 THR51 GLY52 ALA53 LEU54 PHE55 TYR56 SER57 GLN58 GLY59 VAL60 PHE61 PHE62 GLN63 TRP64 LEU65 GLU66 GLY67 ARG68 PRO69 ALA70 ALA71 VAL72 ALA73 GLU74 VAL75 MET76 THR77 HIS78 ILE79 GLN80 ARG81 ASP82 ARG83 ARG84 HIS85 SER86 ASN87 VAL88 GLU89 ILE90 LEU91 ALA92 GLU93 GLU94 PRO95 ILE96 ALA97 LYS98 ARG99 ARG100 PHE101 ALA102 GLY103 TRP104 HIS105 MET106 GLN107 LEU108 SER109 CYS110 SER111 GLU112 ALA113 ASP114 MET115 ARG116 SER117 LEU118 GLY119 LEU120 ALA121 GLU122 SER123 ARG124 GLN125 ILE126 VAL127 THR128 VAL129
Unit 3 HIS15 MET16 VAL17 SER18 CYS19 CYS20 TYR21 ARG22 SER23 LEU24 ALA25 ALA26 PRO27 ASP28 LEU29 THR30 LEU31 ARG32 ASP33 LEU34 LEU35 ASP36 ILE37 VAL38 GLU39 THR40 SER41 GLN42 ALA43 HIS44 ASN45 ALA46 ARG47 ALA48 GLN49 LEU50 THR51 GLY52 ALA53 LEU54 PHE55 TYR56 SER57 GLN58 GLY59 VAL60 PHE61 PHE62 GLN63 TRP64 LEU65 GLU66 GLY67 ARG68 PRO69 ALA70 ALA71 VAL72 ALA73 GLU74 VAL75 MET76 THR77 HIS78 ILE79 GLN80 ARG81 ASP82 ARG83 ARG84 HIS85 SER86 ASN87 VAL88 GLU89 ILE90 LEU91 ALA92 GLU93 GLU94 PRO95 ILE96 ALA97 LYS98 ARG99 ARG100 PHE101 ALA102 GLY103 TRP104 HIS105 MET106 GLN107 LEU108 SER109 CYS110 SER111 GLU112 ALA113 ASP114 MET115 ARG116 SER117 LEU118 GLY119 LEU120 ALA121 GLU122 SER123 ARG124 GLN125 ILE126 VAL127 THR128 VAL129

Ligands
Unit 4 FMN201 D9G302 D9G303 D9G306
Unit 5 FMN202
Unit 6 FMN203 D9G301 D9G304 D9G305

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany